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7JLH
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BU of 7jlh by Molmil
Structure of Centromeric Satellite III Non-canonical Duplex
Descriptor: ACETATE ION, DNA AATGG, MAGNESIUM ION
Authors:Yatsunyk, L.A, Chen, E.V.
Deposit date:2020-07-29
Release date:2021-08-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Crystal Structure of 4-repeat Satellite III Sequence with Non-Canonical Base Interactions
To Be Published
2PS3
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BU of 2ps3 by Molmil
Structure and metal binding properties of ZnuA, a periplasmic zinc transporter from Escherichia coli
Descriptor: High-affinity zinc uptake system protein znuA
Authors:Yatsunyk, L.A, Kim, L.R, Vorontsov, I.I, Rosenzweig, A.C.
Deposit date:2007-05-04
Release date:2007-06-05
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Structure and metal binding properties of ZnuA, a periplasmic zinc transporter from Escherichia coli.
J.Biol.Inorg.Chem., 13, 2008
2PRS
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BU of 2prs by Molmil
Structure and metal binding properties of ZnuA, a periplasmic zinc transporter from Escherichia coli
Descriptor: High-affinity zinc uptake system protein znuA, ISOPROPYL ALCOHOL, ZINC ION
Authors:Yatsunyk, L.A, Kim, L.R, Vorontsov, I.I, Rosenzweig, A.C.
Deposit date:2007-05-04
Release date:2007-06-05
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure and metal binding properties of ZnuA, a periplasmic zinc transporter from Escherichia coli.
J.Biol.Inorg.Chem., 13, 2008
2PS9
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BU of 2ps9 by Molmil
Structure and metal binding properties of ZnuA, a periplasmic zinc transporter from Escherichia coli
Descriptor: COBALT (II) ION, High-affinity zinc uptake system protein znuA
Authors:Yatsunyk, L.A, Kim, L.R, Vorontsov, I.I, Rosenzweig, A.C.
Deposit date:2007-05-04
Release date:2007-06-05
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structure and metal binding properties of ZnuA, a periplasmic zinc transporter from Escherichia coli.
J.Biol.Inorg.Chem., 13, 2008
2PS0
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BU of 2ps0 by Molmil
Structure and metal binding properties of ZnuA, a periplasmic zinc transporter from Escherichia coli
Descriptor: High-affinity zinc uptake system protein znuA, ZINC ION
Authors:Yatsunyk, L.A, Kim, L.R, Vorontsov, I.I, Rosenzweig, A.C.
Deposit date:2007-05-04
Release date:2007-06-05
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and metal binding properties of ZnuA, a periplasmic zinc transporter from Escherichia coli.
J.Biol.Inorg.Chem., 13, 2008
6XT7
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BU of 6xt7 by Molmil
Tel25 Hybrid Four-quartet G-quadruplex with K+
Descriptor: DNA (25-MER), MAGNESIUM ION, POTASSIUM ION, ...
Authors:Yatsunyk, L.A, McCarthy, S.E.
Deposit date:2020-07-17
Release date:2020-12-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:The first crystal structures of hybrid and parallel four-tetrad intramolecular G-quadruplexes.
Nucleic Acids Res., 50, 2022
7LL0
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BU of 7ll0 by Molmil
Crystal structure of a four-tetrad, parallel, and K+ stabilized Tetrahymena thermophila telomeric G-quadruplex
Descriptor: 26-mer DNA, POTASSIUM ION
Authors:Yatsunyk, L.A, Chen, E.V.
Deposit date:2021-02-03
Release date:2021-07-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:The first crystal structures of hybrid and parallel four-tetrad intramolecular G-quadruplexes.
Nucleic Acids Res., 50, 2022
8CXF
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BU of 8cxf by Molmil
Crystal structure of an i-motif from the HRAS promoter region
Descriptor: 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE, HRAS DNA
Authors:Yatsunyk, L.A, Li, K.S.
Deposit date:2022-05-20
Release date:2023-05-10
Last modified:2023-06-28
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Crystal Structure of an i-Motif from the HRAS Oncogene Promoter.
Angew.Chem.Int.Ed.Engl., 62, 2023
6P45
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BU of 6p45 by Molmil
Crystal structure of the G-quadruplex formed by (TGGGT)4 in complex with N-methylmesoporphryin IX
Descriptor: DNA (5'-D(P*TP*GP*GP*GP*TP*TP*GP*GP*GP*TP*TP*GP*GP*GP*TP*TP*GP*GP*GP*T)-3'), N-METHYLMESOPORPHYRIN, POTASSIUM ION
Authors:Yatsunyk, L.A, Lin, L.Y.
Deposit date:2019-05-26
Release date:2020-05-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.339 Å)
Cite:Biophysical and X-ray structural studies of the (GGGTT)3GGG G-quadruplex in complex with N-methyl mesoporphyrin IX.
Plos One, 15, 2020
6PNK
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BU of 6pnk by Molmil
Crystal structure of the G-quadruplex formed by (GGGTT)3GGG in complex with N-methylmesoporphryin IX
Descriptor: DNA (5'-D(P*GP*GP*GP*TP*TP*GP*GP*GP*TP*TP*GP*GP*GP*TP*TP*GP*GP*G)-3'), FORMIC ACID, N-METHYLMESOPORPHYRIN, ...
