Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
1BFN
DownloadVisualize
BU of 1bfn by Molmil
BETA-AMYLASE/BETA-CYCLODEXTRIN COMPLEX
Descriptor: BETA-AMYLASE, Cycloheptakis-(1-4)-(alpha-D-glucopyranose), SULFATE ION
Authors:Adachi, M, Mikami, B, Katsube, T, Utsumi, S.
Deposit date:1998-05-22
Release date:1998-10-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Crystal structure of recombinant soybean beta-amylase complexed with beta-cyclodextrin.
J.Biol.Chem., 273, 1998
1OD5
DownloadVisualize
BU of 1od5 by Molmil
Crystal structure of glycinin A3B4 subunit homohexamer
Descriptor: CARBONATE ION, GLYCININ, MAGNESIUM ION
Authors:Adachi, M, Kanamori, J, Masuda, T, Yagasaki, K, Kitamura, K, Mikami, B, Utsumi, S.
Deposit date:2003-02-13
Release date:2003-06-02
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of Soybean 11S Globulin: Glycinin A3B4 Homohexamer
Proc.Natl.Acad.Sci.USA, 100, 2003
2ZYE
DownloadVisualize
BU of 2zye by Molmil
Structure of HIV-1 Protease in Complex with Potent Inhibitor KNI-272 Determined by Neutron Crystallography
Descriptor: (4R)-N-tert-butyl-3-[(2S,3S)-2-hydroxy-3-({N-[(isoquinolin-5-yloxy)acetyl]-S-methyl-L-cysteinyl}amino)-4-phenylbutanoyl]-1,3-thiazolidine-4-carboxamide, protease
Authors:Adachi, M, Ohhara, T, Tamada, T, Okazaki, N, Kuroki, R.
Deposit date:2009-01-20
Release date:2009-03-24
Last modified:2021-11-10
Method:NEUTRON DIFFRACTION (1.9 Å)
Cite:Structure of HIV-1 protease in complex with potent inhibitor KNI-272 determined by high-resolution X-ray and neutron crystallography.
Proc.Natl.Acad.Sci.USA, 2009
1FXZ
DownloadVisualize
BU of 1fxz by Molmil
CRYSTAL STRUCTURE OF SOYBEAN PROGLYCININ A1AB1B HOMOTRIMER
Descriptor: GLYCININ G1
Authors:Adachi, M, Takenaka, Y, Gidamis, A.B, Mikami, B, Utsumi, S.
Deposit date:2000-09-28
Release date:2001-10-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of soybean proglycinin A1aB1b homotrimer.
J.Mol.Biol., 305, 2001
3FX5
DownloadVisualize
BU of 3fx5 by Molmil
Structure of HIV-1 Protease in Complex with Potent Inhibitor KNI-272 Determined by High Resolution X-ray Crystallography
Descriptor: (4R)-N-tert-butyl-3-[(2S,3S)-2-hydroxy-3-({N-[(isoquinolin-5-yloxy)acetyl]-S-methyl-L-cysteinyl}amino)-4-phenylbutanoyl]-1,3-thiazolidine-4-carboxamide, GLYCEROL, protease
Authors:Adachi, M, Ohhara, T, Tamada, T, Okazaki, N, Kuroki, R.
Deposit date:2009-01-20
Release date:2009-03-24
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (0.93 Å)
Cite:Structure of HIV-1 protease in complex with potent inhibitor KNI-272 determined by high-resolution X-ray and neutron crystallography.
Proc.Natl.Acad.Sci.USA, 2009
6A28
DownloadVisualize
BU of 6a28 by Molmil
Crystal structure of PprA W183R mutant form 2
Descriptor: DNA repair protein PprA, SULFATE ION
Authors:Adachi, M, Shibazaki, C, Shimizu, R, Arai, S, Satoh, K, Narumi, I, Kuroki, R.
Deposit date:2018-06-09
Release date:2018-12-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.193 Å)
Cite:Extended structure of pleiotropic DNA repair-promoting protein PprA from Deinococcus radiodurans.
FASEB J., 33, 2019
6A27
DownloadVisualize
BU of 6a27 by Molmil
Crystal structure of PprA W183R mutant form 1
Descriptor: DNA repair protein PprA, GLYCEROL, SULFATE ION
Authors:Adachi, M, Shibazaki, C, Shimizu, R, Arai, S, Satoh, K, Narumi, I, Kuroki, R.
Deposit date:2018-06-09
Release date:2018-12-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.353 Å)
Cite:Extended structure of pleiotropic DNA repair-promoting protein PprA from Deinococcus radiodurans.
FASEB J., 33, 2019
6A29
DownloadVisualize
BU of 6a29 by Molmil
Crystal structure of PprA A139R mutant
Descriptor: DNA repair protein PprA
Authors:Adachi, M, Shibazaki, C, Shimizu, R, Arai, S, Satoh, K, Narumi, I, Kuroki, R.
