Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
2GB8
DownloadVisualize
BU of 2gb8 by Molmil
Solution structure of the complex between yeast iso-1-cytochrome c and yeast cytochrome c peroxidase
Descriptor: Cytochrome c iso-1, Cytochrome c peroxidase, HEME C, ...
Authors:Volkov, A.N, Worrall, J.A.R, Ubbink, M.
Deposit date:2006-03-10
Release date:2006-11-21
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Solution structure and dynamics of the complex between cytochrome c and cytochrome c peroxidase determined by paramagnetic NMR.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2JTI
DownloadVisualize
BU of 2jti by Molmil
Solution structure of the yeast iso-1-cytochrome c (T12A) : yeast cytochrome c peroxidase complex
Descriptor: Cytochrome c iso-1, Cytochrome c peroxidase, mitochondrial, ...
Authors:Ubbink, M, Volkov, A.N.
Deposit date:2007-08-01
Release date:2008-07-22
Last modified:2021-10-20
Method:SOLUTION NMR
Cite:Shifting the equilibrium between the encounter state and the specific form of a protein complex by interfacial point mutations.
J.Am.Chem.Soc., 132, 2010
6HKC
DownloadVisualize
BU of 6hkc by Molmil
Solution structure of the Sushi 1 domain of GABAbR1a
Descriptor: Gamma-aminobutyric acid type B receptor subunit 1
Authors:Volkov, A.N, Buts, L, Van Molle, I.
Deposit date:2018-09-06
Release date:2019-01-23
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Secreted amyloid-beta precursor protein functions as a GABABR1a ligand to modulate synaptic transmission.
Science, 363, 2019
6TR8
DownloadVisualize
BU of 6tr8 by Molmil
Corynebacterium diphtheriae methionine sulfoxide reductase B (MsrB) solution structure - reduced form
Descriptor: Peptide-methionine (R)-S-oxide reductase, ZINC ION
Authors:Volkov, A.N, Tossounian, M.A, Buts, L, Messens, J.
Deposit date:2019-12-18
Release date:2020-02-05
Last modified:2020-03-25
Method:SOLUTION NMR
Cite:Methionine sulfoxide reductase B fromCorynebacterium diphtheriaecatalyzes sulfoxide reduction via an intramolecular disulfide cascade.
J.Biol.Chem., 295, 2020
8OIL
DownloadVisualize
BU of 8oil by Molmil
Plasmodium falciparum circumsporozoite protein C-terminal domain
Descriptor: Circumsporozoite protein
Authors:Sterckx, Y.G.-J, Volkov, A.N, Geens, R.
Deposit date:2023-03-23
Release date:2024-02-28
Method:SOLUTION NMR, SOLUTION SCATTERING
Cite:Plasmodium falciparum circumsporozoite protein C-terminal domain
To Be Published
7NKV
DownloadVisualize
BU of 7nkv by Molmil
PaaR2 regulator N-terminal domain
Descriptor: Phage repressor protein CI
Authors:Prolic-Kalinsek, M, Loris, R, Volkov, A.N.
Deposit date:2021-02-19
Release date:2022-03-02
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Regulation of the Escherichia coli paaR2-paaA2-ParD2 toxin-antitoxin system
To Be Published
8C7K
DownloadVisualize
BU of 8c7k by Molmil
YdaS from E. coli O157:H7 cryptic prophage CP-933P
Descriptor: Phage antirepressor protein Cro
Authors:Prolic-Kalinsek, M, Volkov, A.N, Loris, R.
Deposit date:2023-01-16
Release date:2023-01-25
Last modified:2023-03-22
Method:SOLUTION NMR
Cite:Structural basis of DNA binding by YdaT, a functional equivalent of the CII repressor in the cryptic prophage CP-933P from Escherichia coli O157:H7.
Acta Crystallogr D Struct Biol, 79, 2023
6YSE
DownloadVisualize
BU of 6yse by Molmil
Gp4 from the Pseudomonas phage LUZ24
Descriptor: Gp4
Authors:Bdira, F.B, Volkov, A.N, Dame, R.T.
Deposit date:2020-04-22
Release date:2021-05-12
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Novel anti-repression mechanism of H-NS proteins by a phage protein.
Nucleic Acids Res., 49, 2021
4JB4
DownloadVisualize
BU of 4jb4 by Molmil
