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2XAX
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BU of 2xax by Molmil
Ribonucleotide reductase Y730NO2Y and Y731A modified R1 subunit of E. coli
Descriptor: RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT ALPHA, RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT BETA
Authors:Yokoyama, K, Uhlin, U, Stubbe, J.
Deposit date:2010-04-01
Release date:2010-04-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Site-Specific Incorporation of 3-Nitrotyrosine as a Probe of Pk(A) Perturbation of Redox-Active Tyrosines in Ribonucleotide Reductase.
J.Am.Chem.Soc., 132, 2010
2XAW
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Ribonucleotide reductase Y730NO2Y and Y731F modified R1 subunit of E. coli
Descriptor: RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT ALPHA, RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT BETA
Authors:Yokoyama, K, Uhlin, U, Stubbe, J.
Deposit date:2010-03-31
Release date:2010-04-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Site-Specific Incorporation of 3-Nitrotyrosine as a Probe of Pk(A) Perturbation of Redox-Active Tyrosines in Ribonucleotide Reductase.
J.Am.Chem.Soc., 132, 2010
2XAZ
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BU of 2xaz by Molmil
Ribonucleotide reductase Y730NO2Y and C439S modified R1 subunit of E. coli
Descriptor: RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT ALPHA, RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT BETA
Authors:Yokoyama, K, Uhlin, U, Stubbe, J.
Deposit date:2010-04-01
Release date:2010-04-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Site-Specific Incorporation of 3-Nitrotyrosine as a Probe of Pk(A) Perturbation of Redox-Active Tyrosines in Ribonucleotide Reductase.
J.Am.Chem.Soc., 132, 2010
2XAV
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BU of 2xav by Molmil
Ribonucleotide reductase Y731NO2Y and Y730F modified R1 subunit of E. coli
Descriptor: RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT ALPHA, RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT BETA
Authors:Yokoyama, K, Uhlin, U, Stubbe, J.
Deposit date:2010-03-31
Release date:2010-04-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Site-Specific Incorporation of 3-Nitrotyrosine as a Probe of Pk(A) Perturbation of Redox-Active Tyrosines in Ribonucleotide Reductase.
J.Am.Chem.Soc., 132, 2010
2XAP
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BU of 2xap by Molmil
Ribonucleotide reductase Y731NO2Y modified R1 subunit of E. coli to 2. 1 A resolution
Descriptor: RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT ALPHA, RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT BETA
Authors:Yokoyama, K, Uhlin, U, Stubbe, J.
Deposit date:2010-03-31
Release date:2010-04-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Site-Specific Incorporation of 3-Nitrotyrosine as a Probe of Pk(A) Perturbation of Redox-Active Tyrosines in Ribonucleotide Reductase.
J.Am.Chem.Soc., 132, 2010
2XAK
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BU of 2xak by Molmil
Ribonucleotide reductase Y730NO2Y modified R1 subunit of E. coli
Descriptor: RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT ALPHA, RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT BETA
Authors:Yokoyama, K, Uhlin, U, Stubbe, J.
Deposit date:2010-03-31
Release date:2010-04-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Site-Specific Incorporation of 3-Nitrotyrosine as a Probe of Pk(A) Perturbation of Redox-Active Tyrosines in Ribonucleotide Reductase.
J.Am.Chem.Soc., 132, 2010
2X0X
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BU of 2x0x by Molmil
Ribonucleotide reductase R1 subunit of E. coli to 2.3 A resolution
Descriptor: RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT ALPHA, RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT BETA, SULFATE ION
Authors:Yokoyama, K, Uhlin, U, Stubbe, J.
Deposit date:2009-12-18
Release date:2010-01-26
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Site-Specific Incorporation of 3-Nitrotyrosine as a Probe of Pk(A) Perturbation of Redox-Active Tyrosines in Ribonucleotide Reductase.
J.Am.Chem.Soc., 132, 2010
2XAY
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BU of 2xay by Molmil
Ribonucleotide reductase Y730NO2Y and C439A modified R1 subunit of E. coli
Descriptor: RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT ALPHA, RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT BETA
Authors:Yokoyama, K, Uhlin, U, Stubbe, J.
Deposit date:2010-04-01
Release date:2010-04-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Site-Specific Incorporation of 3-Nitrotyrosine as a Probe of Pk(A) Perturbation of Redox-Active Tyrosines in Ribonucleotide Reductase.
J.Am.Chem.Soc., 132, 2010
2XOF
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BU of 2xof by Molmil
Ribonucleotide reductase Y122NO2Y modified R2 subunit of E. coli
Descriptor: MU-OXO-DIIRON, RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT BETA
Authors:Yokoyama, K, Uhlin, U, Stubbe, J.
