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1OM2
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BU of 1om2 by Molmil
SOLUTION NMR STRUCTURE OF THE MITOCHONDRIAL PROTEIN IMPORT RECEPTOR TOM20 FROM RAT IN A COMPLEX WITH A PRESEQUENCE PEPTIDE DERIVED FROM RAT ALDEHYDE DEHYDROGENASE (ALDH)
Descriptor: PROTEIN (MITOCHONDRIAL ALDEHYDE DEHYDROGENASE), PROTEIN (MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20)
Authors:Abe, Y, Shodai, T, Muto, T, Mihara, K, Torii, H, Nishikawa, S, Endo, T, Kohda, D.
Deposit date:1999-04-23
Release date:2000-02-02
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Structural basis of presequence recognition by the mitochondrial protein import receptor Tom20.
Cell(Cambridge,Mass.), 100, 2000
3WW6
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BU of 3ww6 by Molmil
Crystal Structure of hen egg white lysozyme mutant N46D/D52S
Descriptor: CHLORIDE ION, Lysozyme C
Authors:Abe, Y, Kubota, M, Ito, Y, Imoto, T, Ueda, T.
Deposit date:2014-06-17
Release date:2015-06-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Effect on catalysis by replacement of catalytic residue from hen egg white lysozyme to Venerupis philippinarum lysozyme.
Protein Sci., 25, 2016
3WW5
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BU of 3ww5 by Molmil
Crystal Structure of hen egg white lysozyme mutant N46E/D52S
Descriptor: CHLORIDE ION, Lysozyme C
Authors:Abe, Y, Kubota, M, Ito, Y, Imoto, T, Ueda, T.
Deposit date:2014-06-17
Release date:2015-06-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Effect on catalysis by replacement of catalytic residue from hen egg white lysozyme to Venerupis philippinarum lysozyme.
Protein Sci., 25, 2016
2D35
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BU of 2d35 by Molmil
Solution structure of Cell Division Reactivation Factor, CedA
Descriptor: Cell division activator cedA
Authors:Abe, Y, Watanabe, N, Matsuda, Y, Yoshida, Y, Katayama, T, Ueda, T.
Deposit date:2005-09-26
Release date:2006-12-12
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Structural Analysis and Molecular Interaction of Cell Division Reactivation Factor, CedA from Escherichia coli
To be Published
2E0G
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BU of 2e0g by Molmil
DnaA N-terminal domain
Descriptor: Chromosomal replication initiator protein dnaA
Authors:Abe, Y, Katayama, T, Ueda, T, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-10-07
Release date:2007-05-01
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structure and Function of DnaA N-Terminal Domains: Specific Sites and Mechanisms in Inter-DnaA Interaction and in DnaB Helicase Loading on oriC
To be Published
5YCQ
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BU of 5ycq by Molmil
Unique Specificity-Enhancing Factor for the AAA+ Lon Protease
Descriptor: Heat shock protein HspQ
Authors:Abe, Y, Shioi, S, Kita, S, Nakata, H, Maenaka, K, Kohda, D, Katayama, T, Ueda, T.
Deposit date:2017-09-08
Release date:2018-04-11
Method:X-RAY DIFFRACTION (2.503 Å)
Cite:X-ray crystal structure of Escherichia coli HspQ, a protein involved in the retardation of replication initiation
FEBS Lett., 591, 2017
2RUP
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BU of 2rup by Molmil
Solution structure of rat P2X4 receptor head domain
Descriptor: P2X purinoceptor 4
Authors:Abe, Y, Igawa, T, Tsuda, M, Inoue, K, Ueda, T.
Deposit date:2014-11-12
Release date:2015-02-04
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structure of the rat P2X4 receptor head domain involved in inhibitory metal binding
FEBS Lett., 589, 2015
2RU8
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BU of 2ru8 by Molmil
DnaT C-terminal domain
Descriptor: Primosomal protein 1
Authors:Abe, Y, Tani, J, Fujiyama, S, Urabe, M, Sato, K, Aramaki, T, Katayama, T, Ueda, T.
Deposit date:2014-01-29
Release date:2014-10-08
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structure and mechanism of the primosome protein DnaT-functional structures for homotrimerization, dissociation of ssDNA from the PriB·ssDNA complex, and formation of the DnaT·ssDNA complex.
Febs J., 281, 2014
1B9O
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BU of 1b9o by Molmil
HUMAN ALPHA-LACTALBUMIN, LOW TEMPERATURE FORM
Descriptor: CALCIUM ION, PROTEIN (ALPHA-LACTALBUMIN)
Authors:Harata, K, Abe, Y, Muraki, M.
Deposit date:1999-02-14
Release date:1999-03-31
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Crystallographic evaluation of internal motion of human alpha-lactalbumin refined by full-matrix least-squares method.
J.Mol.Biol., 287, 1999
5WQV
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BU of 5wqv by Molmil
Crystal structure of PriB mutant - S55A
Descriptor: Primosomal replication protein N
Authors:Fujiyama, S, Shiroishi, M, Katayama, T, Abe, Y, Ueda, T.
