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1F2D
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1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE
Descriptor:1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE, SULFATE ION, PYRIDOXAL-5'-PHOSPHATE
Authors:Yao, M., Ose, T., Sugimoto, H., Horiuchi, A., Nakagawa, A., Yokoi, D., Murakami, T., Honma, M., Wakatsuki, S., Tanaka, I.
Deposit date:2000-05-24
Release date:2000-12-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of 1-aminocyclopropane-1-carboxylate deaminase from Hansenula saturnus.
J.Biol.Chem., 275, 2000
1IZ6
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CRYSTAL STRUCTURE OF TRANSLATION INITIATION FACTOR 5A FROM PYROCOCCUS HORIKOSHII
Descriptor:Initiation Factor 5A
Authors:Yao, M., Ohsawa, A., Kikukawa, S., Tanaka, I., Kimura, M.
Deposit date:2002-09-25
Release date:2003-01-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Hyperthermophilic Archaeal Initiation Factor 5A: A Homologue of Eukaryotic Initiation Factor 5A (eIF-5A)
J.BIOCHEM.(TOKYO), 133, 2003
1WLS
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CRYSTAL STRUCTURE OF L-ASPARAGINASE I HOMOLOGUE PROTEIN FROM PYROCOCCUS HORIKOSHII
Descriptor:L-asparaginase
Authors:Yao, M., Morita, H., Yasutake, Y., Tanaka, I.
Deposit date:2004-06-29
Release date:2005-03-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:Structure of the type I L-asparaginase from the hyperthermophilic archaeon Pyrococcus horikoshii at 2.16 angstroms resolution.
Acta Crystallogr.,Sect.D, 61, 2005
2ZQ0
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CRYSTAL STRUCTURE OF SUSB COMPLEXED WITH ACARBOSE
Descriptor:Alpha-glucosidase (Alpha-glucosidase SusB), ALPHA-ACARBOSE, CALCIUM ION
Authors:Yao, M., Tanaka, I., Kitamura, M.
Deposit date:2008-07-31
Release date:2008-10-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural and functional analysis of a glycoside hydrolase family 97 enzyme from Bacteroides thetaiotaomicron.
J.Biol.Chem., 283, 2008
1V7L
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STRUCTURE OF 3-ISOPROPYLMALATE ISOMERASE SMALL SUBUNIT FROM PYROCOCCUS HORIKOSHII
Descriptor:3-isopropylmalate dehydratase small subunit
Authors:Yao, M., Kirita, T., Sakai, N., Tanaka, I.
Deposit date:2003-12-18
Release date:2004-11-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Crystal Structure of the Pyrococcus horikoshii Isopropylmalate Isomerase Small Subunit Provides Insight into the Dual Substrate Specificity of the Enzyme
J.Mol.Biol., 344, 2004
1VGJ
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CRYSTAL STRUCTURE OF 2'-5' RNA LIGASE FROM PYROCOCCUS HORIKOSHII
Descriptor:Hypothetical protein PH0099
Authors:Yao, M., Morita, H., Okada, A., Tanaka, I.
Deposit date:2004-04-27
Release date:2005-06-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:The structure of Pyrococcus horikoshii 2'-5' RNA ligase at 1.94 A resolution reveals a possible open form with a wider active-site cleft
ACTA CRYSTALLOGR.,SECT.F, 62, 2006
1J1F
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CRYSTAL STRUCTURE OF THE RNASE MC1 MUTANT N71T IN COMPLEX WITH 5'-GMP
Descriptor:RIBONUCLEASE MC1, GUANOSINE-5'-MONOPHOSPHATE
Authors:Numata, T., Suzuki, A., Kakuta, Y., Kimura, K., Yao, M., Tanaka, I., Yoshida, Y., Ueda, T., Kimura, M.
Deposit date:2002-12-03
Release date:2003-05-20
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structures of the Ribonuclease MC1 Mutants N71T and N71S in Complex with 5'-GMP: Structural Basis for Alterations in Substrate Specificity
Biochemistry, 42, 2003
1J1G
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CRYSTAL STRUCTURE OF THE RNASE MC1 MUTANT N71S IN COMPLEX WITH 5'-GMP
Descriptor:Ribonuclease MC1, GUANOSINE-5'-MONOPHOSPHATE
Authors:Numata, T., Suzuki, A., Kakuta, Y., Kimura, K., Yao, M., Tanaka, I., Yoshida, Y., Ueda, T., Kimura, M.
Deposit date:2002-12-04
Release date:2003-05-20
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structures of the Ribonuclease MC1 Mutants N71T and N71S in Complex with 5'-GMP: Structural Basis for Alterations in Substrate Specificity
Biochemistry, 42, 2003
1J1W
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CRYSTAL STRUCTURE OF THE MONOMERIC ISOCITRATE DEHYDROGENASE IN COMPLEX WITH NADP+
Descriptor:Isocitrate Dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Yasutake, Y., Watanabe, S., Yao, M., Takada, Y., Fukunaga, N., Tanaka, I.