Authors:Yatsunyk, L.A, Lin, L.Y.
Deposit date:2019-07-02
Release date:2020-07-08
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Biophysical and X-ray structural studies of the (GGGTT)3GGG G-quadruplex in complex with N-methyl mesoporphyrin IX.
Plos One, 15, 2020
7KLP
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BU of 7klp by Molmil
Crystal structure of a three-tetrad, parallel, K+ stabilized human telomeric G-quadruplex
Descriptor: HEXAETHYLENE GLYCOL, POTASSIUM ION, telomeric DNA
Authors:Yatsunyk, L.A, Li, K.S, Chen, E.V.
Deposit date:2020-10-30
Release date:2020-12-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Water spines and networks in G-quadruplex structures.
Nucleic Acids Res., 49, 2021
8DHC
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BU of 8dhc by Molmil
Crystal structure of an i-motif from the HRAS promoter region
Descriptor: 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE, HRAS DNA
Authors:Yatsunyk, L.A, Li, K.S.
Deposit date:2022-06-27
Release date:2023-05-10
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Crystal Structure of an i-Motif from the HRAS Oncogene Promoter.
Angew.Chem.Int.Ed.Engl., 62, 2023
7JKU
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BU of 7jku by Molmil
Crystal structure of a four-tetrad, parallel, and K+ stabilized Tetrahymena thermophila telomeric G-quadruplex
Descriptor: 26-mer DNA, POTASSIUM ION
Authors:Yatsunyk, L.A, McCarthy, S.E, Beseiso, D, Gallagher, E.P, Chen, E.V, Miao, J.
Deposit date:2020-07-28
Release date:2021-07-07
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:The first crystal structures of hybrid and parallel four-tetrad intramolecular G-quadruplexes.
Nucleic Acids Res., 50, 2022
6FTU
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BU of 6ftu by Molmil
Structure of a Quadruplex forming sequence from D. discoideum
Descriptor: DNA (26-MER), POTASSIUM ION
Authors:Guedin, A, Linda, L, Armane, S, Lacroix, L, Mergny, J.L, Thore, S, Yatsunyk, L.A.
Deposit date:2018-02-23
Release date:2018-04-18
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Quadruplexes in 'Dicty': crystal structure of a four-quartet G-quadruplex formed by G-rich motif found in the Dictyostelium discoideum genome.
Nucleic Acids Res., 46, 2018
1U97
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BU of 1u97 by Molmil
Solution Structure of Apo Yeast Cox17
Descriptor: Cytochrome c oxidase copper chaperone
Authors:Abajian, C, Yatsunyk, L.A, Ramirez, B.E, Rosenzweig, A.C.
Deposit date:2004-08-09
Release date:2004-10-05
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Yeast cox17 solution structure and Copper(I) binding.
J.Biol.Chem., 279, 2004
6W9P
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BU of 6w9p by Molmil
Tel26 Parallel Four-quartet G-quadruplex with K+
Descriptor: DNA (5'-D(P*GP*TP*TP*GP*GP*GP*GP*TP*TP*GP*GP*GP*GP*TP*TP*GP*GP*GP*GP*TP*TP*GP*GP*GP*GP*T)-3'), POTASSIUM ION, SODIUM ION
Authors:McCarthy, S.E, Yatsunyk, L.A, Beseiso, D, Miao, J.
Deposit date:2020-03-23
Release date:2021-03-31
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:The first crystal structures of hybrid and parallel four-tetrad intramolecular G-quadruplexes.
Nucleic Acids Res., 50, 2022
2IN4
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BU of 2in4 by Molmil
Crystal Structure of Myoglobin with Charge Neutralized Heme, ZnDMb-dme
Descriptor: Myoglobin, SULFATE ION, ZINC(II)-DEUTEROPORPHYRIN DIMETHYLESTER
Authors:Wheeler, K.E, Nocek, J.M, Cull, D.A, Yatsunyk, L.A, Rosenzweig, A.C, Hoffman, B.M.
Deposit date:2006-10-05
Release date:2006-10-31
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Dynamic docking of cytochrome b5 with myoglobin and alpha-hemoglobin: heme-neutralization "squares" and the binding of electron-transfer-reactive configurations.
J.Am.Chem.Soc., 129, 2007
1U96
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BU of 1u96 by Molmil
Solution Structure of Yeast Cox17 with Copper Bound
Descriptor: COPPER (I) ION, Cytochrome c oxidase copper chaperone
Authors:Abajian, C, Yatsunyk, L.A, Ramirez, B.E, Rosenzweig, A.C.
Deposit date:2004-08-09
Release date:2004-10-05
Last modified:2017-12-20
Method:SOLUTION NMR
Cite:Yeast cox17 solution structure and Copper(I) binding.