Deposit date:2010-08-15
Release date:2010-08-25
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A Hot Oxidant, 3-No(2)Y(122) Radical, Unmasks Conformational Gating in Ribonucleotide Reductase.
J.Am.Chem.Soc., 132, 2010
4V4O
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BU of 4v4o by Molmil
Crystal Structure of the Chaperonin Complex Cpn60/Cpn10/(ADP)7 from Thermus Thermophilus
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DIMETHYL SULFOXIDE, MAGNESIUM ION, ...
Authors:Shimamura, T, Koike-Takeshita, A, Yokoyama, K, Masui, R, Murai, N, Yoshida, M, Taguchi, H, Iwata, S.
Deposit date:2004-05-23
Release date:2014-07-09
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of the native chaperonin complex from Thermus thermophilus revealed unexpected asymmetry at the cis-cavity
STRUCTURE, 12, 2004
7STL
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BU of 7stl by Molmil
Chitin Synthase 2 from Candida albicans at the apo state
Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, Chitin synthase
Authors:Ren, Z, Chhetri, A, Lee, S, Yokoyama, K.
Deposit date:2021-11-14
Release date:2022-07-13
Last modified:2022-07-27
Method:ELECTRON MICROSCOPY (2.95 Å)
Cite:Structural basis for inhibition and regulation of a chitin synthase from Candida albicans.
Nat.Struct.Mol.Biol., 29, 2022
7STM
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BU of 7stm by Molmil
Chitin Synthase 2 from Candida albicans bound to UDP-GlcNAc
Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, Chitin synthase, MAGNESIUM ION, ...
Authors:Ren, Z, Chhetri, A, Lee, S, Yokoyama, K.
Deposit date:2021-11-14
Release date:2022-07-13
Last modified:2022-07-27
Method:ELECTRON MICROSCOPY (3.02 Å)
Cite:Structural basis for inhibition and regulation of a chitin synthase from Candida albicans.
Nat.Struct.Mol.Biol., 29, 2022
7STN
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BU of 7stn by Molmil
Chitin Synthase 2 from Candida albicans bound to Nikkomycin Z
Descriptor: (2S)-{[(2S,3S,4S)-2-amino-4-hydroxy-4-(5-hydroxypyridin-2-yl)-3-methylbutanoyl]amino}[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxyoxolan-2-yl]acetic acid (non-preferred name), 1,2-Distearoyl-sn-glycerophosphoethanolamine, Chitin synthase
Authors:Ren, Z, Chhetri, A, Lee, S, Yokoyama, K.
Deposit date:2021-11-14
Release date:2022-07-13
Last modified:2022-07-27
Method:ELECTRON MICROSCOPY (3.19 Å)
Cite:Structural basis for inhibition and regulation of a chitin synthase from Candida albicans.
Nat.Struct.Mol.Biol., 29, 2022
7STO
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BU of 7sto by Molmil
Chitin Synthase 2 from Candida albicans bound to polyoxin D
Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, 1-{(2R,3R,4S,5R)-5-[(S)-{[(2S,3S,4S)-2-amino-5-(carbamoyloxy)-3,4-dihydroxypentanoyl]amino}(carboxy)methyl]-3,4-dihydroxyoxolan-2-yl}-2,4-dioxo-1,2,3,4-tetrahydropyrimidine-5-carboxylic acid (non-preferred name), Chitin synthase
Authors:Ren, Z, Chhetri, A, Lee, S, Yokoyama, K.
Deposit date:2021-11-14
Release date:2022-07-13
Last modified:2022-07-27
Method:ELECTRON MICROSCOPY (3.15 Å)
Cite:Structural basis for inhibition and regulation of a chitin synthase from Candida albicans.
Nat.Struct.Mol.Biol., 29, 2022
8GXU
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BU of 8gxu by Molmil
1 ATP-bound V1EG of V/A-ATPase from Thermus thermophilus
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, SULFATE ION, V-type ATP synthase alpha chain, ...
Authors:Nakanishi, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K.
Deposit date:2022-09-21
Release date:2023-01-25
Last modified:2023-02-15
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Cryo-EM analysis of V/A-ATPase intermediates reveals the transition of the ground-state structure to steady-state structures by sequential ATP binding.
J.Biol.Chem., 299, 2023
8GXY
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BU of 8gxy by Molmil
2 sulfate-bound V1EG of V/A-ATPase from Thermus thermophilus.
Descriptor: SULFATE ION, V-type ATP synthase alpha chain, V-type ATP synthase beta chain, ...
Authors:Nakanishi, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K.
Deposit date:2022-09-21
Release date:2023-01-25
Last modified:2023-02-15
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Cryo-EM analysis of V/A-ATPase intermediates reveals the transition of the ground-state structure to steady-state structures by sequential ATP binding.
J.Biol.Chem., 299, 2023
8GXW
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BU of 8gxw by Molmil
2 ATP-bound V1EG of V/A-ATPase from Thermus thermophilus
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, SULFATE ION, ...
