Author results

1IYN
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CRYSTAL STRUCTURE OF CHLOROPLASTIC ASCORBATE PEROXIDASE FROM TOBACCO PLANTS AND STRUCTURAL INSIGHTS FOR ITS INSTABILITY
Descriptor:Chloroplastic ascorbate peroxidase, SODIUM ION, PROTOPORPHYRIN IX CONTAINING FE
Authors:Wada, K., Tada, T., Nakamura, Y.
Deposit date:2002-09-03
Release date:2003-09-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of chloroplastic ascorbate peroxidase from tobacco plants and structural insights into its instability
J.BIOCHEM.(TOKYO), 134, 2003
2D2A
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CRYSTAL STRUCTURE OF ESCHERICHIA COLI SUFA INVOLVED IN BIOSYNTHESIS OF IRON-SULFUR CLUSTERS
Descriptor:SufA protein
Authors:Wada, K., Hasegawa, Y., Gong, Z., Minami, Y., Fukuyama, K., Takahashi, Y.
Deposit date:2005-09-05
Release date:2005-12-13
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of Escherichia coli SufA involved in biosynthesis of iron-sulfur clusters: Implications for a functional dimer
Febs Lett., 579, 2005
2E0K
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CRYSTAL STRUCTURE OF CBIL, A METHYLTRANSFERASE INVOLVED IN ANAEROBIC VITAMIN B12 BIOSYNTHESIS
Descriptor:Precorrin-2 C20-methyltransferase
Authors:Wada, K., Fukuyama, K.
Deposit date:2006-10-10
Release date:2007-01-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of CbiL, a methyltransferase involved in anaerobic vitamin B biosynthesis, and CbiL in complex with S-adenosylhomocysteine--implications for the reaction mechanism.
Febs J., 274, 2007
2E0N
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CRYSTAL STRUCTURE OF CBIL IN COMPLEX WITH S-ADENOSYLHOMOCYSTEINE, A METHYLTRANSFERASE INVOLVED IN ANAEROBIC VITAMIN B12 BIOSYNTHESIS
Descriptor:Precorrin-2 C20-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Wada, K., Fukuyama, K.
Deposit date:2006-10-10
Release date:2007-01-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of CbiL, a methyltransferase involved in anaerobic vitamin B biosynthesis, and CbiL in complex with S-adenosylhomocysteine--implications for the reaction mechanism.
Febs J., 274, 2007
2Z8I
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CRYSTAL STRUCTURE OF ESCHERICHIA COLI GAMMA-GLUTAMYLTRANSPEPTIDASE IN COMPLEX WITH AZASERINE
Descriptor:Gamma-glutamyltranspeptidase, O-DIAZOACETYL-L-SERINE
Authors:Wada, K., Irie, M., Fukuyama, K.
Deposit date:2007-09-05
Release date:2008-06-24
Last modified:2012-04-04
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structures of Escherichia coli gamma-glutamyltranspeptidase in complex with azaserine and acivicin: novel mechanistic implication for inhibition by glutamine antagonists
J.Mol.Biol., 380, 2008
2Z8J
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CRYSTAL STRUCTURE OF ESCHERICHIA COLI GAMMA-GLUTAMYLTRANSPEPTIDASE IN COMPLEX WITH AZASERINE PREPARED IN THE DARK
Descriptor:Gamma-glutamyltranspeptidase, O-DIAZOACETYL-L-SERINE
Authors:Wada, K., Irie, M., Fukuyama, K.
Deposit date:2007-09-05
Release date:2008-06-24
Last modified:2012-04-04
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structures of Escherichia coli gamma-glutamyltranspeptidase in complex with azaserine and acivicin: novel mechanistic implication for inhibition by glutamine antagonists
J.Mol.Biol., 380, 2008
2Z8K
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CRYSTAL STRUCTURE OF ESCHERICHIA COLI GAMMA-GLUTAMYLTRANSPEPTIDASE IN COMPLEX WITH ACIVICIN
Descriptor:Gamma-glutamyltranspeptidase, (2S)-AMINO[(5S)-3-CHLORO-4,5-DIHYDROISOXAZOL-5-YL]ACETIC ACID
Authors:Wada, K., Irie, M., Fukuyama, K.
Deposit date:2007-09-05
Release date:2008-06-24
Last modified:2012-04-04
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structures of Escherichia coli gamma-glutamyltranspeptidase in complex with azaserine and acivicin: novel mechanistic implication for inhibition by glutamine antagonists
J.Mol.Biol., 380, 2008
2ZU0
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CRYSTAL STRUCTURE OF SUFC-SUFD COMPLEX INVOLVED IN THE IRON-SULFUR CLUSTER BIOSYNTHESIS
Descriptor:Protein sufD, Probable ATP-dependent transporter sufC, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
Authors:Wada, K.
Deposit date:2008-10-11
Release date:2009-03-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Molecular dynamism of Fe-S cluster biosynthesis implicated by the structure of SufC(2)-SufD(2) complex
J.Mol.Biol., 387, 2009
3A75
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CRYSTAL STRUCTURE OF GLUTAMATE COMPLEX OF HALOTOLERANT Γ-GLUTAMYLTRANSPEPTIDASE FROM BACILLUS SUBTILIS
Descriptor:Gamma-glutamyltranspeptidase large chain, Gamma-glutamyltranspeptidase small chain, GLUTAMIC ACID
Authors:Wada, K., Fukuyama, K.
Deposit date:2009-09-14
Release date:2010-03-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of the halotolerant gamma-glutamyltranspeptidase from Bacillus subtilis in complex with glutamate reveals a unique architecture of the solvent-exposed catalytic pocket
Febs J., 277, 2010
3AJG
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CRYSTAL STRUCTURE OF PCYA V225D-BILIVERDIN IX ALPHA COMPLEX
Descriptor:Phycocyanobilin:ferredoxin oxidoreductase, BILIVERDINE IX ALPHA
Authors:Wada, K., Hagiwara, Y., Fukuyama, K.
Deposit date:2010-06-05
Release date:2011-03-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:One residue substitution in PcyA leads to unexpected changes in tetrapyrrole substrate binding.
Biochem.Biophys.Res.Commun., 402, 2010
3AJH
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CRYSTAL STRUCTURE OF PCYA V225D-BILIVERDIN XIII ALPHA COMPLEX
Descriptor:Phycocyanobilin:ferredoxin oxidoreductase, 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(3-ethenyl-4-methyl-5-oxo-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-2-ylidene]methyl]-5-[(Z)-(3-ethenyl-4-methyl-5-oxo-pyrrol-2-ylidene)methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid
Authors:Wada, K., Hagiwara, Y., Fukuyama, K.
Deposit date:2010-06-05
Release date:2011-03-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:One residue substitution in PcyA leads to unexpected changes in tetrapyrrole substrate binding.
Biochem.Biophys.Res.Commun., 402, 2010
1UB2
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CRYSTAL STRUCTURE OF CATALASE-PEROXIDASE FROM SYNECHOCOCCUS PCC 7942
Descriptor:Catalase-peroxidase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Wada, K., Tada, T.
Deposit date:2003-03-28
Release date:2004-03-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of catalase-peroxidase from Synechococcus PCC 7942
To be Published
1X19
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CRYSTAL STRUCTURE OF BCHU INVOLVED IN BACTERIOCHLOROPHYLL C BIOSYNTHESIS
Descriptor:CrtF-related protein, SULFATE ION
Authors:Yamaguchi, H., Wada, K., Fukuyama, K.
Deposit date:2005-04-02
Release date:2006-07-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Crystal Structures of BchU, a Methyltransferase Involved in Bacteriochlorophyll c Biosynthesis, and its Complex with S-adenosylhomocysteine: Implications for Reaction Mechanism.