Expression, Purification, Characterization, and Solution NMR Study of Highly Deuterated Yeast Cytochrome c Peroxidase with Enhanced Solubility
Descriptor: Cytochrome c peroxidase, mitochondrial, FLUORIDE ION, ...
Authors:Wohlkonig, A.C.
Deposit date:2013-02-19
Release date:2013-04-10
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Expression, purification, characterization, and solution nuclear magnetic resonance study of highly deuterated yeast cytochrome C peroxidase with enhanced solubility.
Biochemistry, 52, 2013
2V20
DownloadVisualize
BU of 2v20 by Molmil
Structure of a TEM-1 beta-lactamase insertant allosterically regulated by kanamycin and anions. Complex with sulfate.
Descriptor: BETA-LACTAMASE TEM, SULFATE ION, ZINC ION
Authors:Evrard, C, Barrios, H, Mathonet, P, Soumillion, P, Fastrez, J, Declercq, J.P.
Deposit date:2007-05-31
Release date:2008-06-24
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Engineering an Allosteric Binding Site for Aminoglycosides Into Tem1-Beta-Lactamase.
Chembiochem, 12, 2011
2V1Z
DownloadVisualize
BU of 2v1z by Molmil
Structure of a TEM-1 beta-lactamase insertant allosterically regulated by kanamycin and anions.
Descriptor: BETA-LACTAMASE TEM, ZINC ION
Authors:Evrard, C, Barrios, H, Mathonet, P, Soumillion, P, Fastrez, J, Declercq, J.P.
Deposit date:2007-05-31
Release date:2008-06-24
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Engineering an Allosteric Binding Site for Aminoglycosides Into Tem1-Beta-Lactamase.
Chembiochem, 12, 2011
7R5A
DownloadVisualize
BU of 7r5a by Molmil
Vibrio cholera ParD2:ParE2 antitoxin:toxin complex
Descriptor: Antitoxin ParD, Toxin
Authors:Garcia-Rodriguez, G, Loris, R.
Deposit date:2022-02-10
Release date:2022-04-27
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Toxin:antitoxin ratio sensing autoregulation of the Vibrio cholerae parDE2 module.
Sci Adv, 10, 2024
8Q7C
DownloadVisualize
BU of 8q7c by Molmil
Cryo-EM structure of Adenovirus C5 hexon
Descriptor: Hexon protein
Authors:Zoll, S, Dhillon, A.
Deposit date:2023-08-16
Release date:2023-08-30
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural insights into the interaction between adenovirus C5 hexon and human lactoferrin.
J.Virol., 98, 2024
2N18
DownloadVisualize
BU of 2n18 by Molmil
Dominant form of the low-affinity complex of yeast cytochrome c and cytochrome c peroxidase
Descriptor: Cytochrome c iso-1, Cytochrome c peroxidase, mitochondrial, ...
Authors:Volkov, A, Van de Water, K.
Deposit date:2015-03-24
Release date:2015-05-13
Last modified:2015-05-20
Method:SOLUTION NMR
Cite:The low-affinity complex of cytochrome c and its peroxidase.
Nat Commun, 6, 2015
8A21
DownloadVisualize
BU of 8a21 by Molmil
Crystal structure of Phosphoserine phosphatase SerB from Mycobacterium avium in complex with phenylimidazole
Descriptor: 4-PHENYL-1H-IMIDAZOLE, CHLORIDE ION, GLYCEROL, ...
Authors:Haufroid, M, Wouters, J.
Deposit date:2022-06-02
Release date:2022-11-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Targeting the phosphoserine phosphatase MtSerB2 for tuberculosis drug discovery, an hybrid knowledge based /fragment based approach.
Eur.J.Med.Chem., 245, 2022
8A1Z
DownloadVisualize
BU of 8a1z by Molmil
Crystal structure of Phosphoserine phosphatase SerB from Mycobacterium avium in complex with 1-(2,4-dichlorophenyl)-3-hydroxyurea
Descriptor: 1-(2,4-dichlorophenyl)-3-oxidanyl-urea, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Haufroid, M, Wouters, J.
Deposit date:2022-06-02
Release date:2022-11-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Targeting the phosphoserine phosphatase MtSerB2 for tuberculosis drug discovery, an hybrid knowledge based /fragment based approach.
Eur.J.Med.Chem., 245, 2022
7B22
DownloadVisualize
BU of 7b22 by Molmil
Vibrio cholerae ParD2 Antitoxin
