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2ZYE
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STRUCTURE OF HIV-1 PROTEASE IN COMPLEX WITH POTENT INHIBITOR KNI-272 DETERMINED BY NEUTRON CRYSTALLOGRAPHY
Descriptor:protease, (4R)-N-tert-butyl-3-[(2S,3S)-2-hydroxy-3-({N-[(isoquinolin-5-yloxy)acetyl]-S-methyl-L-cysteinyl}amino)-4-phenylbutanoyl]-1,3-thiazolidine-4-carboxamide
Authors:Adachi, M., Ohhara, T., Tamada, T., Okazaki, N., Kuroki, R.
Deposit date:2009-01-20
Release date:2009-03-24
Last modified:2018-06-20
Method:NEUTRON DIFFRACTION (1.9 Å)
Cite:Structure of HIV-1 protease in complex with potent inhibitor KNI-272 determined by high-resolution X-ray and neutron crystallography.
Proc.Natl.Acad.Sci.USA, 2009
3FX5
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STRUCTURE OF HIV-1 PROTEASE IN COMPLEX WITH POTENT INHIBITOR KNI-272 DETERMINED BY HIGH RESOLUTION X-RAY CRYSTALLOGRAPHY
Descriptor:protease, GLYCEROL, (4R)-N-tert-butyl-3-[(2S,3S)-2-hydroxy-3-({N-[(isoquinolin-5-yloxy)acetyl]-S-methyl-L-cysteinyl}amino)-4-phenylbutanoyl]-1,3-thiazolidine-4-carboxamide
Authors:Adachi, M., Ohhara, T., Tamada, T., Okazaki, N., Kuroki, R.
Deposit date:2009-01-20
Release date:2009-03-24
Last modified:2012-12-12
Method:X-RAY DIFFRACTION (0.93 Å)
Cite:Structure of HIV-1 protease in complex with potent inhibitor KNI-272 determined by high-resolution X-ray and neutron crystallography.
Proc.Natl.Acad.Sci.USA, 2009
1BFN
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BETA-AMYLASE/BETA-CYCLODEXTRIN COMPLEX
Descriptor:BETA-AMYLASE, ALPHA-D-GLUCOSE, SULFATE ION
Authors:Adachi, M., Mikami, B., Katsube, T., Utsumi, S.
Deposit date:1998-05-22
Release date:1998-10-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Crystal structure of recombinant soybean beta-amylase complexed with beta-cyclodextrin.
J.Biol.Chem., 273, 1998
1FXZ
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CRYSTAL STRUCTURE OF SOYBEAN PROGLYCININ A1AB1B HOMOTRIMER
Descriptor:GLYCININ G1
Authors:Adachi, M., Takenaka, Y., Gidamis, A.B., Mikami, B., Utsumi, S.
Deposit date:2000-09-28
Release date:2001-10-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of soybean proglycinin A1aB1b homotrimer.
J.Mol.Biol., 305, 2001
1OD5
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CRYSTAL STRUCTURE OF GLYCININ A3B4 SUBUNIT HOMOHEXAMER
Descriptor:GLYCININ, CARBONATE ION, MAGNESIUM ION
Authors:Adachi, M., Kanamori, J., Masuda, T., Yagasaki, K., Kitamura, K., Mikami, B., Utsumi, S.
Deposit date:2003-02-13
Release date:2003-06-02
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of Soybean 11S Globulin: Glycinin A3B4 Homohexamer
Proc.Natl.Acad.Sci.USA, 100, 2003
5ZL6
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HISTIDINE RACEMASE FROM LEUCONOSTOC MESENTEROIDES SUBSP. SAKE NBRC 102480
Descriptor:Histidine racemase, PYRIDOXAL-5'-PHOSPHATE
Authors:Adachi, M., Shimizu, R., Oikawa, T.
Deposit date:2018-03-27
Release date:2018-11-28
Last modified:2019-03-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The first identification and characterization of a histidine-specific amino acid racemase, histidine racemase from a lactic acid bacterium, Leuconostoc mesenteroides subsp. sake NBRC 102480.
Amino Acids, 51, 2019
6A27
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CRYSTAL STRUCTURE OF PPRA W183R MUTANT FORM 1
Descriptor:DNA repair protein PprA, SULFATE ION, GLYCEROL
Authors:Adachi, M., Shibazaki, C., Shimizu, R., Arai, S., Satoh, K., Narumi, I., Kuroki, R.
Deposit date:2018-06-09
Release date:2018-12-26
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (1.353 Å)
Cite:Extended structure of pleiotropic DNA repair-promoting protein PprA from Deinococcus radiodurans.
FASEB J., 33, 2019
6A28
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CRYSTAL STRUCTURE OF PPRA W183R MUTANT FORM 2
Descriptor:DNA repair protein PprA, SULFATE ION
Authors:Adachi, M., Shibazaki, C., Shimizu, R., Arai, S., Satoh, K., Narumi, I., Kuroki, R.
Deposit date:2018-06-09
Release date:2018-12-26
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (2.193 Å)
Cite:Extended structure of pleiotropic DNA repair-promoting protein PprA from Deinococcus radiodurans.