J.Biol.Chem., 279, 2004
8D78
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BU of 8d78 by Molmil
Crystal structure of a Ba stabilized four-tetrad, parallel Tetrahymena thermophila telomeric G-quadruplex in complex with N-methyl mesoporphyrin IX
Descriptor: BARIUM ION, DNA (5'-D(*GP*GP*GP*GP*TP*TP*GP*GP*GP*GP*TP*TP*GP*GP*GP*GP*TP*TP*GP*GP*GP*G)-3'), N-METHYLMESOPORPHYRIN
Authors:Chen, E.V, Beseiso, D, Yatsunyk, L.A.
Deposit date:2022-06-07
Release date:2023-07-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Biophysical and structural characterization of telomeric G-quadruplexes from Tetrahymena thermophila in complex with N-Methyl Mesoporphyrin IX
To Be Published
8D79
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BU of 8d79 by Molmil
Crystal structure of a four-tetrad, parallel, and Na+ stabilized Tetrahymena thermophila telomeric G-quadruplex in complex with N-methyl mesoporphyrin IX
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, DNA (5'-D(*TP*GP*GP*GP*GP*TP*TP*GP*GP*GP*GP*TP*TP*GP*GP*GP*GP*TP*TP*GP*GP*GP*GP*T)-3'), N-METHYLMESOPORPHYRIN, ...
Authors:Chen, E.V, Beseiso, D, Yatsunyk, L.A.
Deposit date:2022-06-07
Release date:2023-07-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Biophysical and structural characterization of telomeric G-quadruplexes from Tetrahymena thermophila in complex with N-Methyl Mesoporphyrin IX
To Be Published
8EDP
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BU of 8edp by Molmil
Crystal structure of a three-tetrad, parallel, and K+ stabilized homopurine G-quadruplex from human chromosome 7
Descriptor: COBALT HEXAMMINE(III), DNA (5'-D(*AP*GP*GP*GP*AP*AP*AP*AP*GP*GP*GP*GP*AP*GP*GP*GP*AP*AP*AP*AP*GP*GP*GP*G)-3'), N-METHYLMESOPORPHYRIN, ...
Authors:Ye, M, Yatsunyk, L.A.
Deposit date:2022-09-05
Release date:2022-12-28
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Homopurine guanine-rich sequences in complex with N-methyl mesoporphyrin IX form parallel G-quadruplex dimers and display a unique symmetry tetrad.
Bioorg.Med.Chem., 77, 2022
8EBO
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BU of 8ebo by Molmil
Homopurine parallel G-quadruplex from human chromosome 7 stabilized by K+ ions
Descriptor: COBALT (III) ION, DNA (5'-D(*GP*AP*GP*GP*GP*AP*GP*GP*GP*AP*GP*GP*GP*AP*AP*AP*AP*GP*GP*GP*GP*A)-3'), N-METHYLMESOPORPHYRIN, ...
Authors:Chen, E.V, Yatsunyk, L.A.
Deposit date:2022-08-31
Release date:2022-12-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Homopurine guanine-rich sequences in complex with N-methyl mesoporphyrin IX form parallel G-quadruplex dimers and display a unique symmetry tetrad.
Bioorg.Med.Chem., 77, 2022
8G2N
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BU of 8g2n by Molmil
Crystal structure of Tetrahymena thermophila G-rich DNA with novel ligand PyDH2
Descriptor: 4,4'-{pyridine-2,6-diylbis[carbonyl-(1E)-hydrazin-2-yl-1-ylidene-(E)-methanylylidene]}bis(1-methylquinolin-1-ium), G-rich DNA, MAGNESIUM ION, ...
Authors:Martin, K.N, Yatsunyk, L.A.
Deposit date:2023-02-06
Release date:2024-02-14
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Crystal structure of Tetrahymena thermophila G-rich DNA with novel ligand PyDH2
To be published
4FXM
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BU of 4fxm by Molmil
Crystal structure of the complex of a human telomeric repeat G-quadruplex and N-methyl mesoporphyrin IX (P21212)
Descriptor: DNA (5'-D(*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3'), N-METHYLMESOPORPHYRIN, POTASSIUM ION
Authors:Nicoludis, J.M, Miller, S.T, Jeffrey, P, Lawton, T.J, Rosenzweig, A.C, Yatsunyk, L.A.
Deposit date:2012-07-03
Release date:2012-12-26
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.651 Å)
Cite:Optimized End-Stacking Provides Specificity of N-Methyl Mesoporphyrin IX for Human Telomeric G-Quadruplex DNA.
J.Am.Chem.Soc., 134, 2012
4G0F
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BU of 4g0f by Molmil
Crystal structure of the complex of a human telomeric repeat G-quadruplex and N-methyl mesoporphyrin IX (P6)
Descriptor: DNA (5'-D(*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3'), N-METHYLMESOPORPHYRIN, POTASSIUM ION
Authors:Nicoludis, J.M, Miller, S.T, Jeffrey, P, Lawton, T.J, Rosenzweig, A.C, Yatsunyk, L.A.
Deposit date:2012-07-09
Release date:2012-12-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Optimized End-Stacking Provides Specificity of N-Methyl Mesoporphyrin IX for Human Telomeric G-Quadruplex DNA.
J.Am.Chem.Soc., 134, 2012

 

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