Deposit date:2018-06-09
Release date:2018-12-26
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.399 Å)
Cite:Extended structure of pleiotropic DNA repair-promoting protein PprA from Deinococcus radiodurans.
FASEB J., 33, 2019
5ZL6
DownloadVisualize
BU of 5zl6 by Molmil
Histidine Racemase from Leuconostoc mesenteroides subsp. sake NBRC 102480
Descriptor: Histidine racemase, PYRIDOXAL-5'-PHOSPHATE
Authors:Adachi, M, Shimizu, R, Oikawa, T.
Deposit date:2018-03-27
Release date:2018-11-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The first identification and characterization of a histidine-specific amino acid racemase, histidine racemase from a lactic acid bacterium, Leuconostoc mesenteroides subsp. sake NBRC 102480.
Amino Acids, 51, 2019
8GOS
DownloadVisualize
BU of 8gos by Molmil
Crystal structure of fluorescent protein RasM
Descriptor: RasM
Authors:Adachi, M, Kagotani, Y, Shimizu, R.
Deposit date:2022-08-25
Release date:2023-09-27
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.01 Å)
Cite:Beat-frequency-resolved two-dimensional electronic spectroscopy: disentangling vibrational coherences in artificial fluorescent proteins with sub-10-fs visible laser pulses.
Opt Express, 31, 2023
6IQH
DownloadVisualize
BU of 6iqh by Molmil
X-ray crystal structure of covalent-bonded complex of Fc and peptide
Descriptor: 17-mer peptide (GPDCAYHKGELVWCTFH), 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Immunoglobulin gamma-1 heavy chain
Authors:Adachi, M, Ito, Y.
Deposit date:2018-11-08
Release date:2019-02-13
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.999 Å)
Cite:Site-Specific Chemical Conjugation of Antibodies by Using Affinity Peptide for the Development of Therapeutic Antibody Format.
Bioconjug. Chem., 30, 2019
6IQG
DownloadVisualize
BU of 6iqg by Molmil
X-ray crystal structure of Fc and peptide complex
Descriptor: 18-mer peptide G(HCS)DCAYHRGELVWCT(HCS)H(NH2), 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ...
Authors:Adachi, M, Ito, Y.
Deposit date:2018-11-08
Release date:2019-02-13
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.998 Å)
Cite:Site-Specific Chemical Conjugation of Antibodies by Using Affinity Peptide for the Development of Therapeutic Antibody Format.
Bioconjug. Chem., 30, 2019
6IXD
DownloadVisualize
BU of 6ixd by Molmil
X-ray crystal structure of bPI-11 hiv-1 protease complex
Descriptor: (4R)-3-[(2S,3S)-3-[2-[4-[5-[(3aS,4S,6aR)-2-oxidanylidene-1,3,3a,4,6,6a-hexahydrothieno[3,4-d]imidazol-4-yl]pentanoylamino]-2,6-dimethyl-phenoxy]ethanoylamino]-2-oxidanyl-4-phenyl-butanoyl]-5,5-dimethyl-N-[(1S,2R)-2-oxidanyl-2,3-dihydro-1H-inden-1-yl]-1,3-thiazolidine-4-carboxamide, CHLORIDE ION, GLYCEROL, ...
Authors:Adachi, M, Hidaka, K.
Deposit date:2018-12-10
Release date:2019-05-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1 Å)
Cite:Acquired Removability of Aspartic Protease Inhibitors by Direct Biotinylation.
Bioconjug.Chem., 30, 2019
5YOJ
DownloadVisualize
BU of 5yoj by Molmil
Structure of A17 HIV-1 Protease in Complex with Inhibitor KNI-1657
Descriptor: (4R)-N-[(2,6-dimethylphenyl)methyl]-3-[(2S,3S)-3-[[(2S)-2-[(7-methoxy-1-benzofuran-2-yl)carbonylamino]-2-[(3R)-oxolan-3 -yl]ethanoyl]amino]-2-oxidanyl-4-phenyl-butanoyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxamide, A17 HIV-1 protease, GLYCEROL
Authors:Adachi, M, Hidaka, K, Kuroki, R, Kiso, Y.
Deposit date:2017-10-29
Release date:2018-07-11
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Identification of Highly Potent Human Immunodeficiency Virus Type-1 Protease Inhibitors against Lopinavir and Darunavir Resistant Viruses from Allophenylnorstatine-Based Peptidomimetics with P2 Tetrahydrofuranylglycine.
J. Med. Chem., 61, 2018
5YOK
DownloadVisualize
BU of 5yok by Molmil
Structure of HIV-1 Protease in Complex with Inhibitor KNI-1657
Descriptor: (4R)-N-[(2,6-dimethylphenyl)methyl]-3-[(2S,3S)-3-[[(2S)-2-[(7-methoxy-1-benzofuran-2-yl)carbonylamino]-2-[(3R)-oxolan-3 -yl]ethanoyl]amino]-2-oxidanyl-4-phenyl-butanoyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxamide, GLYCEROL, HIV-1 PROTEASE
Authors:Adachi, M, Hidaka, K, Kuroki, R, Kiso, Y.
