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2DFX
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CRYSTAL STRUCTURE OF THE CARBOXY TERMINAL DOMAIN OF COLICIN E5 COMPLEXED WITH ITS INHIBITOR
分子名称:Colicin-E5, Colicin-E5 immunity protein
著者Yajima, S., Inoue, S., Ogawa, T., Nonaka, T., Ohsawa, K., Masaki, H.
登録日2006-03-06
公開日2007-01-23
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural basis for sequence-dependent recognition of colicin E5 tRNase by mimicking the mRNA-tRNA interaction
Nucleic Acids Res., 34, 2006
2DJH
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CRYSTAL STRUCTURE OF THE CARBOXY-TERMINAL RIBONUCLEASE DOMAIN OF COLICIN E5
分子名称:Colicin-E5, 2-AMINO-9-(2-DEOXY-3-O-PHOSPHONOPENTOFURANOSYL)-1,9-DIHYDRO-6H-PURIN-6-ONE, 2'-DEOXYURIDINE 3'-MONOPHOSPHATE
著者Yajima, S., Inoue, S., Ogawa, T., Nonaka, T., Ohsawa, K., Masaki, H.
登録日2006-04-03
公開日2007-01-23
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural basis for sequence-dependent recognition of colicin E5 tRNase by mimicking the mRNA-tRNA interaction
Nucleic Acids Res., 34, 2006
1JVS
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CRYSTAL STRUCTURE OF 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE; A TARGET ENZYME FOR ANTIMALARIAL DRUGS
分子名称:1-deoxy-D-xylulose 5-phosphate reductoisomerase, SULFATE ION, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Yajima, S., Nonaka, T., Kuzuyama, T., Seto, H., Ohsawa, K.
登録日2001-08-31
公開日2002-10-09
最終更新日2017-10-04
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of 1-deoxy-D-xylulose 5-phosphate reductoisomerase complexed with cofactors: implications of a flexible loop movement upon substrate binding.
J.Biochem.(Tokyo), 131, 2002
1T1R
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CRYSTAL STRUCTURE OF THE REDUCTOISOMERASE COMPLEXED WITH A BISPHOSPHONATE
分子名称:1-deoxy-D-xylulose 5-phosphate reductoisomerase, SULFATE ION, [(ISOQUINOLIN-1-YLAMINO)-PHOSPHONO-METHYL]-PHOSPHONIC ACID
著者Yajima, S., Hara, K., Sanders, J.M., Yin, F., Ohsawa, K., Wiesner, J., Jomaa, H., Oldfield, E.
登録日2004-04-17
公開日2004-09-14
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystallographic Structures of Two Bisphosphonate:1-Deoxyxylulose-5-Phosphate Reductoisomerase Complexes
J.Am.Chem.Soc., 126, 2004
1T1S
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CRYSTAL STRUCTURE OF THE REDUCTOISOMERASE COMPLEXED WITH A BISPHOSPHONATE
分子名称:1-deoxy-D-xylulose 5-phosphate reductoisomerase, SULFATE ION, MAGNESIUM ION, ...
著者Yajima, S., Hara, K., Sanders, J.M., Yin, F., Ohsawa, K., Wiesner, J., Jomaa, H., Oldfield, E.
登録日2004-04-17
公開日2004-09-14
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystallographic Structures of Two Bisphosphonate:1-Deoxyxylulose-5-Phosphate Reductoisomerase Complexes
J.Am.Chem.Soc., 126, 2004
1TFK
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RIBONUCLEASE FROM ESCHERICHIA COLI COMPLEXED WITH ITS INHIBTOR PROTEIN
分子名称:Colicin D, Colicin D immunity protein, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
著者Yajima, S., Nakanishi, K., Takahashi, K., Ogawa, T., Kezuka, Y., Hidaka, M., Nonaka, T., Ohsawa, K., Masaki, H.
登録日2004-05-27
公開日2005-03-01
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Relation between tRNase activity and the structure of colicin D according to X-ray crystallography
Biochem.Biophys.Res.Commun., 322, 2004
1TFO
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RIBONUCLEASE FROM ESCHERICHIA COLI COMPLEXED WITH ITS INHIBITOR PROTEIN
分子名称:Colicin D, Colicin D immunity protein
著者Yajima, S., Nakanishi, K., Takahashi, K., Ogawa, T., Kezuka, Y., Hidaka, M., Nonaka, T., Ohsawa, K., Masaki, H.
登録日2004-05-27
公開日2005-03-01
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Relation between tRNase activity and the structure of colicin D according to X-ray crystallography
Biochem.Biophys.Res.Commun., 322, 2004
2EGH
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CRYSTAL STRUCTURE OF 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE COMPLEXED WITH A MAGNESIUM ION, NADPH AND FOSMIDOMYCIN
分子名称:1-deoxy-D-xylulose 5-phosphate reductoisomerase, MAGNESIUM ION, 3-[FORMYL(HYDROXY)AMINO]PROPYLPHOSPHONIC ACID, ...
著者Yajima, S., Hara, K., Iino, D., Sasaki, Y., Kuzuyama, T., Seto, H.
登録日2007-03-01
公開日2007-06-19
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structure of 1-deoxy-D-xylulose 5-phosphate reductoisomerase in a quaternary complex with a magnesium ion, NADPH and the antimalarial drug fosmidomycin
Acta Crystallogr.,Sect.F, 63, 2007
3VJ7
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CRYSTAL STRUCTURE OF THE CARBOXY-TERMINAL RIBONUCLEASE DOMAIN OF COLICIN E5 R33Q MUTANT
分子名称:Colicin-E5, 2-AMINO-9-(2-DEOXY-3-O-PHOSPHONOPENTOFURANOSYL)-1,9-DIHYDRO-6H-PURIN-6-ONE, 2'-DEOXYURIDINE 3'-MONOPHOSPHATE
著者Yajima, S., Inoue, S., Fushinobu, S., Ogawa, T., Hidaka, M., Masaki, H.
登録日2011-10-13
公開日2011-11-02
最終更新日2013-02-06
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Identification of the catalytic residues of sequence-specific and histidine-free ribonuclease colicin E5
J.Biochem., 152, 2012
2JLN
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STRUCTURE OF MHP1, A NUCLEOBASE-CATION-SYMPORT-1 FAMILY TRANSPORTER
分子名称:MHP1, SODIUM ION, MERCURY (II) ION
著者Weyand, S., Shimamura, T., Yajima, S., Suzuki, S., Mirza, O., Krusong, K., Carpenter, E.P., Rutherford, N.G., Hadden, J.M., O'Reilly, J., Ma, P., Saidijam, M., Patching, S.G., Hope, R.J., Norbertczak, H.T., Roach, P.C.J., Iwata, S., Henderson, P.J.F., Cameron, A.D.
登録日2008-09-11
公開日2008-10-28
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Structure and Molecular Mechanism of a Nucleobase-Cation-Symport-1 Family Transporter.
Science, 322, 2008
3AO9
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CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF SEQUENCE-SPECIFIC RIBONUCLEASE
分子名称:Colicin-E5, CADMIUM ION
著者Inoue, S., Fushinobu, S., Ogawa, T., Hidaka, M., Masaki, H., Yajima, S.
登録日2010-09-22
公開日2011-09-28
最終更新日2019-01-23
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Identification of the catalytic residues of sequence-specific and histidine-free ribonuclease colicin E5
J.Biochem., 152, 2012
3VUO
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CRYSTAL STRUCTURE OF NONTOXIC NONHEMAGGLUTININ SUBCOMPONENT (NTNHA) FROM CLOSTRIDIUM BOTULINUM SEROTYPE D STRAIN 4947
分子名称:NTNHA
著者Sagane, Y., Miyashita, S.-I., Miyata, K., Matsumoto, T., Inui, K., Hayashi, S., Suzuki, T., Hasegawa, K., Yajima, S., Yamano, A., Niwa, K., Watanabe, T.
登録日2012-07-03
公開日2012-09-19
実験手法X-RAY DIFFRACTION (3.9 Å)
主引用文献Small-angle X-ray scattering reveals structural dynamics of the botulinum neurotoxin associating protein, nontoxic nonhemagglutinin
Biochem.Biophys.Res.Commun., 425, 2012
5B2H
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CRYSTAL STRUCTURE OF HA33 FROM CLOSTRIDIUM BOTULINUM SEROTYPE C STRAIN YOICHI
分子名称:HA-33, TRIETHYLENE GLYCOL
著者Akiyama, T., Hayashi, S., Matsumoto, T., Hasegawa, K., Yamano, A., Suzuki, T., Niwa, K., Watanabe, T., Sagane, Y., Yajima, S.
登録日2016-01-15
公開日2016-06-15
最終更新日2016-07-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Conformational divergence in the HA-33/HA-17 trimer of serotype C and D botulinum toxin complex
Biochem.Biophys.Res.Commun., 476, 2016
5H1A
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CRYSTAL STRUCTURE OF AN ICLR HOMOLOG FROM MICROBACTERIUM SP. STRAIN HM58-2
分子名称:IclR transcription factor homolog, PHOSPHATE ION
著者Akiyama, T., Yamada, Y., Takaya, N., Ito, S., Sasaki, Y., Yajima, S.
登録日2016-10-08
公開日2017-01-18
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of an IclR homologue from Microbacterium sp. strain HM58-2.
Acta Crystallogr F Struct Biol Commun, 73, 2017
5YA8
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CRYSTAL STRUCTURE OF SCYLLO-INOSITOL DEHYDROGENASE WITH L-GLUCOSE DEHYDROGENASE ACTIVITY COMPLEXED WITH MYO-INOSITOL
分子名称:Scyllo-inositol dehydrogenase with L-glucose dehydrogenase activity, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE
著者Fukano, K., Shimizu, T., Sasaki, Y., Nakamura, A., Yajima, S.
登録日2017-08-31
公開日2018-05-23
最終更新日2018-06-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural basis of L-glucose oxidation by scyllo-inositol dehydrogenase: Implications for a novel enzyme subfamily classification
PLoS ONE, 13, 2018
5YAB
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CRYSTAL STRUCTURE OF SCYLLO-INOSITOL DEHYDROGENASE WITH L-GLUCOSE DEHYDROGENASE ACTIVITY
分子名称:Scyllo-inositol dehydrogenase with L-glucose dehydrogenase activity, ACETATE ION
著者Fukano, K., Shimizu, T., Sasaki, Y., Nakamura, A., Yajima, S.
登録日2017-08-31
公開日2018-05-23
最終更新日2018-06-13
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Structural basis of L-glucose oxidation by scyllo-inositol dehydrogenase: Implications for a novel enzyme subfamily classification
PLoS ONE, 13, 2018
5YAP
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CRYSTAL STRUCTURE OF SCYLLO-INOSITOL DEHYDROGENASE WITH L-GLUCOSE DEHYDROGENASE ACTIVITY COMPLEXED WITH L-GLUCONO-1,5-LACTONE
分子名称:Scyllo-inositol dehydrogenase with L-glucose dehydrogenase activity, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, (3~{S},4~{R},5~{R},6~{S})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-one
著者Fukano, K., Shimizu, T., Sasaki, Y., Nakamura, A., Yajima, S.
登録日2017-09-01
公開日2018-05-23
最終更新日2018-06-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis of L-glucose oxidation by scyllo-inositol dehydrogenase: Implications for a novel enzyme subfamily classification
PLoS ONE, 13, 2018
5YAQ
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CRYSTAL STRUCTURE OF SCYLLO-INOSITOL DEHYDROGENASE WITH L-GLUCOSE DEHYDROGENASE ACTIVITY COMPLEXED WITH SCYLLO-INOSOSE
分子名称:Scyllo-inositol dehydrogenase with L-glucose dehydrogenase activity, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, (2R,3S,4s,5R,6S)-2,3,4,5,6-pentahydroxycyclohexanone
著者Fukano, K., Shimizu, T., Sasaki, Y., Nakamura, A., Yajima, S.
登録日2017-09-01
公開日2018-05-23
最終更新日2018-06-13
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献Structural basis of L-glucose oxidation by scyllo-inositol dehydrogenase: Implications for a novel enzyme subfamily classification
PLoS ONE, 13, 2018
6AA8
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CRYSTAL STRUCTURE OF (S)-3-HYDROXYBUTYRYL-COENZYMEA DEHYDROGENASE FROM CLOSTRIDIUM ACETOBUTYLICUM COMPLEXED WITH NAD+
分子名称:3-hydroxybutyryl-CoA dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Takenoya, M., Taguchi, S., Yajima, S.
登録日2018-07-17
公開日2018-11-07
最終更新日2018-11-21
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure and kinetic analyses of a hexameric form of (S)-3-hydroxybutyryl-CoA dehydrogenase from Clostridium acetobutylicum.
Acta Crystallogr F Struct Biol Commun, 74, 2018
6ACQ
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CRYSTAL STRUCTURE OF (S)-3-HYDROXYBUTYRYL-COA DEHYDROGENASE FROM CLOSTRIDIUM ACETOBUTYLICUM, APO FORM
分子名称:3-hydroxybutyryl-CoA dehydrogenase
著者Takenoya, M., Taguchi, S., Yajima, S.
登録日2018-07-27
公開日2018-11-07
最終更新日2018-11-21
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure and kinetic analyses of a hexameric form of (S)-3-hydroxybutyryl-CoA dehydrogenase from Clostridium acetobutylicum.
Acta Crystallogr F Struct Biol Commun, 74, 2018
2DGA
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CRYSTAL STRUCTURE OF HEXAMERIC BETA-GLUCOSIDASE IN WHEAT
分子名称:Beta-glucosidase, SULFATE ION, GLYCEROL
著者Sue, M., Yamazaki, K., Miyamoto, T., Yajima, S.
登録日2006-03-10
公開日2006-07-04
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Molecular and Structural Characterization of Hexameric beta-D-Glucosidases in Wheat and Rye.
Plant Physiol., 141, 2006
3A06
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CRYSTAL STRUCTURE OF DXR FROM THERMOOGA MARITIA, IN COMPLEX WITH FOSMIDOMYCIN AND NADPH
分子名称:1-deoxy-D-xylulose 5-phosphate reductoisomerase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, 3-[FORMYL(HYDROXY)AMINO]PROPYLPHOSPHONIC ACID, ...
著者Takenoya, M., Ohtaki, A., Noguchi, K., Sasaki, Y., Ohsawa, K., Yohda, M., Yajima, S.
登録日2009-03-02
公開日2010-03-16
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of 1-deoxy-d-xylulose 5-phosphate reductoisomerase from the hyperthermophile Thermotoga maritima for insights into the coordination of conformational changes and an inhibitor binding
J.Struct.Biol., 170, 2010
3A14
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CRYSTAL STRUCTURE OF DXR FROM THERMOTOGA MARITIMA, IN COMPLEX WITH NADPH
分子名称:1-deoxy-D-xylulose 5-phosphate reductoisomerase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, MAGNESIUM ION, ...
著者Takenoya, M., Ohtaki, A., Noguchi, K., Sasaki, Y., Ohsawa, K., Yohda, M., Yajima, S.
登録日2009-03-25
公開日2010-04-07
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of 1-deoxy-d-xylulose 5-phosphate reductoisomerase from the hyperthermophile Thermotoga maritima for insights into the coordination of conformational changes and an inhibitor binding.
J.Struct.Biol., 2010
3AIQ
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CRYSTAL STRUCTURE OF BETA-GLUCOSIDASE IN WHEAT COMPLEXED WITH AN AGLYCONE DIMBOA
分子名称:Beta-glucosidase, 2,4-DIHYDROXY-7-(METHYLOXY)-2H-1,4-BENZOXAZIN-3(4H)-ONE
著者Sue, M., Nakamura, C., Miyamoto, T., Yajima, S.
登録日2010-05-18
公開日2011-02-23
最終更新日2012-04-04
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Active-site architecture of benzoxazinone-glucoside beta-D-glucosidases in Triticeae
Plant Sci., 180, 2011
3AIR
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CRYSTAL STRUCTURE OF BETA-GLUCOSIDASE IN WHEAT COMPLEXED WITH 2-DEOXY-2-FLUOROGLUCOSIDE AND DINITROPHENOL
分子名称:Beta-glucosidase, 2-deoxy-2-fluoro-alpha-D-glucopyranose, 2,4-DINITROPHENOL
著者Sue, M., Nakamura, C., Miyamoto, T., Yajima, S.
登録日2010-05-18
公開日2011-03-16
最終更新日2012-04-04
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Active-site architecture of benzoxazinone-glucoside beta-D-glucosidases in Triticeae
Plant Sci., 180, 2011
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