Author results

5ZWP
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CRYSTAL STRUCTURE OF THE DELTA-CLASS GLUTATHIONE TRANSFERASE FROM MUSCA DOMESTICA
分子名称:Glutathione S-transferase 1, GLUTATHIONE, FORMIC ACID
著者Sue, M., Yajima, S.
登録日2018-05-16
公開日2018-06-13
最終更新日2018-06-20
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Crystal structure of the delta-class glutathione transferase in Musca domestica
Biochem. Biophys. Res. Commun., 502, 2018
3W0O
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CRYSTAL STRUCTURE OF A THERMOSTABLE MUTANT OF AMINOGLYCOSIDE PHOSPHOTRANSFERASE APH(4)-IA, TERNARY COMPLEX WITH ADP AND HYGROMYCIN B
分子名称:Hygromycin-B 4-O-kinase, ADENOSINE-5'-DIPHOSPHATE, HYGROMYCIN B VARIANT
著者Iino, D., Takakura, Y., Fukano, K., Sasaki, Y., Hoshino, T., Ohsawa, K., Nakamura, A., Yajima, S.
登録日2012-11-02
公開日2013-08-07
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal structures of the ternary complex of APH(4)-Ia/Hph with hygromycin B and an ATP analog using a thermostable mutant.
J.Struct.Biol., 183, 2013
5H6T
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CRYSTAL STRUCTURE OF HYDRAZIDASE FROM MICROBACTERIUM SP. STRAIN HM58-2
分子名称:Amidase
著者Akiyama, T., Ishii, M., Takuwa, A., Oinuma, K., Sasaki, Y., Takaya, N., Yajima, S.
登録日2016-11-15
公開日2017-03-15
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural basis of the substrate recognition of hydrazidase isolated from Microbacterium sp. strain HM58-2, which catalyzes acylhydrazide compounds as its sole carbon source
Biochem. Biophys. Res. Commun., 482, 2017
5YAB
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CRYSTAL STRUCTURE OF SCYLLO-INOSITOL DEHYDROGENASE WITH L-GLUCOSE DEHYDROGENASE ACTIVITY
分子名称:Scyllo-inositol dehydrogenase with L-glucose dehydrogenase activity, ACETATE ION
著者Fukano, K., Shimizu, T., Sasaki, Y., Nakamura, A., Yajima, S.
登録日2017-08-31
公開日2018-05-23
最終更新日2018-06-13
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Structural basis of L-glucose oxidation by scyllo-inositol dehydrogenase: Implications for a novel enzyme subfamily classification
PLoS ONE, 13, 2018
3W0S
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CRYSTAL STRUCTURE OF AMINOGLYCOSIDE PHOSPHOTRANSFERASE APH(4)-IA, TERNARY COMPLEX WITH AMP-PNP AND HYGROMYCIN B
分子名称:Hygromycin-B 4-O-kinase, HYGROMYCIN B VARIANT, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
著者Iino, D., Takakura, Y., Fukano, K., Sasaki, Y., Hoshino, T., Ohsawa, K., Nakamura, A., Yajima, S.
登録日2012-11-02
公開日2013-08-07
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献Crystal structures of the ternary complex of APH(4)-Ia/Hph with hygromycin B and an ATP analog using a thermostable mutant.
J.Struct.Biol., 183, 2013
2DGA
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CRYSTAL STRUCTURE OF HEXAMERIC BETA-GLUCOSIDASE IN WHEAT
分子名称:Beta-glucosidase, SULFATE ION, GLYCEROL
著者Sue, M., Yamazaki, K., Miyamoto, T., Yajima, S.
登録日2006-03-10
公開日2006-07-04
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Molecular and Structural Characterization of Hexameric beta-D-Glucosidases in Wheat and Rye.
Plant Physiol., 141, 2006
3VWX
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STRUCTURAL ANALYSIS OF AN EPSILON-CLASS GLUTATHIONE S-TRANSFERASE FROM HOUSEFLY, MUSCA DOMESTICA
分子名称:Glutathione s-transferase 6B, GLUTATHIONE
著者Nakamura, C., Sue, M., Miyamoto, T., Yajima, S.
登録日2012-09-05
公開日2013-02-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural analysis of an epsilon-class glutathione transferase from housefly, Musca domestica
Biochem.Biophys.Res.Commun., 430, 2013
3W0Q
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CRYSTAL STRUCTURE OF A THERMOSTABLE MUTANT OF AMINOGLYCOSIDE PHOSPHOTRANSFERASE APH(4)-IA (N203A), TERNARY COMPLEX WITH AMP-PNP AND HYGROMYCIN B
分子名称:Hygromycin-B 4-O-kinase, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, HYGROMYCIN B VARIANT
著者Iino, D., Takakura, Y., Fukano, K., Sasaki, Y., Hoshino, T., Ohsawa, K., Nakamura, A., Yajima, S.
登録日2012-11-02
公開日2013-08-07
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structures of the ternary complex of APH(4)-Ia/Hph with hygromycin B and an ATP analog using a thermostable mutant.
J.Struct.Biol., 183, 2013
5H6S
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CRYSTAL STRUCTURE OF HYDRAZIDASE S179A MUTANT COMPLEXED WITH A SUBSTRATE
分子名称:Amidase, 4-oxidanylbenzohydrazide
著者Akiyama, T., Ishii, M., Takuwa, A., Oinuma, K., Sasaki, Y., Takaya, N., Yajima, S.
登録日2016-11-15
公開日2017-02-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis of the substrate recognition of hydrazidase isolated from Microbacterium sp. strain HM58-2, which catalyzes acylhydrazide compounds as its sole carbon source
Biochem. Biophys. Res. Commun., 482, 2017
5YAP
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CRYSTAL STRUCTURE OF SCYLLO-INOSITOL DEHYDROGENASE WITH L-GLUCOSE DEHYDROGENASE ACTIVITY COMPLEXED WITH L-GLUCONO-1,5-LACTONE
分子名称:Scyllo-inositol dehydrogenase with L-glucose dehydrogenase activity, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, (3~{S},4~{R},5~{R},6~{S})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-one
著者Fukano, K., Shimizu, T., Sasaki, Y., Nakamura, A., Yajima, S.
登録日2017-09-01
公開日2018-05-23
最終更新日2018-06-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis of L-glucose oxidation by scyllo-inositol dehydrogenase: Implications for a novel enzyme subfamily classification
PLoS ONE, 13, 2018
5ZNM
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COLICIN D CENTRAL DOMAIN AND C-TERMINAL TRNASE DOMAIN
分子名称:Colicin-D, SULFATE ION, GLYCEROL
著者Chang, J.W., Sato, Y., Ogawa, T., Arakawa, T., Fukai, S., Fushinobu, S., Masaki, H.
登録日2018-04-10
公開日2018-08-29
最終更新日2018-10-31
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal structure of the central and the C-terminal RNase domains of colicin D implicated its translocation pathway through inner membrane of target cell
J. Biochem., 164, 2018
2DFX
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CRYSTAL STRUCTURE OF THE CARBOXY TERMINAL DOMAIN OF COLICIN E5 COMPLEXED WITH ITS INHIBITOR
分子名称:Colicin-E5, Colicin-E5 immunity protein
著者Yajima, S., Inoue, S., Ogawa, T., Nonaka, T., Ohsawa, K., Masaki, H.
登録日2006-03-06
公開日2007-01-23
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural basis for sequence-dependent recognition of colicin E5 tRNase by mimicking the mRNA-tRNA interaction
Nucleic Acids Res., 34, 2006
2DJH
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CRYSTAL STRUCTURE OF THE CARBOXY-TERMINAL RIBONUCLEASE DOMAIN OF COLICIN E5
分子名称:Colicin-E5, 2-AMINO-9-(2-DEOXY-3-O-PHOSPHONOPENTOFURANOSYL)-1,9-DIHYDRO-6H-PURIN-6-ONE, 2'-DEOXYURIDINE 3'-MONOPHOSPHATE
著者Yajima, S., Inoue, S., Ogawa, T., Nonaka, T., Ohsawa, K., Masaki, H.