J.Mol.Biol., 360, 2006
1X1A
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CRYSTAL STRUCTURE OF BCHU COMPLEXED WITH S-ADENOSYL-L-METHIONINE
Descriptor:CrtF-related protein, SULFATE ION, S-ADENOSYLMETHIONINE, ...
Authors:Yamaguchi, H., Wada, K., Fukuyama, K.
Deposit date:2005-04-03
Release date:2006-07-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structures of BchU, a Methyltransferase Involved in Bacteriochlorophyll c Biosynthesis, and its Complex with S-adenosylhomocysteine: Implications for Reaction Mechanism.
J.Mol.Biol., 360, 2006
1X1B
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CRYSTAL STRUCTURE OF BCHU COMPLEXED WITH S-ADENOSYL-L-HOMOCYSTEINE
Descriptor:CrtF-related protein, SULFATE ION, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Yamaguchi, H., Wada, K., Fukuyama, K.
Deposit date:2005-04-03
Release date:2006-07-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structures of BchU, a Methyltransferase Involved in Bacteriochlorophyll c Biosynthesis, and its Complex with S-adenosylhomocysteine: Implications for Reaction Mechanism.
J.Mol.Biol., 360, 2006
1X1C
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CRYSTAL STRUCTURE OF BCHU COMPLEXED WITH S-ADENOSYL-L-HOMOCYSTEINE AND ZN2+
Descriptor:CrtF-related protein, ZINC ION, SULFATE ION, ...
Authors:Yamaguchi, H., Wada, K., Fukuyama, K.
Deposit date:2005-04-03
Release date:2006-07-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Crystal Structures of BchU, a Methyltransferase Involved in Bacteriochlorophyll c Biosynthesis, and its Complex with S-adenosylhomocysteine: Implications for Reaction Mechanism.
J.Mol.Biol., 360, 2006
1X1D
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CRYSTAL STRUCTURE OF BCHU COMPLEXED WITH S-ADENOSYL-L-HOMOCYSTEINE AND ZN-BACTERIOPHEOPHORBIDE D
Descriptor:CrtF-related protein, ZINC ION, SULFATE ION, ...
Authors:Yamaguchi, H., Wada, K., Fukuyama, K.
Deposit date:2005-04-04
Release date:2006-07-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal Structures of BchU, a Methyltransferase Involved in Bacteriochlorophyll c Biosynthesis, and its Complex with S-adenosylhomocysteine: Implications for Reaction Mechanism.
J.Mol.Biol., 360, 2006
3WHQ
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CRYSTAL STRUCTURE OF GAMMA-GLUTAMYLTRANSPEPTIDASE FROM BACILLUS SUBTILIS (CRYSTAL SOAKED FOR 0 MIN. IN ACIVICIN SOLN. )
Descriptor:Gamma-glutamyltranspeptidase large chain, Gamma-glutamyltranspeptidase small chain
Authors:Wada, K., Fukuyama, K.
Deposit date:2013-08-30
Release date:2014-02-19
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure of Bacillus subtilis gamma-glutamyl-transpeptidase in complex with acivicin: diversity of the binding mode of a classical and electrophilic active-site-directed glutamate analogue
Acta Crystallogr.,Sect.D, 70, 2014
3WHS
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CRYSTAL STRUCTURE OF BACILLUS SUBTILIS GAMMA-GLUTAMYLTRANSPEPTIDASE IN COMPLEX WITH ACIVICIN
Descriptor:Gamma-glutamyltranspeptidase large chain, Gamma-glutamyltranspeptidase small chain, (2S)-AMINO[(5S)-3-CHLORO-4,5-DIHYDROISOXAZOL-5-YL]ACETIC ACID
Authors:Wada, K., Fukuyama, K.