Deposit date:2017-10-29
Release date:2018-07-18
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (0.85 Å)
Cite:Identification of Highly Potent Human Immunodeficiency Virus Type-1 Protease Inhibitors against Lopinavir and Darunavir Resistant Viruses from Allophenylnorstatine-Based Peptidomimetics with P2 Tetrahydrofuranylglycine.
J. Med. Chem., 61, 2018
6L27
DownloadVisualize
BU of 6l27 by Molmil
X-ray crystal structure of the mutant green fluorescent protein
Descriptor: Green fluorescent protein
Authors:Adachi, M, Shimizu, R, Shibazaki, C, Kagotani, Y, Ostermann, A, Schrader, T.E.
Deposit date:2019-10-02
Release date:2020-04-01
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (0.77 Å)
Cite:Direct Observation of the Protonation States in the Mutant Green Fluorescent Protein.
J Phys Chem Lett, 11, 2020
6L26
DownloadVisualize
BU of 6l26 by Molmil
Neutron crystal structure of the mutant green fluorescent protein (EGFP)
Descriptor: Green fluorescent protein, trideuteriooxidanium
Authors:Adachi, M, Shimizu, R, Shibazaki, C, Kagotani, Y, Ostermann, A, Schrader, T.E.
Deposit date:2019-10-02
Release date:2020-04-08
Last modified:2023-11-22
Method:NEUTRON DIFFRACTION (1.444 Å)
Cite:Direct Observation of the Protonation States in the Mutant Green Fluorescent Protein.
J Phys Chem Lett, 11, 2020
1UD1
DownloadVisualize
BU of 1ud1 by Molmil
Crystal structure of proglycinin mutant C88S
Descriptor: Glycinin G1
Authors:Utsumi, S, Adachi, M.
Deposit date:2003-04-24
Release date:2004-02-03
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal Structures and Structural Stabilities of the Disulfide Bond-Deficient Soybean Proglycinin Mutants C12G and C88S.
J.Agric.Food Chem., 51, 2003
3A2O
DownloadVisualize
BU of 3a2o by Molmil
Crystal Structure of HIV-1 Protease Complexed with KNI-1689
Descriptor: (4R)-3-[(2S,3S)-3-{[(4-amino-2,6-dimethylphenoxy)acetyl]amino}-2-hydroxy-4-phenylbutanoyl]-5,5-dimethyl-N-(2-methylprop -2-en-1-yl)-1,3-thiazolidine-4-carboxamide, GLYCEROL, PROTEASE
Authors:Adachi, M, Tamada, T, Hidaka, K, Kimura, T, Kiso, Y, Kuroki, R.
Deposit date:2009-05-26
Release date:2010-03-02
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (0.88 Å)
Cite:Small-sized human immunodeficiency virus type-1 protease inhibitors containing allophenylnorstatine to explore the S2' pocket.
J.Med.Chem., 52, 2009
5XQN
DownloadVisualize
BU of 5xqn by Molmil
Crystal structure of Notched-fin eelpout type III antifreeze protein (NFE6, AFP), C2221 form.
Descriptor: Ice-structuring protein, SULFATE ION
Authors:Adachi, M, Kondo, H, Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.19 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XQR
DownloadVisualize
BU of 5xqr by Molmil
Crystal structure of Notched-fin eelpout type III antifreeze protein A20V mutant (NFE6, AFP), C2221 form
Descriptor: ACETATE ION, Ice-structuring protein
Authors:Adachi, M, Shimizu, R, Shibazaki, C, Kondo, H, Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XQP
DownloadVisualize
BU of 5xqp by Molmil
Crystal structure of Notched-fin eelpout type III antifreeze protein (NFE6, AFP), P212121 form
Descriptor: Ice-structuring protein, SULFATE ION
Authors:Adachi, M, Shimizu, R, Shibazaki, C, Kondo, H, Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XQU
DownloadVisualize
BU of 5xqu by Molmil
Crystal structure of Notched-fin eelpout type III antifreeze protein A20I mutant (NFE6, AFP), P212121 form
Descriptor: Ice-structuring protein
Authors:Adachi, M, Shimizu, R, Shibazaki, C, Kondo, H, Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XQV
DownloadVisualize
BU of 5xqv by Molmil
Crystal structure of Notched-fin eelpout type III antifreeze protein A20L mutant (NFE6, AFP), P21 form
Descriptor: Ice-structuring protein
Authors:Adachi, M, Shimizu, R, Shibazaki, C, Kondo, H, Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (0.97 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XR0
DownloadVisualize
BU of 5xr0 by Molmil
Crystal structure of Notched-fin eelpout type III antifreeze protein A20T mutant (NFE6, AFP), P21 form
Descriptor: Ice-structuring protein
Authors:Adachi, M, Shimizu, R, Shibazaki, C, Kondo, H, Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (0.98 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018

 

1234>

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon