Author results

6IY9
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CRYSTAL STRUCTURE OF AMINOGLYCOSIDE 7"-PHOSHOTRANSFERASE-IA (APH(7")-IA/HYG) FROM STREPTOMYCES HYGROSCOPICUS COMPLEXED WITH HYGROMYCIN B
分子名称:Hygromycin-B 7''-O-kinase, HYGROMYCIN B VARIANT, 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, ...
著者Takenoya, M., Shimamura, T., Yamanaka, R., Adachi, Y., Ito, S., Sasaki, Y., Nakamura, A., Yajima, S.
登録日2018-12-14
公開日2019-09-11
最終更新日2019-11-20
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural basis for the substrate recognition of aminoglycoside 7''-phosphotransferase-Ia from Streptomyces hygroscopicus.
Acta Crystallogr.,Sect.F, 75, 2019
6AA8
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CRYSTAL STRUCTURE OF (S)-3-HYDROXYBUTYRYL-COENZYMEA DEHYDROGENASE FROM CLOSTRIDIUM ACETOBUTYLICUM COMPLEXED WITH NAD+
分子名称:3-hydroxybutyryl-CoA dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Takenoya, M., Taguchi, S., Yajima, S.
登録日2018-07-17
公開日2018-11-07
最終更新日2018-11-21
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure and kinetic analyses of a hexameric form of (S)-3-hydroxybutyryl-CoA dehydrogenase from Clostridium acetobutylicum.
Acta Crystallogr F Struct Biol Commun, 74, 2018
6ACQ
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CRYSTAL STRUCTURE OF (S)-3-HYDROXYBUTYRYL-COA DEHYDROGENASE FROM CLOSTRIDIUM ACETOBUTYLICUM, APO FORM
分子名称:3-hydroxybutyryl-CoA dehydrogenase
著者Takenoya, M., Taguchi, S., Yajima, S.
登録日2018-07-27
公開日2018-11-07
最終更新日2018-11-21
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure and kinetic analyses of a hexameric form of (S)-3-hydroxybutyryl-CoA dehydrogenase from Clostridium acetobutylicum.
Acta Crystallogr F Struct Biol Commun, 74, 2018
5ZNM
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COLICIN D CENTRAL DOMAIN AND C-TERMINAL TRNASE DOMAIN
分子名称:Colicin-D, SULFATE ION, GLYCEROL
著者Chang, J.W., Sato, Y., Ogawa, T., Arakawa, T., Fukai, S., Fushinobu, S., Masaki, H.
登録日2018-04-10
公開日2018-08-29
最終更新日2018-10-31
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal structure of the central and the C-terminal RNase domains of colicin D implicated its translocation pathway through inner membrane of target cell
J. Biochem., 164, 2018
5ZWP
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CRYSTAL STRUCTURE OF THE DELTA-CLASS GLUTATHIONE TRANSFERASE FROM MUSCA DOMESTICA
分子名称:Glutathione S-transferase 1, GLUTATHIONE, FORMIC ACID
著者Sue, M., Yajima, S.
登録日2018-05-16
公開日2018-06-13
最終更新日2018-06-20
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Crystal structure of the delta-class glutathione transferase in Musca domestica
Biochem. Biophys. Res. Commun., 502, 2018
5YA8
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CRYSTAL STRUCTURE OF SCYLLO-INOSITOL DEHYDROGENASE WITH L-GLUCOSE DEHYDROGENASE ACTIVITY COMPLEXED WITH MYO-INOSITOL
分子名称:Scyllo-inositol dehydrogenase with L-glucose dehydrogenase activity, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE
著者Fukano, K., Shimizu, T., Sasaki, Y., Nakamura, A., Yajima, S.
登録日2017-08-31
公開日2018-05-23
最終更新日2018-06-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural basis of L-glucose oxidation by scyllo-inositol dehydrogenase: Implications for a novel enzyme subfamily classification
PLoS ONE, 13, 2018
5YAB
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CRYSTAL STRUCTURE OF SCYLLO-INOSITOL DEHYDROGENASE WITH L-GLUCOSE DEHYDROGENASE ACTIVITY
分子名称:Scyllo-inositol dehydrogenase with L-glucose dehydrogenase activity, ACETATE ION
著者Fukano, K., Shimizu, T., Sasaki, Y., Nakamura, A., Yajima, S.
登録日2017-08-31
公開日2018-05-23
最終更新日2018-06-13
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Structural basis of L-glucose oxidation by scyllo-inositol dehydrogenase: Implications for a novel enzyme subfamily classification
PLoS ONE, 13, 2018
5YAP
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CRYSTAL STRUCTURE OF SCYLLO-INOSITOL DEHYDROGENASE WITH L-GLUCOSE DEHYDROGENASE ACTIVITY COMPLEXED WITH L-GLUCONO-1,5-LACTONE
分子名称:Scyllo-inositol dehydrogenase with L-glucose dehydrogenase activity, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, (3~{S},4~{R},5~{R},6~{S})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-one
著者Fukano, K., Shimizu, T., Sasaki, Y., Nakamura, A., Yajima, S.
登録日2017-09-01
公開日2018-05-23
最終更新日2018-06-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis of L-glucose oxidation by scyllo-inositol dehydrogenase: Implications for a novel enzyme subfamily classification
PLoS ONE, 13, 2018
5YAQ
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CRYSTAL STRUCTURE OF SCYLLO-INOSITOL DEHYDROGENASE WITH L-GLUCOSE DEHYDROGENASE ACTIVITY COMPLEXED WITH SCYLLO-INOSOSE
分子名称:Scyllo-inositol dehydrogenase with L-glucose dehydrogenase activity, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, (2R,3S,4s,5R,6S)-2,3,4,5,6-pentahydroxycyclohexanone
著者Fukano, K., Shimizu, T., Sasaki, Y., Nakamura, A., Yajima, S.
登録日2017-09-01
公開日2018-05-23
最終更新日2018-06-13
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献Structural basis of L-glucose oxidation by scyllo-inositol dehydrogenase: Implications for a novel enzyme subfamily classification
PLoS ONE, 13, 2018
5YGV
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CRYSTAL STRUCTURE OF THE ABSCISIC ACID RECEPTOR PYR1 IN COMPLEX WITH AN ANTAGONIST
分子名称:Abscisic acid receptor PYR1, (2Z,4E)-3-methyl-5-[(1S,4S)-2,6,6-trimethyl-4-[3-(4-methylphenyl)prop-2-ynoxy]-1-oxidanyl-cyclohex-2-en-1-yl]penta-2,4-dienoic acid
著者Akiyama, T., Sue, M., Takeuchi, J., Mimura, N., Okamoto, M., Monda, K., Iba, K., Ohnishi, T., Todoroki, Y., Yajima, S.
登録日2017-09-27
公開日2018-04-18
最終更新日2018-05-30
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structure-Based Chemical Design of Abscisic Acid Antagonists That Block PYL-PP2C Receptor Interactions.
ACS Chem. Biol., 13, 2018
5H6T
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CRYSTAL STRUCTURE OF HYDRAZIDASE FROM MICROBACTERIUM SP. STRAIN HM58-2
分子名称:Amidase
著者Akiyama, T., Ishii, M., Takuwa, A., Oinuma, K., Sasaki, Y., Takaya, N., Yajima, S.
登録日2016-11-15
公開日2017-03-15
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural basis of the substrate recognition of hydrazidase isolated from Microbacterium sp. strain HM58-2, which catalyzes acylhydrazide compounds as its sole carbon source
Biochem. Biophys. Res. Commun., 482, 2017
5H6S
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CRYSTAL STRUCTURE OF HYDRAZIDASE S179A MUTANT COMPLEXED WITH A SUBSTRATE
分子名称:Amidase, 4-oxidanylbenzohydrazide
著者Akiyama, T., Ishii, M., Takuwa, A., Oinuma, K., Sasaki, Y., Takaya, N., Yajima, S.
登録日2016-11-15
公開日2017-02-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis of the substrate recognition of hydrazidase isolated from Microbacterium sp. strain HM58-2, which catalyzes acylhydrazide compounds as its sole carbon source
Biochem. Biophys. Res. Commun., 482, 2017
5H1A
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CRYSTAL STRUCTURE OF AN ICLR HOMOLOG FROM MICROBACTERIUM SP. STRAIN HM58-2
分子名称:IclR transcription factor homolog, PHOSPHATE ION
著者Akiyama, T., Yamada, Y., Takaya, N., Ito, S., Sasaki, Y., Yajima, S.
登録日2016-10-08
公開日2017-01-18
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of an IclR homologue from Microbacterium sp. strain HM58-2.
