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4G3K
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BU of 4g3k by Molmil
Crystal structure of a. aeolicus nlh1 gaf domain in an inactive state
Descriptor: Transcriptional regulator nlh1
Authors:Wemmer, D.E, Batchelor, J.D, Wang, A, Lee, P, Doucleff, M.
Deposit date:2012-07-14
Release date:2013-05-29
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Structural mechanism of GAF-regulated delta(54) activators from Aquifex aeolicus
J.Mol.Biol., 425, 2013
108D
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BU of 108d by Molmil
THE SOLUTION STRUCTURE OF A DNA COMPLEX WITH THE FLUORESCENT BIS INTERCALATOR TOTO DETERMINED BY NMR SPECTROSCOPY
Descriptor: 1,1-(4,4,8,8-TETRAMETHYL-4,8-DIAZAUNDECAMETHYLENE)-BIS-4-3-METHYL-2,3-DIHYDRO-(BENZO-1,3-THIAZOLE)-2-METHYLIDENE)-QUINOLINIUM, DNA (5'-D(*CP*GP*CP*TP*AP*GP*CP*G)-3')
Authors:Spielmann, H.P, Wemmer, D.E, Jacobsen, J.P.
Deposit date:1995-01-31
Release date:1995-06-03
Last modified:2024-03-13
Method:SOLUTION NMR
Cite:Solution structure of a DNA complex with the fluorescent bis-intercalator TOTO determined by NMR spectroscopy.
Biochemistry, 34, 1995
1BBI
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BU of 1bbi by Molmil
THREE-DIMENSIONAL STRUCTURE OF SOYBEAN TRYPSIN(SLASH)CHYMOTRYPSIN BOWMAN-BIRK INHIBITOR IN SOLUTION
Descriptor: TRYPSIN/CHYMOTRYPSIN BOWMAN-BIRK INHIBITOR
Authors:Werner, M.H, Wemmer, D.E.
Deposit date:1991-09-19
Release date:1993-10-31
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:Three-dimensional structure of soybean trypsin/chymotrypsin Bowman-Birk inhibitor in solution.
Biochemistry, 31, 1992
3HSF
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BU of 3hsf by Molmil
HEAT SHOCK TRANSCRIPTION FACTOR (HSF)
Descriptor: HEAT SHOCK TRANSCRIPTION FACTOR
Authors:Damberger, F.F, Pelton, J.G, Liu, C, Cho, H, Harrison, C.J, Nelson, H.C.M, Wemmer, D.E.
Deposit date:1995-08-07
Release date:1995-11-14
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Refined solution structure and dynamics of the DNA-binding domain of the heat shock factor from Kluyveromyces lactis.
J.Mol.Biol., 254, 1995
1ZDM
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BU of 1zdm by Molmil
Crystal Structure of Activated CheY Bound to Xe
Descriptor: Chemotaxis protein cheY, MANGANESE (II) ION, XENON
Authors:Lowery, T.J, Doucleff, M, Ruiz, E.J, Rubin, S.M, Pines, A, Wemmer, D.E.
Deposit date:2005-04-14
Release date:2005-04-26
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Distinguishing multiple chemotaxis Y protein conformations with laser-polarized 129Xe NMR.
Protein Sci., 14, 2005
3GT8
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BU of 3gt8 by Molmil
Crystal structure of the inactive EGFR kinase domain in complex with AMP-PNP
Descriptor: Epidermal growth factor receptor, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Jura, N, Endres, N.F, Engel, K, Deindl, S, Das, R, Lamers, M.H, Wemmer, D.E, Zhang, X, Kuriyan, J.
Deposit date:2009-03-27
Release date:2009-07-21
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.955 Å)
Cite:Mechanism for activation of the EGF receptor catalytic domain by the juxtamembrane segment.
Cell(Cambridge,Mass.), 137, 2009
3DZD
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BU of 3dzd by Molmil
Crystal structure of sigma54 activator NTRC4 in the inactive state
Descriptor: ADENOSINE-5'-DIPHOSPHATE, SODIUM ION, Transcriptional regulator (NtrC family)
Authors:Batchelor, J.D, Doucleff, M, Lee, C.-J, Matsubara, K, De Carlo, S, Heideker, J, Lamers, M.M, Pelton, J.G, Wemmer, D.E.
Deposit date:2008-07-29
Release date:2008-11-25
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure and regulatory mechanism of Aquifex aeolicus NtrC4: variability and evolution in bacterial transcriptional regulation.
J.Mol.Biol., 384, 2008
3E7L
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BU of 3e7l by Molmil
Crystal structure of sigma54 activator NtrC4's DNA binding domain
Descriptor: Transcriptional regulator (NtrC family), ZINC ION
Authors:Batchelor, J.D, Doucleff, M, Lee, C.-J, Matsubara, K, De Carlo, S, Heideker, J, Lamers, M.M, Pelton, J.G, Wemmer, D.E.
Deposit date:2008-08-18
Release date:2008-11-25
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.252 Å)
Cite:Structure and regulatory mechanism of Aquifex aeolicus NtrC4: variability and evolution in bacterial transcriptional regulation.
J.Mol.Biol., 384, 2008
2M20
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BU of 2m20 by Molmil
EGFR transmembrane - juxtamembrane (TM-JM) segment in bicelles: MD guided NMR refined structure.
Descriptor: Epidermal growth factor receptor
Authors:Endres, N.F, Das, R, Smith, A, Arkhipov, A, Kovacs, E, Huang, Y, Pelton, J.G, Shan, Y, Shaw, D.E, Wemmer, D.E, Groves, J.T, Kuriyan, J.
Deposit date:2012-12-11
Release date:2013-02-20
Method:SOLUTION NMR
Cite:Conformational Coupling across the Plasma Membrane in Activation of the EGF Receptor.
Cell(Cambridge,Mass.), 152, 2013
4G3W
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BU of 4g3w by Molmil
Crystal structure of a. aeolicus nlh1 gaf domain in an inactive state
Descriptor: Transcriptional regulator nlh1
Authors:Batchelor, J.D, Wang, A, Lee, P, Doucleff, M, Wemmer, D.E.
Deposit date:2012-07-15
Release date:2013-05-29
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural mechanism of GAF-regulated delta(54) activators from Aquifex aeolicus
J.Mol.Biol., 425, 2013
4FTH
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BU of 4fth by Molmil
Crystal Structure of NtrC4 DNA-binding domain bound to double-stranded DNA
Descriptor: 5'-D(*AP*CP*TP*TP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*AP*AP*AP*TP*GP*CP*AP*T)-3', 5'-D(P*GP*AP*TP*GP*CP*AP*TP*TP*TP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*AP*A)-3', Transcriptional regulator (NtrC family)
Authors:Vidangos, N.K, Heideker, J, Lyubimov, A.Y, Lamers, M, Huo, Y, Pelton, J.G, Ton, J, Gralla, J.D, Kuriyan, J, Berger, J.M, Wemmer, D.E.
Deposit date:2012-06-27
Release date:2012-08-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.004 Å)
Cite:DNA Recognition by a sigma (54) Transcriptional Activator from Aquifex aeolicus.
J.Mol.Biol., 426, 2014
4G3V
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BU of 4g3v by Molmil
Crystal structure of A. Aeolicus nlh2 gaf domain in an inactive state
Descriptor: CHLORIDE ION, Transcriptional regulator nlh2
Authors:Batchelor, J.D, Lee, P, Wang, A, Doucleff, M, Wemmer, D.E.
Deposit date:2012-07-15
Release date:2013-05-29
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural mechanism of GAF-regulated delta(54) activators from Aquifex aeolicus
J.Mol.Biol., 425, 2013
4L5E
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BU of 4l5e by Molmil
Crystal structure of A. aeolicus NtrC1 DNA binding domain
Descriptor: SULFATE ION, Transcriptional regulator (NtrC family)
Authors:Young, A, Maris, A.E, Vidangos, N.K, Hong, E, Pelton, J.G, Batchelor, J.D, Wemmer, D.E.
Deposit date:2013-06-10
Release date:2013-08-28
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Structure, function, and tethering of DNA-binding domains in sigma (54) transcriptional activators.
Biopolymers, 99, 2013
4L9U
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BU of 4l9u by Molmil
Structure of C-terminal coiled coil of RasGRP1
Descriptor: GLYCEROL, RAS guanyl-releasing protein 1, SULFATE ION
Authors:Iwig, J.S, Vercoulen, Y, Das, R, Barros, T, Limnander, A, Che, Y, Pelton, J.G, Wemmer, D.E, Roose, J.P, Kuriyan, J.
Deposit date:2013-06-18
Release date:2013-08-21
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.6014 Å)
Cite:Structural analysis of autoinhibition in the Ras-specific exchange factor RasGRP1.
Elife, 2, 2013
4L9M
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BU of 4l9m by Molmil
Autoinhibited state of the Ras-specific exchange factor RasGRP1
Descriptor: CITRIC ACID, GLYCEROL, RAS guanyl-releasing protein 1, ...
Authors:Iwig, J.S, Vercoulen, Y, Das, R, Barros, T, Limnander, A, Che, Y, Pelton, J.G, Wemmer, D.E, Roose, J.P, Kuriyan, J.
Deposit date:2013-06-18
Release date:2013-08-21
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural analysis of autoinhibition in the Ras-specific exchange factor RasGRP1.
Elife, 2, 2013
4L4U
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BU of 4l4u by Molmil
Crystal structure of construct containing A. aeolicus NtrC1 receiver, central and DNA binding domains
Descriptor: Transcriptional regulator (NtrC family)
Authors:Vidangos, N.K, Maris, A.E, Young, A, Hong, E, Pelton, J.G, Batchelor, J.D, Wemmer, D.E.
Deposit date:2013-06-09
Release date:2013-08-28
Last modified:2013-10-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure, function, and tethering of DNA-binding domains in sigma (54) transcriptional activators.
Biopolymers, 99, 2013
1F4V
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BU of 1f4v by Molmil
CRYSTAL STRUCTURE OF ACTIVATED CHEY BOUND TO THE N-TERMINUS OF FLIM
Descriptor: BERYLLIUM TRIFLUORIDE ION, CHEMOTAXIS CHEY PROTEIN, FLAGELLAR MOTOR SWITCH PROTEIN, ...
Authors:Lee, S.Y, Cho, H.S, Pelton, J.G, Yan, D, Henderson, R.K, King, D, Huang, L.S, Kustu, S, Berry, E.A, Wemmer, D.E.
Deposit date:2000-06-10
Release date:2001-01-17
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Crystal structure of an activated response regulator bound to its target.
Nat.Struct.Biol., 8, 2001
204D
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BU of 204d by Molmil
THE SOLUTION STRUCTURES OF PSORALEN MONOADDUCTED AND CROSSLINKED DNA OLIGOMERS BY NMR SPECTROSCOPY AND RESTRAINED MOLECULAR DYNAMICS
Descriptor: 4'-HYDROXYMETHYL-4,5',8-TRIMETHYLPSORALEN, DNA (5'-D(*GP*CP*GP*TP*AP*CP*GP*C)-3')
Authors:Spielmann, H.P, Dwyer, T.J, Hearst, J.E, Wemmer, D.E.
Deposit date:1995-04-06
Release date:1995-09-15
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Solution structures of psoralen monoadducted and cross-linked DNA oligomers by NMR spectroscopy and restrained molecular dynamics.
Biochemistry, 34, 1995
203D
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BU of 203d by Molmil
THE SOLUTION STRUCTURES OF PSORALEN MONOADDUCTED AND CROSSLINKED DNA OLIGOMERS BY NMR SPECTROSCOPY AND RESTRAINED MOLECULAR DYNAMICS
Descriptor: 4'-HYDROXYMETHYL-4,5',8-TRIMETHYLPSORALEN, DNA (5'-D(*GP*CP*GP*TP*AP*CP*GP*C)-3')
Authors:Spielmann, H.P, Dwyer, T.J, Hearst, J.E, Wemmer, D.E.
Deposit date:1995-04-06
Release date:1995-09-15
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Solution structures of psoralen monoadducted and cross-linked DNA oligomers by NMR spectroscopy and restrained molecular dynamics.
Biochemistry, 34, 1995
2BBI
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BU of 2bbi by Molmil
THREE-DIMENSIONAL STRUCTURE OF SOYBEAN TRYPSIN(SLASH)CHYMOTRYPSIN BOWMAN-BIRK INHIBITOR IN SOLUTION
Descriptor: TRYPSIN/CHYMOTRYPSIN BOWMAN-BIRK INHIBITOR
Authors:Werner, M.H, Wemmer, D.E.
Deposit date:1991-09-19
Release date:1993-10-31
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:Three-dimensional structure of soybean trypsin/chymotrypsin Bowman-Birk inhibitor in solution.
Biochemistry, 31, 1992
1TM9
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BU of 1tm9 by Molmil
NMR Structure of gene target number gi3844938 from Mycoplasma genitalium: Berkeley Structural Genomics Center
Descriptor: Hypothetical protein MG354
Authors:Pelton, J.G, Shi, J, Yokota, H, Kim, R, Wemmer, D.E, Berkeley Structural Genomics Center (BSGC)
Deposit date:2004-06-10
Release date:2004-08-10
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:NMR Structure of Gene Target gi3844938 from Mycoplasma genitalium
To be Published
1SXL
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BU of 1sxl by Molmil
RESONANCE ASSIGNMENTS AND SOLUTION STRUCTURE OF THE SECOND RNA-BINDING DOMAIN OF SEX-LETHAL DETERMINED BY MULTIDIMENSIONAL HETERONUCLEAR MAGNETIC RESONANCE SPECTROSCOPY
Descriptor: SEX-LETHAL PROTEIN PROTEIN
Authors:Lee, A.L, Kanaar, R, Rio, D.C, Wemmer, D.E.
Deposit date:1994-07-01
Release date:1994-09-30
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Resonance assignments and solution structure of the second RNA-binding domain of sex-lethal determined by multidimensional heteronuclear magnetic resonance.
Biochemistry, 33, 1994
1DC7
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BU of 1dc7 by Molmil
STRUCTURE OF A TRANSIENTLY PHOSPHORYLATED "SWITCH" IN BACTERIAL SIGNAL TRANSDUCTION
Descriptor: NITROGEN REGULATION PROTEIN
Authors:Kern, D, Volkman, B.F, Luginbuhl, P, Nohaile, M.J, Kustu, S, Wemmer, D.E.
Deposit date:1999-11-04
Release date:2000-01-05
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Structure of a transiently phosphorylated switch in bacterial signal transduction.
Nature, 402, 1999
1DC8
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BU of 1dc8 by Molmil
STRUCTURE OF A TRANSIENTLY PHOSPHORYLATED "SWITCH" IN BACTERIAL SIGNAL TRANSDUCTION
Descriptor: NITROGEN REGULATION PROTEIN
Authors:Kern, D, Volkman, B.F, Luginbuhl, P, Nohaile, M.J, Kustu, S, Wemmer, D.E.
Deposit date:1999-11-04
Release date:2000-01-05
Last modified:2022-12-21
Method:SOLUTION NMR
Cite:Structure of a transiently phosphorylated switch in bacterial signal transduction.
Nature, 402, 1999
1DJM
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BU of 1djm by Molmil
SOLUTION STRUCTURE OF BEF3-ACTIVATED CHEY FROM ESCHERICHIA COLI
Descriptor: CHEMOTAXIS PROTEIN Y
Authors:Cho, H.S, Lee, S.Y, Yan, D, Pan, X, Parkinson, J.S, Kustu, S, Wemmer, D.E, Pelton, J.G.
Deposit date:1999-12-03
Release date:2000-04-05
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:NMR structure of activated CheY.
J.Mol.Biol., 297, 2000

 

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