Authors:Nakanishi, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K.
Deposit date:2022-09-21
Release date:2023-01-25
Last modified:2023-02-15
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Cryo-EM analysis of V/A-ATPase intermediates reveals the transition of the ground-state structure to steady-state structures by sequential ATP binding.
J.Biol.Chem., 299, 2023
8GXZ
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BU of 8gxz by Molmil
1 sulfate and 1 ATP bound V1EG of V/A-ATPase from Thermus thermophilus.
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, SULFATE ION, ...
Authors:Nakanishi, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K.
Deposit date:2022-09-21
Release date:2023-01-25
Last modified:2023-02-15
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Cryo-EM analysis of V/A-ATPase intermediates reveals the transition of the ground-state structure to steady-state structures by sequential ATP binding.
J.Biol.Chem., 299, 2023
8GXX
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BU of 8gxx by Molmil
3 nucleotide-bound V1EG of V/A-ATPase from Thermus thermophilus.
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Nakanishi, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K.
Deposit date:2022-09-21
Release date:2023-01-25
Last modified:2023-02-15
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Cryo-EM analysis of V/A-ATPase intermediates reveals the transition of the ground-state structure to steady-state structures by sequential ATP binding.
J.Biol.Chem., 299, 2023
1G0D
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BU of 1g0d by Molmil
CRYSTAL STRUCTURE OF RED SEA BREAM TRANSGLUTAMINASE
Descriptor: PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE, SULFATE ION
Authors:Noguchi, K, Ishikawa, K, Yokoyama, K, Ohtsuka, T, Nio, N, Suzuki, E.
Deposit date:2000-10-06
Release date:2001-05-23
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of red sea bream transglutaminase.
J.Biol.Chem., 276, 2001
4PYA
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BU of 4pya by Molmil
MoaC K51A in complex with 3',8-cH2GTP
Descriptor: (8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate, 1,2-ETHANEDIOL, Molybdenum cofactor biosynthesis protein MoaC
Authors:Tonthat, N.K, Hover, B.M, Yokoyama, K, Schumacher, M.A.
Deposit date:2014-03-26
Release date:2015-04-29
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.789 Å)
Cite:Mechanism of pyranopterin ring formation in molybdenum cofactor biosynthesis.
Proc.Natl.Acad.Sci.USA, 112, 2015
4PYD
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BU of 4pyd by Molmil
MoaC in complex with cPMP crystallized in space group P212121
Descriptor: (2R,4AR,5AR,11AR,12AS)-8-AMINO-2-HYDROXY-4A,5A,9,11,11A,12A-HEXAHYDRO[1,3,2]DIOXAPHOSPHININO[4',5':5,6]PYRANO[3,2-G]PTERIDINE-10,12(4H,6H)-DIONE 2-OXIDE, 1,2-ETHANEDIOL, 2,3-DIHYDROXY-1,4-DITHIOBUTANE, ...
Authors:Tonthat, N.K, Hover, B.M, Yokoyama, K, Schumacher, M.A.
Deposit date:2014-03-26
Release date:2015-04-29
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.186 Å)
Cite:Mechanism of pyranopterin ring formation in molybdenum cofactor biosynthesis.
Proc.Natl.Acad.Sci.USA, 112, 2015
3GQB
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BU of 3gqb by Molmil
Crystal Structure of the A3B3 complex from V-ATPase
Descriptor: V-type ATP synthase alpha chain, V-type ATP synthase beta chain
Authors:Meher, M, Akimoto, S, Iwata, M, Nagata, K, Hori, Y, Yoshida, M, Yokoyama, S, Iwata, S, Yokoyama, K.
Deposit date:2009-03-24
Release date:2009-11-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of A(3)B(3) complex of V-ATPase from Thermus thermophilus.
Embo J., 28, 2009
1R5Z
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BU of 1r5z by Molmil
Crystal Structure of Subunit C of V-ATPase
Descriptor: V-type ATP synthase subunit C
Authors:Iwata, M, Imamura, H, Stambouli, E, Ikeda, C, Tamakoshi, M, Nagata, K, Makyio, H, Hankamer, B, Barber, J, Yoshida, M, Yokoyama, K, Iwata, S.
Deposit date:2003-10-14
Release date:2004-01-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of a central stalk subunit C and reversible association/dissociation of vacuole-type ATPase.
Proc.Natl.Acad.Sci.Usa, 101, 2004
8HHB
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BU of 8hhb by Molmil
F1 domain of FoF1-ATPase from Bacillus PS3,step waiting,lowATP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ...
Authors:Nakano, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K.
Deposit date:2022-11-16
Release date:2023-07-19
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Rotation mechanism of ATP synthases driven by ATP hydrolysis
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