Deposit date:2016-11-28
Release date:2017-11-29
Last modified:2019-06-12
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Insight into the interaction between PriB and DnaT on bacterial DNA replication restart: Significance of the residues on PriB dimer interface and highly acidic region on DnaT.
Biochim Biophys Acta Proteins Proteom, 1867, 2019
4K9G
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BU of 4k9g by Molmil
1.55 A Crystal Structure of Macrophage Migration Inhibitory Factor bound to ISO-66 and a related compound
Descriptor: (4R,6Z)-6-(3-fluoro-4-hydroxyphenyl)-4-hydroxy-6-iminohexan-2-one, 1-[(5S)-3-(3-fluoro-4-hydroxyphenyl)-4,5-dihydro-1,2-oxazol-5-yl]propan-2-one, CHLORIDE ION, ...
Authors:Crichlow, G.V, Al-Abed, Y, Lolis, E.J.
Deposit date:2013-04-19
Release date:2014-09-24
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:ISO-66, a novel inhibitor of macrophage migration, shows efficacy in melanoma and colon cancer models.
INT J ONCOL., 45, 2014
1QQ2
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BU of 1qq2 by Molmil
CRYSTAL STRUCTURE OF A MAMMALIAN 2-CYS PEROXIREDOXIN, HBP23.
Descriptor: CHLORIDE ION, THIOREDOXIN PEROXIDASE 2
Authors:Hirotsu, S, Abe, Y, Okada, K, Nagahara, N, Hori, H, Nishino, T, Hakoshima, T.
Deposit date:1999-06-10
Release date:1999-10-29
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of a multifunctional 2-Cys peroxiredoxin heme-binding protein 23 kDa/proliferation-associated gene product.
Proc.Natl.Acad.Sci.USA, 96, 1999
2Z9S
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BU of 2z9s by Molmil
Crystal Structure Analysis of rat HBP23/Peroxiredoxin I, Cys52Ser mutant
Descriptor: Peroxiredoxin-1
Authors:Matsumura, T, Okamoto, K, Nishino, T, Abe, Y.
Deposit date:2007-09-25
Release date:2007-11-20
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Dimer-Oligomer Interconversion of Wild-type and Mutant Rat 2-Cys Peroxiredoxin: DISULFIDE FORMATION AT DIMER-DIMER INTERFACES IS NOT ESSENTIAL FOR DECAMERIZATION
J.Biol.Chem., 283, 2008
4YZF
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BU of 4yzf by Molmil
Crystal structure of the anion exchanger domain of human erythrocyte Band 3
Descriptor: 2,2'-ethane-1,2-diylbis{5-[(sulfanylmethyl)amino]benzenesulfonic acid}, Band 3 anion transport protein, FAB fragment of Immunoglobulin (IgG) molecule
Authors:Alguel, Y, Arakawa, T, Yugiri, T.K, Iwanari, H, Hatae, H, Iwata, M, Abe, Y, Hino, T, Suno, C.I, Kuma, H, Kang, D, Murata, T, Hamakubo, T, Cameron, A.D, Kobayashi, T, Hamasaki, N, Iwata, S.
Deposit date:2015-03-25
Release date:2015-11-04
Last modified:2015-11-18
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Crystal structure of the anion exchanger domain of human erythrocyte band 3.
Science, 350, 2015
1JSF
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BU of 1jsf by Molmil
FULL-MATRIX LEAST-SQUARES REFINEMENT OF HUMAN LYSOZYME
Descriptor: LYSOZYME, NITRATE ION
Authors:Harata, K, Abe, Y, Muraki, M.
Deposit date:1998-01-05
Release date:1998-04-29
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Full-matrix least-squares refinement of lysozymes and analysis of anisotropic thermal motion.
Proteins, 30, 1998
1JSE
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BU of 1jse by Molmil
FULL-MATRIX LEAST-SQUARES REFINEMENT OF TURKEY LYSOZYME
Descriptor: LYSOZYME, N-PROPANOL
Authors:Harata, K, Abe, Y, Muraki, M.
Deposit date:1998-01-05
Release date:1998-04-29
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.12 Å)
Cite:Full-matrix least-squares refinement of lysozymes and analysis of anisotropic thermal motion.
Proteins, 30, 1998
5A16
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BU of 5a16 by Molmil
Crystal structure of Fab4201 raised against Human Erythrocyte Anion Exchanger 1
Descriptor: FAB4201 HEAVY CHAIN
Authors:Arakawa, T, Kobayashi-Yugiri, T, Alguel, Y, Weyand, S, Iwanari, H, Hatae, H, Iwata, M, Abe, Y, Hino, T, Ikeda-Suno, C, Kuma, H, Kang, D, Murata, T, Hamakubo, T, Cameron, A, Kobayashi, T, Hamasaki, N, Iwata, S.
