Author results

4ZOH
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CRYSTAL STRUCTURE OF GLYCERALDEHYDE OXIDOREDUCTASE
Descriptor:Putative oxidoreductase molybdopterin-binding subunit, Putative oxidoreductase FAD-binding subunit, Putative oxidoreductase iron-sulfur subunit, ...
Authors:Nishimasu, H., Fushinobu, S., Wakagi, T.
Deposit date:2015-05-06
Release date:2016-02-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Archaeal Mo-Containing Glyceraldehyde Oxidoreductase Isozymes Exhibit Diverse Substrate Specificities through Unique Subunit Assemblies.
Plos One, 11
2D0D
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CRYSTAL STRUCTURE OF A META-CLEAVAGE PRODUCT HYDROLASE (CUMD) A129V MUTANT
Descriptor:2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase, CHLORIDE ION, PHOSPHATE ION
Authors:Jun, S.Y., Fushinobu, S., Nojiri, H., Omori, T., Shoun, H., Wakagi, T.
Deposit date:2005-08-01
Release date:2006-06-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Improving the catalytic efficiency of a meta-cleavage product hydrolase (CumD) from Pseudomonas fluorescens IP01
Biochim.Biophys.Acta, 1764, 2006
2DRO
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CRYSTAL STRUCTURE OF REDUCING-END-XYLOSE RELEASING EXO-OLIGOXYLANASE D263C MUTANT
Descriptor:Xylanase Y, NICKEL (II) ION, GLYCEROL
Authors:Fushinobu, S., Hidaka, M., Honda, Y., Wakagi, T., Shoun, H., Kitaoka, M.
Deposit date:2006-06-12
Release date:2006-06-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural explanation for the acquisition of glycosynthase activity
J.Biochem., 2009
2DRQ
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CRYSTAL STRUCTURE OF REDUCING-END-XYLOSE RELEASING EXO-OLIGOXYLANASE D263G MUTANT
Descriptor:Xylanase Y, NICKEL (II) ION, GLYCEROL
Authors:Fushinobu, S., Hidaka, M., Honda, Y., Wakagi, T., Shoun, H., Kitaoka, M.
Deposit date:2006-06-12
Release date:2006-06-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural explanation for the acquisition of glycosynthase activity
J.Biochem., 2009
2DRR
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CRYSTAL STRUCTURE OF REDUCING-END-XYLOSE RELEASING EXO-OLIGOXYLANASE D263N MUTANT
Descriptor:Xylanase Y, NICKEL (II) ION, GLYCEROL
Authors:Fushinobu, S., Hidaka, M., Honda, Y., Wakagi, T., Shoun, H., Kitaoka, M.
Deposit date:2006-06-12
Release date:2006-06-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural explanation for the acquisition of glycosynthase activity
J.Biochem., 2009
2DRS
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CRYSTAL STRUCTURE OF REDUCING-END-XYLOSE RELEASING EXO-OLIGOXYLANASE D263S MUTANT
Descriptor:Xylanase Y, NICKEL (II) ION, GLYCEROL
Authors:Fushinobu, S., Hidaka, M., Honda, Y., Wakagi, T., Shoun, H., Kitaoka, M.
Deposit date:2006-06-12
Release date:2006-06-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural explanation for the acquisition of glycosynthase activity
J.Biochem., 2009
1IUN
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META-CLEAVAGE PRODUCT HYDROLASE FROM PSEUDOMONAS FLUORESCENS IP01 (CUMD) S103A MUTANT HEXAGONAL
Descriptor:meta-Cleavage product hydrolase, ACETATE ION
Authors:Fushinobu, S., Saku, T., Hidaka, M., Jun, S.-Y., Nojiri, H., Yamane, H., Shoun, H., Omori, T., Wakagi, T.