登録日2006-04-03
公開日2007-01-23
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural basis for sequence-dependent recognition of colicin E5 tRNase by mimicking the mRNA-tRNA interaction
Nucleic Acids Res., 34, 2006
3AIQ
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CRYSTAL STRUCTURE OF BETA-GLUCOSIDASE IN WHEAT COMPLEXED WITH AN AGLYCONE DIMBOA
分子名称:Beta-glucosidase, 2,4-DIHYDROXY-7-(METHYLOXY)-2H-1,4-BENZOXAZIN-3(4H)-ONE
著者Sue, M., Nakamura, C., Miyamoto, T., Yajima, S.
登録日2010-05-18
公開日2011-02-23
最終更新日2012-04-04
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Active-site architecture of benzoxazinone-glucoside beta-D-glucosidases in Triticeae
Plant Sci., 180, 2011
3W0M
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CRYSTAL STRUCTURE OF A THERMOSTABLE MUTANT OF AMINOGLYCOSIDE PHOSPHOTRANSFERASE APH(4)-IA, APO FORM
分子名称:Hygromycin-B 4-O-kinase, (4S)-2-METHYL-2,4-PENTANEDIOL
著者Iino, D., Takakura, Y., Fukano, K., Sasaki, Y., Hoshino, T., Ohsawa, K., Nakamura, A., Yajima, S.
登録日2012-11-02
公開日2013-08-07
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structures of the ternary complex of APH(4)-Ia/Hph with hygromycin B and an ATP analog using a thermostable mutant.
J.Struct.Biol., 183, 2013
3W0N
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CRYSTAL STRUCTURE OF A THERMOSTABLE MUTANT OF AMINOGLYCOSIDE PHOSPHOTRANSFERASE APH(4)-IA, TERNARY COMPLEX WITH AMP-PNP AND HYGROMYCIN B
分子名称:Hygromycin-B 4-O-kinase, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, HYGROMYCIN B VARIANT
著者Iino, D., Takakura, Y., Fukano, K., Sasaki, Y., Hoshino, T., Ohsawa, K., Nakamura, A., Yajima, S.
登録日2012-11-02
公開日2013-08-07
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structures of the ternary complex of APH(4)-Ia/Hph with hygromycin B and an ATP analog using a thermostable mutant.
J.Struct.Biol., 183, 2013
5YAQ
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CRYSTAL STRUCTURE OF SCYLLO-INOSITOL DEHYDROGENASE WITH L-GLUCOSE DEHYDROGENASE ACTIVITY COMPLEXED WITH SCYLLO-INOSOSE
分子名称:Scyllo-inositol dehydrogenase with L-glucose dehydrogenase activity, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, (2R,3S,4s,5R,6S)-2,3,4,5,6-pentahydroxycyclohexanone
著者Fukano, K., Shimizu, T., Sasaki, Y., Nakamura, A., Yajima, S.
登録日2017-09-01
公開日2018-05-23
最終更新日2018-06-13
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献Structural basis of L-glucose oxidation by scyllo-inositol dehydrogenase: Implications for a novel enzyme subfamily classification
PLoS ONE, 13, 2018
3A06
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CRYSTAL STRUCTURE OF DXR FROM THERMOOGA MARITIA, IN COMPLEX WITH FOSMIDOMYCIN AND NADPH
分子名称:1-deoxy-D-xylulose 5-phosphate reductoisomerase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, 3-[FORMYL(HYDROXY)AMINO]PROPYLPHOSPHONIC ACID, ...
著者Takenoya, M., Ohtaki, A., Noguchi, K., Sasaki, Y., Ohsawa, K., Yohda, M., Yajima, S.
登録日2009-03-02
公開日2010-03-16
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of 1-deoxy-d-xylulose 5-phosphate reductoisomerase from the hyperthermophile Thermotoga maritima for insights into the coordination of conformational changes and an inhibitor binding
J.Struct.Biol., 170, 2010
3A14
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CRYSTAL STRUCTURE OF DXR FROM THERMOTOGA MARITIMA, IN COMPLEX WITH NADPH
分子名称:1-deoxy-D-xylulose 5-phosphate reductoisomerase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, MAGNESIUM ION, ...
著者Takenoya, M., Ohtaki, A., Noguchi, K., Sasaki, Y., Ohsawa, K., Yohda, M., Yajima, S.
登録日2009-03-25
公開日2010-04-07
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of 1-deoxy-d-xylulose 5-phosphate reductoisomerase from the hyperthermophile Thermotoga maritima for insights into the coordination of conformational changes and an inhibitor binding.