FASEB J., 33, 2019
6A29
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CRYSTAL STRUCTURE OF PPRA A139R MUTANT
Descriptor:DNA repair protein PprA
Authors:Adachi, M., Shibazaki, C., Shimizu, R., Arai, S., Satoh, K., Narumi, I., Kuroki, R.
Deposit date:2018-06-09
Release date:2018-12-26
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (2.399 Å)
Cite:Extended structure of pleiotropic DNA repair-promoting protein PprA from Deinococcus radiodurans.
FASEB J., 33, 2019
5YOJ
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STRUCTURE OF A17 HIV-1 PROTEASE IN COMPLEX WITH INHIBITOR KNI-1657
Descriptor:A17 HIV-1 protease, (4R)-N-[(2,6-dimethylphenyl)methyl]-3-[(2S,3S)-3-[[(2S)-2-[(7-methoxy-1-benzofuran-2-yl)carbonylamino]-2-[(3R)-oxolan-3-yl]ethanoyl]amino]-2-oxidanyl-4-phenyl-butanoyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxamide, GLYCEROL
Authors:Adachi, M., Hidaka, K., Kuroki, R., Kiso, Y.
Deposit date:2017-10-29
Release date:2018-07-11
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Identification of Highly Potent Human Immunodeficiency Virus Type-1 Protease Inhibitors against Lopinavir and Darunavir Resistant Viruses from Allophenylnorstatine-Based Peptidomimetics with P2 Tetrahydrofuranylglycine.
J. Med. Chem., 61, 2018
5YOK
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STRUCTURE OF HIV-1 PROTEASE IN COMPLEX WITH INHIBITOR KNI-1657
Descriptor:HIV-1 PROTEASE, (4R)-N-[(2,6-dimethylphenyl)methyl]-3-[(2S,3S)-3-[[(2S)-2-[(7-methoxy-1-benzofuran-2-yl)carbonylamino]-2-[(3R)-oxolan-3-yl]ethanoyl]amino]-2-oxidanyl-4-phenyl-butanoyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxamide, GLYCEROL
Authors:Adachi, M., Hidaka, K., Kuroki, R., Kiso, Y.
Deposit date:2017-10-29
Release date:2018-07-18
Method:X-RAY DIFFRACTION (0.85 Å)
Cite:Identification of Highly Potent Human Immunodeficiency Virus Type-1 Protease Inhibitors against Lopinavir and Darunavir Resistant Viruses from Allophenylnorstatine-Based Peptidomimetics with P2 Tetrahydrofuranylglycine.
J. Med. Chem., 61, 2018
1UCX
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CRYSTAL STRUCTURE OF PROGLYCININ C12G MUTANT
Descriptor:Glycinin G1
Authors:Utsumi, S., Adachi, M.
Deposit date:2003-04-24
Release date:2004-02-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal Structures and Structural Stabilities of the Disulfide Bond-Deficient Soybean Proglycinin Mutants C12G and C88S.
J.Agric.Food Chem., 51, 2003
1UD1
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CRYSTAL STRUCTURE OF PROGLYCININ MUTANT C88S
Descriptor:Glycinin G1
Authors:Utsumi, S., Adachi, M.
Deposit date:2003-04-24
Release date:2004-02-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal Structures and Structural Stabilities of the Disulfide Bond-Deficient Soybean Proglycinin Mutants C12G and C88S.
J.Agric.Food Chem., 51, 2003
3A2O
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CRYSTAL STRUCTURE OF HIV-1 PROTEASE COMPLEXED WITH KNI-1689
Descriptor:PROTEASE, GLYCEROL, (4R)-3-[(2S,3S)-3-{[(4-amino-2,6-dimethylphenoxy)acetyl]amino}-2-hydroxy-4-phenylbutanoyl]-5,5-dimethyl-N-(2-methylprop-2-en-1-yl)-1,3-thiazolidine-4-carboxamide
Authors:Adachi, M., Tamada, T., Hidaka, K., Kimura, T., Kiso, Y., Kuroki, R.
Deposit date:2009-05-26
Release date:2010-03-02
Last modified:2012-12-12
Method:X-RAY DIFFRACTION (0.88 Å)
Cite:Small-sized human immunodeficiency virus type-1 protease inhibitors containing allophenylnorstatine to explore the S2' pocket.
J.Med.Chem., 52, 2009
5XQN
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CRYSTAL STRUCTURE OF NOTCHED-FIN EELPOUT TYPE III ANTIFREEZE PROTEIN (NFE6, AFP), C2221 FORM.
Descriptor:Ice-structuring protein, SULFATE ION
Authors:Adachi, M., Kondo, H., Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2018-06-06
Method:X-RAY DIFFRACTION (1.19 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XQP
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CRYSTAL STRUCTURE OF NOTCHED-FIN EELPOUT TYPE III ANTIFREEZE PROTEIN (NFE6, AFP), P212121 FORM
Descriptor:Ice-structuring protein, SULFATE ION
Authors:Adachi, M., Shimizu, R., Shibazaki, C., Kondo, H., Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2018-06-06
Method:X-RAY DIFFRACTION (1 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XQR
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CRYSTAL STRUCTURE OF NOTCHED-FIN EELPOUT TYPE III ANTIFREEZE PROTEIN A20V MUTANT (NFE6, AFP), C2221 FORM
Descriptor:Ice-structuring protein, ACETATE ION
Authors:Adachi, M., Shimizu, R., Shibazaki, C., Kondo, H., Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2018-06-06
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XQU
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CRYSTAL STRUCTURE OF NOTCHED-FIN EELPOUT TYPE III ANTIFREEZE PROTEIN A20I MUTANT (NFE6, AFP), P212121 FORM
Descriptor:Ice-structuring protein
Authors:Adachi, M., Shimizu, R., Shibazaki, C., Kondo, H., Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2018-06-06
Method:X-RAY DIFFRACTION (1 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XQV
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CRYSTAL STRUCTURE OF NOTCHED-FIN EELPOUT TYPE III ANTIFREEZE PROTEIN A20L MUTANT (NFE6, AFP), P21 FORM
Descriptor:Ice-structuring protein
Authors:Adachi, M., Shimizu, R., Shibazaki, C., Kondo, H., Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2018-06-06
Method:X-RAY DIFFRACTION (0.97 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XR0
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CRYSTAL STRUCTURE OF NOTCHED-FIN EELPOUT TYPE III ANTIFREEZE PROTEIN A20T MUTANT (NFE6, AFP), P21 FORM
Descriptor:Ice-structuring protein
Authors:Adachi, M., Shimizu, R., Shibazaki, C., Kondo, H., Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2018-06-06
Method:X-RAY DIFFRACTION (0.98 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6IQG
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X-RAY CRYSTAL STRUCTURE OF FC AND PEPTIDE COMPLEX
Descriptor:Immunoglobulin gamma-1 heavy chain, 18-mer peptide G(HCS)DCAYHRGELVWCT(HCS)H(NH2), N-ACETYL-D-GLUCOSAMINE, ...
Authors:Adachi, M., Ito, Y.
Deposit date:2018-11-08
Release date:2019-02-13
Last modified:2019-04-03
Method:X-RAY DIFFRACTION (2.998 Å)
Cite:Site-Specific Chemical Conjugation of Antibodies by Using Affinity Peptide for the Development of Therapeutic Antibody Format.
Bioconjug. Chem., 30, 2019
6IQH
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X-RAY CRYSTAL STRUCTURE OF COVALENT-BONDED COMPLEX OF FC AND PEPTIDE
Descriptor:Immunoglobulin gamma-1 heavy chain, 17-mer peptide (GPDCAYHKGELVWCTFH), N-ACETYL-D-GLUCOSAMINE, ...
Authors:Adachi, M., Ito, Y.
Deposit date:2018-11-08
Release date:2019-02-13
Last modified:2019-04-03
Method:X-RAY DIFFRACTION (2.999 Å)
Cite:Site-Specific Chemical Conjugation of Antibodies by Using Affinity Peptide for the Development of Therapeutic Antibody Format.
Bioconjug. Chem., 30, 2019
6IXD
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X-RAY CRYSTAL STRUCTURE OF BPI-11 HIV-1 PROTEASE COMPLEX
Descriptor:Protease, GLYCEROL, SULFATE ION, ...
Authors:Adachi, M., Hidaka, K.
Deposit date:2018-12-10
Release date:2019-05-22
Method:X-RAY DIFFRACTION (1 Å)
Cite:Acquired Removability of Aspartic Protease Inhibitors by Direct Biotinylation.
Bioconjug.Chem., 2019
3WRT
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WILD TYPE BETA-LACTAMASE DERIVED FROM CHROMOHALOBACTER SP.560
Descriptor:Beta-lactamase
Authors:Arai, S., Yonezawa, Y., Okazaki, N., Matsumoto, F., Shimizu, R., Yamada, M., Adachi, M., Tamada, T., Tokunaga, H., Ishibashi, M., Tokunaga, M., Kuroki, R.
Deposit date:2014-02-27
Release date:2015-03-04
Last modified:2015-03-25
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure of a highly acidic beta-lactamase from the moderate halophile Chromohalobacter sp. 560 and the discovery of a Cs(+)-selective binding site
Acta Crystallogr.,Sect.D, 71, 2015
3WRZ
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N288Q-N321Q MUTANT BETA-LACTAMASE DERIVED FROM CHROMOHALOBACTER SP.560 (WITHOUT SOAKING)
Descriptor:Beta-lactamase, CALCIUM ION, CHLORIDE ION
Authors:Arai, S., Yonezawa, Y., Okazaki, N., Matsumoto, F., Shimizu, R., Yamada, M., Adachi, M., Tamada, T., Tokunaga, H., Ishibashi, M., Tokunaga, M., Kuroki, R.
Deposit date:2014-02-27
Release date:2015-03-04
Last modified:2015-03-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of a highly acidic beta-lactamase from the moderate halophile Chromohalobacter sp. 560 and the discovery of a Cs(+)-selective binding site
Acta Crystallogr.,Sect.D, 71, 2015