Deposit date:2002-03-06
Release date:2002-09-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structures of a meta-cleavage product hydrolase from Pseudomonas fluorescens IP01 (CumD) complexed with cleavage products
PROTEIN SCI., 11, 2002
1IUO
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META-CLEAVAGE PRODUCT HYDROLASE FROM PSEUDOMONAS FLUORESCENS IP01 (CUMD) S103A MUTANT COMPLEXED WITH ACETATES
Descriptor:meta-Cleavage product hydrolase, ACETATE ION
Authors:Fushinobu, S., Saku, T., Hidaka, M., Jun, S.-Y., Nojiri, H., Yamane, H., Shoun, H., Omori, T., Wakagi, T.
Deposit date:2002-03-06
Release date:2002-09-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of a meta-cleavage product hydrolase from Pseudomonas fluorescens IP01 (CumD) complexed with cleavage products
PROTEIN SCI., 11, 2002
1IUP
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META-CLEAVAGE PRODUCT HYDROLASE FROM PSEUDOMONAS FLUORESCENS IP01 (CUMD) S103A MUTANT COMPLEXED WITH ISOBUTYRATES
Descriptor:meta-Cleavage product hydrolase, 2-METHYL-PROPIONIC ACID
Authors:Fushinobu, S., Saku, T., Hidaka, M., Jun, S.-Y., Nojiri, H., Yamane, H., Shoun, H., Omori, T., Wakagi, T.
Deposit date:2002-03-06
Release date:2002-09-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structures of a meta-cleavage product hydrolase from Pseudomonas fluorescens IP01 (CumD) complexed with cleavage products
PROTEIN SCI., 11, 2002
1XER
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STRUCTURE OF FERREDOXIN
Descriptor:FERREDOXIN, ZINC ION, FE3-S4 CLUSTER
Authors:Fujii, T., Hata, Y., Moriyama, H., Wakagi, T., Tanaka, N., Oshima, T.
Deposit date:1996-08-28
Release date:1997-09-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Novel zinc-binding centre in thermoacidophilic archaeal ferredoxins.
Nat.Struct.Biol., 3, 1996
3AHC
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RESTING FORM OF PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE
Descriptor:Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, MAGNESIUM ION, THIAMINE DIPHOSPHATE, ...
Authors:Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHD
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PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE COMPLEXED WITH 2-ACETYL-THIAMINE DIPHOSPHATE
Descriptor:Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, MAGNESIUM ION, 2-ACETYL-THIAMINE DIPHOSPHATE, ...
Authors:Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHE
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PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE COMPLEXED WITH DIHYDROXYETHYL THIAMINE DIPHOSPHATE
Descriptor:Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, MAGNESIUM ION, 2-[3-[(4-AMINO-2-METHYL-5-PYRIMIDINYL)METHYL]-2-(1,2-DIHYDROXYETHYL)-4-METHYL-1,3-THIAZOL-3-IUM-5-YL]ETHYL TRIHYDROGEN DIPHOSPHATE, ...
Authors:Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHF
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PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE COMPLEXED WITH INORGANIC PHOSPHATE
Descriptor:Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, THIAMINE DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHG
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H64A MUTANT OF PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE COMPLEXED WITH A TRICYCLIC RING FORM OF THIAMINE DIPHOSPHATE
Descriptor:Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, MAGNESIUM ION, 2-[(9aR)-2,7-dimethyl-9a,10-dihydro-5H-pyrimido[4,5-d][1,3]thiazolo[3,2-a]pyrimidin-8-yl]ethyl trihydrogen diphosphate, ...
Authors:Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHH
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H142A MUTANT OF PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE COMPLEXED WITH ACETYL THIAMINE DIPHOSPHATE
Descriptor:Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, MAGNESIUM ION, 2-ACETYL-THIAMINE DIPHOSPHATE, ...
Authors:Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHI
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H320A MUTANT OF PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE COMPLEXED WITH ACETYL THIAMINE DIPHOSPHATE
Descriptor:Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, MAGNESIUM ION, 2-ACETYL-THIAMINE DIPHOSPHATE, ...
Authors:Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHJ
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H553A MUTANT OF PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE
Descriptor:Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, MAGNESIUM ION, THIAMINE DIPHOSPHATE, ...
Authors:Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
1J30
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THE CRYSTAL STRUCTURE OF SULERYTHRIN, A RUBRERYTHRIN-LIKE PROTEIN FROM A STRICTLY AEROBIC AND THERMOACIDIPHILIC ARCHAEON
Descriptor:144aa long hypothetical rubrerythrin, FE (III) ION, ZINC ION, ...