J.Struct.Biol., 2010
3AIR
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CRYSTAL STRUCTURE OF BETA-GLUCOSIDASE IN WHEAT COMPLEXED WITH 2-DEOXY-2-FLUOROGLUCOSIDE AND DINITROPHENOL
分子名称:Beta-glucosidase, 2-deoxy-2-fluoro-alpha-D-glucopyranose, 2,4-DINITROPHENOL
著者Sue, M., Nakamura, C., Miyamoto, T., Yajima, S.
登録日2010-05-18
公開日2011-03-16
最終更新日2012-04-04
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Active-site architecture of benzoxazinone-glucoside beta-D-glucosidases in Triticeae
Plant Sci., 180, 2011
3ANM
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CRYSTAL STRUCTURE OF 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE (DXR) COMPLEXED WITH 5-PHENYLPYRIDIN-2-YLMETHYLPHOSPHONIC ACID
分子名称:1-deoxy-D-xylulose 5-phosphate reductoisomerase, [(5-phenylpyridin-2-yl)methyl]phosphonic acid, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Endo, K., Kato, M., Deng, L., Song, Y., Yajima, S.
登録日2010-09-03
公開日2011-02-23
最終更新日2011-10-19
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structures of 1-Deoxy-D-Xylulose-5-Phosphate Reductoisomerase/Lipophilic Phosphonate Complexes
ACS Med Chem Lett, 2, 2011
3ANN
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CRYSTAL STRUCTURE OF 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE (DXR) COMPLEXED WITH QUINOLIN-2-YLMETHYLPHOSPHONIC ACID
分子名称:1-deoxy-D-xylulose 5-phosphate reductoisomerase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, (quinolin-2-ylmethyl)phosphonic acid
著者Endo, K., Kato, M., Deng, L., Song, Y., Yajima, S.
登録日2010-09-03
公開日2011-02-23
最終更新日2011-10-19
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structures of 1-Deoxy-D-Xylulose-5-Phosphate Reductoisomerase/Lipophilic Phosphonate Complexes
ACS Med Chem Lett, 2, 2011
3W0P
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CRYSTAL STRUCTURE OF A THERMOSTABLE MUTANT OF AMINOGLYCOSIDE PHOSPHOTRANSFERASE APH(4)-IA (D198A), TERNARY COMPLEX WITH ADP AND HYGROMYCIN B
分子名称:Hygromycin-B 4-O-kinase, ADENOSINE-5'-DIPHOSPHATE, HYGROMYCIN B VARIANT
著者Iino, D., Takakura, Y., Fukano, K., Sasaki, Y., Hoshino, T., Ohsawa, K., Nakamura, A., Yajima, S.
登録日2012-11-02
公開日2013-08-07
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structures of the ternary complex of APH(4)-Ia/Hph with hygromycin B and an ATP analog using a thermostable mutant.
J.Struct.Biol., 183, 2013
1TFK
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RIBONUCLEASE FROM ESCHERICHIA COLI COMPLEXED WITH ITS INHIBTOR PROTEIN
分子名称:Colicin D, Colicin D immunity protein, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
著者Yajima, S., Nakanishi, K., Takahashi, K., Ogawa, T., Kezuka, Y., Hidaka, M., Nonaka, T., Ohsawa, K., Masaki, H.
登録日2004-05-27
公開日2005-03-01
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Relation between tRNase activity and the structure of colicin D according to X-ray crystallography
Biochem.Biophys.Res.Commun., 322, 2004
3ANL
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CRYSTAL STRUCTURE OF 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE (DXR) COMPLEXED WITH PYRIDIN-2-YLMETHYLPHOSPHONIC ACID
分子名称:1-deoxy-D-xylulose 5-phosphate reductoisomerase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, (pyridin-2-ylmethyl)phosphonic acid
著者Endo, K., Kato, M., Deng, L., Song, Y., Yajima, S.
登録日2010-09-03
公開日2011-02-23
最終更新日2011-10-19
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structures of 1-Deoxy-D-Xylulose-5-Phosphate Reductoisomerase/Lipophilic Phosphonate Complexes
ACS Med Chem Lett, 2, 2011
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