Deposit date:2013-08-30
Release date:2014-02-19
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of Bacillus subtilis gamma-glutamyl-transpeptidase in complex with acivicin: diversity of the binding mode of a classical and electrophilic active-site-directed glutamate analogue
Acta Crystallogr.,Sect.D, 70, 2014
5B5T
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CRYSTAL STRUCTURE OF ESCHERICHIA COLI GAMMA-GLUTAMYLTRANSPEPTIDASE IN COMPLEX WITH PEPTIDYL PHOSPHONATE INHIBITOR 1B
Descriptor:Gamma-glutamyltranspeptidase large chain, Gamma-glutamyltranspeptidase small chain, (2~{S})-2-azanyl-4-[(2~{R})-1-(2-hydroxy-2-oxoethylamino)-1-oxidanylidene-butan-2-yl]oxyphosphonoyl-butanoic acid, ...
Authors:Wada, K., Fukuyama, K.
Deposit date:2016-05-18
Release date:2016-09-28
Last modified:2016-10-26
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Phosphonate-based irreversible inhibitors of human gamma-glutamyl transpeptidase (GGT). GGsTop is a non-toxic and highly selective inhibitor with critical electrostatic interaction with an active-site residue Lys562 for enhanced inhibitory activity
Bioorg.Med.Chem., 24, 2016
3WXO
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CRYSTAL STRUCTURE OF ISONIAZID BOUND KATG CATALASE PEROXIDASE FROM SYNECHOCOCCUS ELONGATUS PCC7942
Descriptor:Catalase-peroxidase, PROTOPORPHYRIN IX CONTAINING FE, pyridine-4-carbohydrazide, ...
Authors:Wada, K., Tada, T., Kamachi, S.
Deposit date:2014-08-04
Release date:2015-01-21
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:The crystal structure of isoniazid-bound KatG catalase-peroxidase from Synechococcus elongatus PCC7942.
Febs J., 282, 2015
2E0W
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T391A PRECURSOR MUTANT PROTEIN OF GAMMA-GLUTAMYLTRANSPEPTIDASE FROM ESCHERICHIA COLI
Descriptor:Gamma-glutamyltranspeptidase
Authors:Okada, T., Wada, K., Fukuyama, K.
Deposit date:2006-10-16
Release date:2006-11-28
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Crystal structure of the gamma-glutamyltranspeptidase precursor protein from Escherichia coli. Structural changes upon autocatalytic processing and implications for the maturation mechanism
J.Biol.Chem., 282, 2007
2E0X
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CRYSTAL STRUCTURE OF GAMMA-GLUTAMYLTRANSPEPTIDASE FROM ESCHERICHIA COLI (MONOCLINIC FORM)
Descriptor:Gamma-glutamyltranspeptidase, CALCIUM ION
Authors:Okada, T., Wada, K., Fukuyama, K.
Deposit date:2006-10-16
Release date:2006-11-28
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of the gamma-glutamyltranspeptidase precursor protein from Escherichia coli. Structural changes upon autocatalytic processing and implications for the maturation mechanism
J.Biol.Chem., 282, 2007
2E0Y
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CRYSTAL STRUCTURE OF THE SAMARIUM DERIVATIVE OF MATURE GAMMA-GLUTAMYLTRANSPEPTIDASE FROM ESCHERICHIA COLI
Descriptor:Gamma-glutamyltranspeptidase, GLYCEROL, SAMARIUM (III) ION
Authors:Okada, T., Wada, K., Fukuyama, K.
Deposit date:2006-10-16
Release date:2006-11-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Crystal structure of the gamma-glutamyltranspeptidase precursor protein from Escherichia coli. Structural changes upon autocatalytic processing and implications for the maturation mechanism
J.Biol.Chem., 282, 2007
5B3T
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CRYSTAL STRUCTURE OF APO-FORM BILIVERDIN REDUCTASE FROM SYNECHOCYSTIS SP. PCC 6803
Descriptor:Biliverdin reductase, PHOSPHATE ION
Authors:Takao, H., Wada, K.
Deposit date:2016-03-12
Release date:2017-02-15
Last modified:2017-02-22
Method:X-RAY DIFFRACTION (2.099 Å)
Cite:A substrate-bound structure of cyanobacterial biliverdin reductase identifies stacked substrates as critical for activity
Nat Commun, 8, 2017
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