Authors:Fushinobu, S., Shoun, H., Wakagi, T.
Deposit date:2003-01-16
Release date:2003-10-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The Crystal Structure of Sulerythrin, A Rubrerythrin-like Protein from A Strictly Aerobic Archaeon, Sulfolobus tokodaii strain 7, shows unexpected domain swapping
Biochemistry, 42, 2003
1J3P
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CRYSTAL STRUCTURE OF THERMOCOCCUS LITORALIS PHOSPHOGLUCOSE ISOMERASE
Descriptor:Phosphoglucose Isomerase, FE (III) ION
Authors:Jeong, J.-J., Fushinobu, S., Ito, S., Hidaka, M., Shoun, H., Wakagi, T.
Deposit date:2003-02-11
Release date:2004-02-24
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Crystal structure of a novel cupin-type phosphoglucose isomerase
To be Published
1J3Q
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CRYSTAL STRUCTURE OF THERMOCOCCUS LITORALIS PHOSPHOGRUCOSE ISOMERASE SOAKED WITH FESO4
Descriptor:Phosphoglucose Isomerase, FE (III) ION
Authors:Jeong, J.-J., Fushinobu, S., Ito, S., Hidaka, M., Shoun, H., Wakagi, T.
Deposit date:2003-02-11
Release date:2004-02-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of a novel cupin-type phosphoglucose isomerase
To be Published
1J3R
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CRYSTAL STRUCTURE OF THERMOCOCCUS LITORALIS PHOSPHOGRUCOSE ISOMERASE COMPLEXED WITH GLUCONATE-6-PHOSPHATE
Descriptor:Phosphoglucose Isomerase, 6-PHOSPHOGLUCONIC ACID, FE (III) ION
Authors:Jeong, J.-J., Fushinobu, S., Ito, S., Hidaka, M., Shoun, H., Wakagi, T.
Deposit date:2003-02-11
Release date:2004-02-24
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Crystal structure of a novel cupin-type phosphoglucose isomerase
To be Published
1WU4
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CRYSTAL STRUCTURE OF REDUCING-END-XYLOSE RELEASING EXO-OLIGOXYLANASE
Descriptor:xylanase Y, NICKEL (II) ION, GLYCEROL
Authors:Fushinobu, S., Hidaka, M., Honda, Y., Wakagi, T., Shoun, H., Kitaoka, M.
Deposit date:2004-12-01
Release date:2005-02-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural Basis for the Specificity of the Reducing End Xylose-releasing Exo-oligoxylanase from Bacillus halodurans C-125
J.Biol.Chem., 280, 2005
1WU5
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CRYSTAL STRUCTURE OF REDUCING-END-XYLOSE RELEASING EXO-OLIGOXYLANASE COMPLEXED WITH XYLOSE
Descriptor:xylanase Y, BETA-D-XYLOPYRANOSE, NICKEL (II) ION, ...
Authors:Fushinobu, S., Hidaka, M., Honda, Y., Wakagi, T., Shoun, H., Kitaoka, M.
Deposit date:2004-12-01
Release date:2005-02-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Basis for the Specificity of the Reducing End Xylose-releasing Exo-oligoxylanase from Bacillus halodurans C-125
J.Biol.Chem., 280, 2005
1WU6
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CRYSTAL STRUCTURE OF REDUCING-END-XYLOSE RELEASING EXO-OLIGOXYLANASE E70A MUTANT COMPLEXED WITH XYLOBIOSE
Descriptor:xylanase Y, BETA-D-XYLOPYRANOSE, NICKEL (II) ION, ...
Authors:Fushinobu, S., Hidaka, M., Honda, Y., Wakagi, T., Shoun, H., Kitaoka, M.
Deposit date:2004-12-01
Release date:2005-02-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural Basis for the Specificity of the Reducing End Xylose-releasing Exo-oligoxylanase from Bacillus halodurans C-125
J.Biol.Chem., 280, 2005