Deposit date:2002-12-19
Release date:2003-09-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal Structure of the Monomeric Isocitrate Dehydrogenase in the Presence of NADP+
J.Biol.Chem., 278, 2003
1J0D
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ACC DEAMINASE MUTANT COMPLEXED WITH ACC
Descriptor:1-aminocyclopropane-1-carboxylate deaminase, N-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-Y-LMETHYL]-1-AMINO-CYCLOPROPANECARBOXYLIC ACID
Authors:Ose, T., Fujino, A., Yao, M., Honma, M., Tanaka, I.
Deposit date:2002-11-12
Release date:2003-05-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Reaction intermediate structures of 1-aminocyclopropane-1-carboxylate deaminase: insight into PLP-dependent cyclopropane ring-opening reaction
J.BIOL.CHEM., 278, 2003
1J0E
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ACC DEAMINASE MUTANT REACTON INTERMEDIATE
Descriptor:1-aminocyclopropane-1-carboxylate deaminase, PYRIDOXAL-5'-PHOSPHATE, 1-AMINOCYCLOPROPANECARBOXYLIC ACID
Authors:Ose, T., Fujino, A., Yao, M., Honma, M., Tanaka, I.
Deposit date:2002-11-12
Release date:2003-05-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Reaction intermediate structures of 1-aminocyclopropane-1-carboxylate deaminase: insight into PLP-dependent cyclopropane ring-opening reaction
J.BIOL.CHEM., 278, 2003
1UCG
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CRYSTAL STRUCTURE OF RIBONUCLEASE MC1 N71T MUTANT
Descriptor:Ribonuclease MC, MANGANESE (II) ION
Authors:Suzuki, A., Numata, T., Yao, M., Tanaka, I., Kimura, M.
Deposit date:2003-04-14
Release date:2003-04-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structures of the ribonuclease MC1 mutants N71T and N71S in complex with 5'-GMP: structural basis for alterations in substrate specificity
Biochemistry, 42, 2003
3A8E
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THE STRUCTURE OF AXCESD OCTAMER COMPLEXED WITH CELLOPENTAOSE
Descriptor:Cellulose synthase operon protein D, CELLOPENTAOSE
Authors:Hu, S.Q., Tajima, K., Zhou, Y., Yao, M., Tanaka, I.
Deposit date:2009-10-05
Release date:2010-09-22
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of bacterial cellulose synthase subunit D octamer with four inner passageways
Proc.Natl.Acad.Sci.USA, 107, 2010
3AJ1
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THE STRUCTURE OF AXCESD OCTAMER (N-TERMINAL HIS-TAG) FROM ACETOBACTER XYLINUM
Descriptor:Cellulose synthase operon protein D
Authors:Hu, S.Q., Tajima, K., Zhou, Y., Tanaka, I., Yao, M.
Deposit date:2010-05-20
Release date:2010-10-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of bacterial cellulose synthase subunit D octamer with four inner passageways
Proc.Natl.Acad.Sci.USA, 107, 2010
3AJ2
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THE STRUCTURE OF AXCESD OCTAMER (C-TERMINAL HIS-TAG) FROM ACETOBACTER XYLINUM
Descriptor:Cellulose synthase operon protein D
Authors:Hu, S.Q., Tajima, K., Zhou, Y., Tanaka, I., Yao, M.
Deposit date:2010-05-20
Release date:2010-10-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of bacterial cellulose synthase subunit D octamer with four inner passageways
Proc.Natl.Acad.Sci.USA, 107, 2010
1EL1
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X-RAY CRYSTAL STRUCTURE ANALYSIS OF CANINE MILK LYSOZYME (HOLO-TYPE)
Descriptor:LYSOZYME C, CALCIUM ION
Authors:Koshiba, T., Yao, M., Tanaka, I., Nitta, K.
Deposit date:2000-03-13
Release date:2001-03-13
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Calcium Induced Conformational Changes of Canine Milk Lysozyme Revealed by Structural and Thermodynamical Evidences
To be Published
1ITW
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CRYSTAL STRUCTURE OF THE MONOMERIC ISOCITRATE DEHYDROGENASE IN COMPLEX WITH ISOCITRATE AND MN
Descriptor:Isocitrate dehydrogenase, MANGANESE (II) ION, ISOCITRIC ACID
Authors:Yasutake, Y., Watanabe, S., Yao, M., Takada, Y., Fukunaga, N., Tanaka, I.