Acta Crystallogr F Struct Biol Commun, 73, 2017
5B2H
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CRYSTAL STRUCTURE OF HA33 FROM CLOSTRIDIUM BOTULINUM SEROTYPE C STRAIN YOICHI
分子名称:HA-33, TRIETHYLENE GLYCOL
著者Akiyama, T., Hayashi, S., Matsumoto, T., Hasegawa, K., Yamano, A., Suzuki, T., Niwa, K., Watanabe, T., Sagane, Y., Yajima, S.
登録日2016-01-15
公開日2016-06-15
最終更新日2016-07-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Conformational divergence in the HA-33/HA-17 trimer of serotype C and D botulinum toxin complex
Biochem.Biophys.Res.Commun., 476, 2016
3WG8
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CRYSTAL STRUCTURE OF THE ABSCISIC ACID RECEPTOR PYR1 IN COMPLEX WITH AN ANTAGONIST AS6
分子名称:Abscisic acid receptor PYR1, (2Z,4E)-5-[(1S)-3-(hexylsulfanyl)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid
著者Akiyama, T., Sue, M., Takeuchi, J., Okamoto, M., Muto, T., Endo, A., Nambara, E., Hirai, N., Ohnishi, T., Cutler, S.R., Todoroki, Y., Yajima, S.
登録日2013-07-31
公開日2014-05-07
最終更新日2014-06-11
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Designed abscisic acid analogs as antagonists of PYL-PP2C receptor interactions
Nat.Chem.Biol., 10, 2014
3W0M
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CRYSTAL STRUCTURE OF A THERMOSTABLE MUTANT OF AMINOGLYCOSIDE PHOSPHOTRANSFERASE APH(4)-IA, APO FORM
分子名称:Hygromycin-B 4-O-kinase, (4S)-2-METHYL-2,4-PENTANEDIOL
著者Iino, D., Takakura, Y., Fukano, K., Sasaki, Y., Hoshino, T., Ohsawa, K., Nakamura, A., Yajima, S.
登録日2012-11-02
公開日2013-08-07
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structures of the ternary complex of APH(4)-Ia/Hph with hygromycin B and an ATP analog using a thermostable mutant.
J.Struct.Biol., 183, 2013
3W0N
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CRYSTAL STRUCTURE OF A THERMOSTABLE MUTANT OF AMINOGLYCOSIDE PHOSPHOTRANSFERASE APH(4)-IA, TERNARY COMPLEX WITH AMP-PNP AND HYGROMYCIN B
分子名称:Hygromycin-B 4-O-kinase, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, HYGROMYCIN B VARIANT
著者Iino, D., Takakura, Y., Fukano, K., Sasaki, Y., Hoshino, T., Ohsawa, K., Nakamura, A., Yajima, S.
登録日2012-11-02
公開日2013-08-07
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structures of the ternary complex of APH(4)-Ia/Hph with hygromycin B and an ATP analog using a thermostable mutant.
J.Struct.Biol., 183, 2013
3W0O
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CRYSTAL STRUCTURE OF A THERMOSTABLE MUTANT OF AMINOGLYCOSIDE PHOSPHOTRANSFERASE APH(4)-IA, TERNARY COMPLEX WITH ADP AND HYGROMYCIN B
分子名称:Hygromycin-B 4-O-kinase, ADENOSINE-5'-DIPHOSPHATE, HYGROMYCIN B VARIANT
著者Iino, D., Takakura, Y., Fukano, K., Sasaki, Y., Hoshino, T., Ohsawa, K., Nakamura, A., Yajima, S.
登録日2012-11-02
公開日2013-08-07
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal structures of the ternary complex of APH(4)-Ia/Hph with hygromycin B and an ATP analog using a thermostable mutant.
J.Struct.Biol., 183, 2013
3W0P
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CRYSTAL STRUCTURE OF A THERMOSTABLE MUTANT OF AMINOGLYCOSIDE PHOSPHOTRANSFERASE APH(4)-IA (D198A), TERNARY COMPLEX WITH ADP AND HYGROMYCIN B
分子名称:Hygromycin-B 4-O-kinase, ADENOSINE-5'-DIPHOSPHATE, HYGROMYCIN B VARIANT
著者Iino, D., Takakura, Y., Fukano, K., Sasaki, Y., Hoshino, T., Ohsawa, K., Nakamura, A., Yajima, S.
登録日2012-11-02
公開日2013-08-07
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structures of the ternary complex of APH(4)-Ia/Hph with hygromycin B and an ATP analog using a thermostable mutant.