Descriptor: Antitoxin ParD
Authors:Garcia-Rodriguez, G, Loris, R.
Deposit date:2020-11-25
Release date:2021-10-06
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.08 Å)
Cite:Entropic pressure controls the oligomerization of the Vibrio cholerae ParD2 antitoxin.
Acta Crystallogr D Struct Biol, 77, 2021
4LOV
DownloadVisualize
BU of 4lov by Molmil
Crystal structure of FimH in complex with Heptylmannoside
Descriptor: GLYCEROL, Protein FimH, SODIUM ION, ...
Authors:Garcia-Pino, A, Vanwetswinkel, S, van Nuland, N.
Deposit date:2013-07-13
Release date:2014-02-12
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Study of the Structural and Dynamic Effects in the FimH Adhesin upon alpha-d-Heptyl Mannose Binding.
J.Med.Chem., 57, 2014
7VUS
DownloadVisualize
BU of 7vus by Molmil
Crystal structure of AlleyCat9 with 5-nitro-benzotriazole
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 5-nitro-1H-benzotriazole, AlleyCat, ...
Authors:Tame, J.R.H, Korendovych, I.V, Margheritis, E, Takahashi, K.
Deposit date:2021-11-04
Release date:2022-07-27
Last modified:2022-10-26
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:NMR-guided directed evolution.
Nature, 610, 2022
7VUC
DownloadVisualize
BU of 7vuc by Molmil
Myoglobin mutant L29I/H64G/V68A
Descriptor: IMIDAZOLE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Takahashi, K, Korendovych, I.V, Tame, J.R.H.
Deposit date:2021-11-02
Release date:2022-07-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:NMR-guided directed evolution.
Nature, 610, 2022
7VUU
DownloadVisualize
BU of 7vuu by Molmil
Crystal structure of AlleyCat10 with inhibitor
Descriptor: 5-nitro-1H-benzotriazole, AlleyCat, CALCIUM ION
Authors:Tame, J.R.H, Korendovych, I.V, Margheritis, E, Takahashi, K.
Deposit date:2021-11-04
Release date:2022-07-27
Last modified:2022-10-26
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:NMR-guided directed evolution.
Nature, 610, 2022
7VUR
DownloadVisualize
BU of 7vur by Molmil
Crystal structure of AlleyCat9 with calcium but no inhibitor
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, AlleyCat, CALCIUM ION
Authors:Margheritis, E, Takahashi, K, Korendovych, I.V, Tame, J.R.H.
Deposit date:2021-11-04
Release date:2022-07-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:NMR-guided directed evolution.
Nature, 610, 2022
7VUT
DownloadVisualize
BU of 7vut by Molmil
Crystal structure of AlleyCat10
Descriptor: AlleyCat10, CALCIUM ION
Authors:Tame, J.R.H, Korendovych, I.V, Margheritis, E, Takahashi, K.
Deposit date:2021-11-04
Release date:2022-07-27
Last modified:2022-10-26
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:NMR-guided directed evolution.
Nature, 610, 2022
8CN3
DownloadVisualize
BU of 8cn3 by Molmil
hDLG1-PDZ2 in complex with a TAX1 peptide from HTLV-1
Descriptor: Disks large homolog 1, GLU-THR-GLU-VAL
Authors:Maseko, S, Sogues, A, Volkov, A, Remaut, H, Twizere, J.C.
Deposit date:2023-02-21
Release date:2023-08-02
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:Identification of small molecule antivirals against HTLV-1 by targeting the hDLG1-Tax-1 protein-protein interaction.
Antiviral Res., 217, 2023
8CN1
DownloadVisualize
BU of 8cn1 by Molmil
hDLG1-PDZ1 in complex with a TAX1 peptide from HTLV-1
Descriptor: Disks large homolog 1, GLU-THR-GLU-VAL, SULFATE ION
Authors:Maseko, S, Sogues, A, Volkov, A, Remaut, H, Twizere, J.C.
Deposit date:2023-02-21
Release date:2023-08-02
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Identification of small molecule antivirals against HTLV-1 by targeting the hDLG1-Tax-1 protein-protein interaction.
Antiviral Res., 217, 2023

 

12>

218196

PDB entries from 2024-04-10

PDB statisticsPDBj update infoContact PDBjnumon