Deposit date:2002-02-12
Release date:2002-12-11
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure of the Monomeric Isocitrate Dehydrogenase: Evidence of a Protein Monomerization by a Domain Duplication
Structure, 10, 2002
1GD6
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STRUCTURE OF THE BOMBYX MORI LYSOZYME
Descriptor:LYSOZYME
Authors:Matsuura, A., Aizawa, T., Yao, M., Kawano, K., Tanaka, I., Nitta, K.
Deposit date:2000-09-19
Release date:2001-03-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural analysis of an insect lysozyme exhibiting catalytic efficiency at low temperatures.
Biochemistry, 41, 2002
1ION
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THE SEPTUM SITE-DETERMINING PROTEIN MIND COMPLEXED WITH MG-ADP FROM PYROCOCCUS HORIKOSHII OT3
Descriptor:PROBABLE CELL DIVISION INHIBITOR MIND, MAGNESIUM ION, ADENOSINE-5'-DIPHOSPHATE
Authors:Sakai, N., Yao, M., Itou, H., Watanabe, N., Yumoto, F., Tanokura, M., Tanaka, I.
Deposit date:2001-03-21
Release date:2001-09-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The three-dimensional structure of septum site-determining protein MinD from Pyrococcus horikoshii OT3 in complex with Mg-ADP.
Structure, 9, 2001
1IQ4
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5S-RRNA BINDING RIBOSOMAL PROTEIN L5 FROM BACILLUS STEAROTHERMOPHILUS
Descriptor:50S RIBOSOMAL PROTEIN L5
Authors:Nakashima, T., Yao, M., Kawamura, S., Iwasaki, K., Kimura, M., Tanaka, I.
Deposit date:2001-06-13
Release date:2001-06-27
Last modified:2018-11-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Ribosomal protein L5 has a highly twisted concave surface and flexible arms responsible for rRNA binding.
RNA, 7, 2001
1IQV
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CRYSTAL STRUCTURE ANALYSIS OF THE ARCHAEBACTERIAL RIBOSOMAL PROTEIN S7
Descriptor:RIBOSOMAL PROTEIN S7
Authors:Hosaka, H., Yao, M., Kimura, M., Tanaka, I.
Deposit date:2001-08-07
Release date:2001-08-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The structure of the archaebacterial ribosomal protein S7 and its possible interaction with 16S rRNA.
J.Biochem.(Tokyo), 130, 2001
1IU8
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THE X-RAY CRYSTAL STRUCTURE OF PYRROLIDONE-CARBOXYLATE PEPTIDASE FROM HYPERTHERMOPHILIC ARCHAEON PYROCOCCUS HORIKOSHII
Descriptor:Pyrrolidone-carboxylate peptidase
Authors:Sokabe, M., Kawamura, T., Sakai, N., Yao, M., Watanabe, N., Tanaka, I.
Deposit date:2002-02-28
Release date:2002-03-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The X-ray crystal structure of pyrrolidone-carboxylate peptidase from hyperthermophilic archaea Pyrococcus horikoshii
J.STRUCT.FUNCT.GENOM., 2, 2002
1IZC
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CRYSTAL STRUCTURE ANALYSIS OF MACROPHOMATE SYNTHASE
Descriptor:macrophomate synthase intermolecular Diels-Alderase, MAGNESIUM ION, PYRUVIC ACID
Authors:Ose, T., Watanabe, K., Mie, T., Honma, M., Watanabe, H., Yao, M., Oikawa, H., Tanaka, I.
Deposit date:2002-10-01
Release date:2003-04-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Insight into a natural Diels-Alder reaction from the structure of macrophomate synthase.
Nature, 422, 2003
1J0A
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CRYSTAL STRUCTURE ANALYSIS OF THE ACC DEAMINASE HOMOLOGUE
Descriptor:1-aminocyclopropane-1-carboxylate deaminase, SULFATE ION, PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Fujino, A., Ose, T., Honma, M., Yao, M., Tanaka, I.
Deposit date:2002-11-12
Release date:2003-05-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural and enzymatic properties of 1-aminocyclopropane-1-carboxylate deaminase homologue from Pyrococcus horikoshii
J.Mol.Biol., 341, 2004
1J0B
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CRYSTAL STRUCTURE ANALYSIS OF THE ACC DEAMINASE HOMOLOGUE COMPLEXED WITH INHIBITOR
Descriptor:1-aminocyclopropane-1-carboxylate deaminase, N-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-Y-LMETHYL]-1-AMINO-CYCLOPROPANECARBOXYLIC ACID
Authors:Fujino, A., Ose, T., Honma, M., Yao, M., Tanaka, I.
Deposit date:2002-11-12
Release date:2003-05-12
Last modified:2014-08-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural and enzymatic properties of 1-aminocyclopropane-1-carboxylate deaminase homologue from Pyrococcus horikoshii
J.Mol.Biol., 341, 2004