J.Struct.Biol., 183, 2013
3W0Q
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CRYSTAL STRUCTURE OF A THERMOSTABLE MUTANT OF AMINOGLYCOSIDE PHOSPHOTRANSFERASE APH(4)-IA (N203A), TERNARY COMPLEX WITH AMP-PNP AND HYGROMYCIN B
分子名称:Hygromycin-B 4-O-kinase, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, HYGROMYCIN B VARIANT
著者Iino, D., Takakura, Y., Fukano, K., Sasaki, Y., Hoshino, T., Ohsawa, K., Nakamura, A., Yajima, S.
登録日2012-11-02
公開日2013-08-07
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structures of the ternary complex of APH(4)-Ia/Hph with hygromycin B and an ATP analog using a thermostable mutant.
J.Struct.Biol., 183, 2013
3W0R
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CRYSTAL STRUCTURE OF A THERMOSTABLE MUTANT OF AMINOGLYCOSIDE PHOSPHOTRANSFERASE APH(4)-IA (N202A), TERNARY COMPLEX WITH AMP-PNP AND HYGROMYCIN B
分子名称:Hygromycin-B 4-O-kinase, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, HYGROMYCIN B VARIANT
著者Iino, D., Takakura, Y., Fukano, K., Sasaki, Y., Hoshino, T., Ohsawa, K., Nakamura, A., Yajima, S.
登録日2012-11-02
公開日2013-08-07
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structures of the ternary complex of APH(4)-Ia/Hph with hygromycin B and an ATP analog using a thermostable mutant.
J.Struct.Biol., 183, 2013
3W0S
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CRYSTAL STRUCTURE OF AMINOGLYCOSIDE PHOSPHOTRANSFERASE APH(4)-IA, TERNARY COMPLEX WITH AMP-PNP AND HYGROMYCIN B
分子名称:Hygromycin-B 4-O-kinase, HYGROMYCIN B VARIANT, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
著者Iino, D., Takakura, Y., Fukano, K., Sasaki, Y., Hoshino, T., Ohsawa, K., Nakamura, A., Yajima, S.
登録日2012-11-02
公開日2013-08-07
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献Crystal structures of the ternary complex of APH(4)-Ia/Hph with hygromycin B and an ATP analog using a thermostable mutant.
J.Struct.Biol., 183, 2013
3VWX
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STRUCTURAL ANALYSIS OF AN EPSILON-CLASS GLUTATHIONE S-TRANSFERASE FROM HOUSEFLY, MUSCA DOMESTICA
分子名称:Glutathione s-transferase 6B, GLUTATHIONE
著者Nakamura, C., Sue, M., Miyamoto, T., Yajima, S.
登録日2012-09-05
公開日2013-02-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural analysis of an epsilon-class glutathione transferase from housefly, Musca domestica
Biochem.Biophys.Res.Commun., 430, 2013
3VUO
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CRYSTAL STRUCTURE OF NONTOXIC NONHEMAGGLUTININ SUBCOMPONENT (NTNHA) FROM CLOSTRIDIUM BOTULINUM SEROTYPE D STRAIN 4947
分子名称:NTNHA
著者Sagane, Y., Miyashita, S.-I., Miyata, K., Matsumoto, T., Inui, K., Hayashi, S., Suzuki, T., Hasegawa, K., Yajima, S., Yamano, A., Niwa, K., Watanabe, T.
登録日2012-07-03
公開日2012-09-19
実験手法X-RAY DIFFRACTION (3.9 Å)
主引用文献Small-angle X-ray scattering reveals structural dynamics of the botulinum neurotoxin associating protein, nontoxic nonhemagglutinin
Biochem.Biophys.Res.Commun., 425, 2012
3VJ7
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CRYSTAL STRUCTURE OF THE CARBOXY-TERMINAL RIBONUCLEASE DOMAIN OF COLICIN E5 R33Q MUTANT
分子名称:Colicin-E5, 2-AMINO-9-(2-DEOXY-3-O-PHOSPHONOPENTOFURANOSYL)-1,9-DIHYDRO-6H-PURIN-6-ONE, 2'-DEOXYURIDINE 3'-MONOPHOSPHATE
著者Yajima, S., Inoue, S., Fushinobu, S., Ogawa, T., Hidaka, M., Masaki, H.
登録日2011-10-13
公開日2011-11-02
最終更新日2013-02-06
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Identification of the catalytic residues of sequence-specific and histidine-free ribonuclease colicin E5
J.Biochem., 152, 2012
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