Deposit date:2015-04-28
Release date:2015-06-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of the Anion Exchanger Domain of Human Erythrocyte Band 3
Science, 350, 2015
1LJT
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BU of 1ljt by Molmil
Crystal Structure of Macrophage Migration Inhibitory Factor complexed with (S,R)-3-(4-hydroxyphenyl)-4,5-dihydro-5-isoxazole-acetic acid methyl ester (ISO-1)
Descriptor: 3-(4-HYDROXYPHENYL)-4,5-DIHYDRO-5-ISOXAZOLE-ACETIC ACID METHYL ESTER, Macrophage migration inhibitory factor
Authors:Lubetsky, J.B, Dios, A, Han, J, Aljabari, B, Ruzsicska, B, Mitchell, R, Lolis, E, Al-Abed, Y.
Deposit date:2002-04-22
Release date:2002-11-27
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Tautomerase Active Site of Macrophage Migration Inhibitory factor is a Potential Target for Discovery of Novel Anti-inflammatory Agents
J.Biol.Chem., 277, 2002
2OOW
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BU of 2oow by Molmil
MIF Bound to a Fluorinated OXIM Derivative
Descriptor: 3-FLUORO-4-HYDROXYBENZALDEHYDE O-(CYCLOHEXYLCARBONYL)OXIME, GLYCEROL, ISOPROPYL ALCOHOL, ...
Authors:Crichlow, G.V, Al-Abed, Y, Lolis, E.
Deposit date:2007-01-26
Release date:2007-06-05
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Alternative chemical modifications reverse the binding orientation of a pharmacophore scaffold in the active site of macrophage migration inhibitory factor.
J.Biol.Chem., 282, 2007
2OOZ
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BU of 2ooz by Molmil
Macrophage Migration Inhibitory Factor (MIF) Complexed with OXIM6 (an OXIM Derivative Not Containing a Ring in its R-group)
Descriptor: 4-HYDROXYBENZALDEHYDE O-(3,3-DIMETHYLBUTANOYL)OXIME, GLYCEROL, ISOPROPYL ALCOHOL, ...
Authors:Crichlow, G.V, Al-Abed, Y, Lolis, E.
Deposit date:2007-01-26
Release date:2007-06-05
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Alternative chemical modifications reverse the binding orientation of a pharmacophore scaffold in the active site of macrophage migration inhibitory factor.
J.Biol.Chem., 282, 2007
2OOH
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BU of 2ooh by Molmil
Crystal Structure of MIF bound to a Novel Inhibitor, OXIM-11
Descriptor: 4-HYDROXYBENZALDEHYDE O-(CYCLOHEXYLCARBONYL)OXIME, GLYCEROL, Macrophage migration inhibitory factor, ...
Authors:Crichlow, G.V, Al-Abed, Y, Lolis, E.
Deposit date:2007-01-25
Release date:2007-06-05
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Alternative chemical modifications reverse the binding orientation of a pharmacophore scaffold in the active site of macrophage migration inhibitory factor.
J.Biol.Chem., 282, 2007
2RT6
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BU of 2rt6 by Molmil
Backbone 1H, 13C, and 15N Chemical Shift Assignments for PriC N-terminal domain
Descriptor: Primosomal replication protein N''
Authors:Aramaki, T, Abe, Y, Katayama, T, Ueda, T.
Deposit date:2013-04-24
Release date:2013-08-07
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structure of the N-terminal domain of a replication restart primosome factor, PriC, in Escherichia coli.
Protein Sci., 22, 2013
1WOC
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BU of 1woc by Molmil
Crystal structure of PriB
Descriptor: Primosomal replication protein n
Authors:Shioi, S, Ose, T, Maenaka, K, Abe, Y, Kohda, D, Katayama, T, Ueda, T.
Deposit date:2004-08-13
Release date:2005-01-25
Last modified:2012-12-05
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a biologically functional form of PriB from Escherichia coli reveals a potential single-stranded DNA-binding site
Biochem.Biophys.Res.Commun., 326, 2005
5Y25
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BU of 5y25 by Molmil
EGFR kinase domain mutant (T790M/L858R) with covalent ligand NS-062
Descriptor: (2R)-N-[4-[(3-chloranyl-4-fluoranyl-phenyl)amino]-7-(3-morpholin-4-ylpropoxy)quinazolin-6-yl]-1-(2-fluoranylethanoyl)pyrrolidine-2-carboxamide, Epidermal growth factor receptor
Authors:Shiroishi, M, Abe, Y, Caaveiro, J.M.M, Sakamoto, S, Morimoto, S, Fuchida, H, Shindo, N, Ojida, A.
Deposit date:2017-07-24
Release date:2018-07-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.102 Å)
Cite:Selective and reversible modification of kinase cysteines with chlorofluoroacetamides.
Nat.Chem.Biol., 15, 2019
2DQA
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BU of 2dqa by Molmil
Crystal Structure of Tapes japonica Lysozyme
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Lysozyme, PLATINUM (II) ION, ...
Authors:Goto, T, Kakuta, Y, Abe, Y, Takeshita, K, Imoto, T, Ueda, T.
Deposit date:2006-05-24
Release date:2007-06-12
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure of Tapes japonica Lysozyme with Substrate Analogue: STRUCTURAL BASIS OF THE CATALYTIC MECHANISM AND MANIFESTATION OF ITS CHITINASE ACTIVITY ACCOMPANIED BY QUATERNARY STRUCTURAL CHANGE
J.Biol.Chem., 282, 2007

 

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