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1V40
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BU of 1v40 by Molmil
First Inhibitor Complex Structure of Human Hematopoietic Prostaglandin D Synthase
Descriptor: 3-(1,3-BENZOTHIAZOL-2-YL)-2-(1,4-DIOXO-1,2,3,4-TETRAHYDROPHTHALAZIN-6-YL)-5-[(E)-2-PHENYLVINYL]-3H-TETRAAZOL-2-IUM, GLUTATHIONE, GLYCEROL, ...
Authors:Inoue, T, Okano, Y, Kado, Y, Aritake, K, Irikura, D, Uodome, N, Kinugasa, S, Okazaki, N, Matsumura, H, Kai, Y, Urade, Y.
Deposit date:2003-11-07
Release date:2004-11-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:First determination of the inhibitor complex structure of human hematopoietic prostaglandin D synthase.
J.Biochem.(Tokyo), 135, 2004
2CZU
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BU of 2czu by Molmil
lipocalin-type prostaglandin D synthase
Descriptor: Prostaglandin-H2 D-isomerase
Authors:Kumasaka, T, Irikura, D, Ago, H, Aritake, K, Yamamoto, M, Inoue, T, Miyano, M, Urade, Y, Hayaishi, O, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-17
Release date:2006-10-03
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis of the catalytic mechanism operating in open-closed conformers of lipocalin type prostaglandin D synthase.
J.Biol.Chem., 284, 2009
2CZT
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BU of 2czt by Molmil
lipocalin-type prostaglandin D synthase
Descriptor: Prostaglandin-H2 D-isomerase
Authors:Kumasaka, T, Irikura, D, Ago, H, Aritake, K, Yamamoto, M, Inoue, T, Miyano, M, Urade, Y, Hayaishi, O, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-17
Release date:2006-10-03
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of the catalytic mechanism operating in open-closed conformers of lipocalin type prostaglandin D synthase.
J.Biol.Chem., 284, 2009
2CVD
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BU of 2cvd by Molmil
Crystal structure analysis of human hematopoietic prostaglandin D synthase complexed with HQL-79
Descriptor: 4-(BENZHYDRYLOXY)-1-[3-(1H-TETRAAZOL-5-YL)PROPYL]PIPERIDINE, GLUTATHIONE, GLYCEROL, ...
Authors:Aritake, K, Kado, Y, Inoue, T, Miyano, M, Urade, Y.
Deposit date:2005-06-02
Release date:2006-04-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural and Functional Characterization of HQL-79, an Orally Selective Inhibitor of Human Hematopoietic Prostaglandin D Synthase.
J.Biol.Chem., 281, 2006
3ATZ
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BU of 3atz by Molmil
Crystal structure of TcOYE with pHBA
Descriptor: FLAVIN MONONUCLEOTIDE, P-HYDROXYBENZALDEHYDE, Prostaglandin F2a synthase
Authors:Okamoto, N, Yamaguchi, K, Mizohata, E, Tokuoka, K, Uchiyama, N, Sugiyama, S, Matsumura, H, Inaka, K, Urade, Y, Inoue, T.
Deposit date:2011-01-26
Release date:2012-02-01
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Structural insight into the stereoselective production of PGF2(alpha) by Old Yellow Enzyme from Trypanosoma cruzi
J.Biochem., 150, 2011
3ATY
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BU of 3aty by Molmil
Crystal structure of TcOYE
Descriptor: FLAVIN MONONUCLEOTIDE, Prostaglandin F2a synthase
Authors:Yamaguchi, K, Okamoto, N, Tokuoka, K, Sugiyama, S, Uchiyama, N, Matsumura, H, Inaka, K, Urade, Y, Inoue, T.
Deposit date:2011-01-26
Release date:2011-05-04
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural insight into the stereoselective production of PGF2(alpha) by Old Yellow Enzyme from Trypanosoma cruzi
J.Biochem., 150, 2011
5Y9Z
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BU of 5y9z by Molmil
Crystal structure of rat hematopoietic prostaglandin D synthase
Descriptor: 1,2-ETHANEDIOL, 1,4-DIETHYLENE DIOXIDE, GLUTATHIONE, ...
Authors:Kamo, M, Furubayashi, N, Inaka, K, Tanaka, H, Aritake, K, Urade, Y.
Deposit date:2017-08-29
Release date:2018-09-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.09 Å)
Cite:Crystal structure of rat hematopoietic prostaglandin D synthase
To Be Published
5YX1
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BU of 5yx1 by Molmil
Crystal structure of hematopoietic prostaglandin D synthase in complex with U004
Descriptor: GLUTATHIONE, GLYCEROL, Hematopoietic prostaglandin D synthase, ...
Authors:Kamo, M, Furubayashi, N, Inaka, K, Aritake, K, Urade, Y, Takaya, D, Tanaka, A.
Deposit date:2017-12-01
Release date:2018-12-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:Crystal structure of hematopoietic prostaglandin D synthase in complex with U004
To Be Published
5YWE
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BU of 5ywe by Molmil
Crystal structure of hematopoietic prostaglandin D synthase apo form
Descriptor: GLUTATHIONE, GLYCEROL, Hematopoietic prostaglandin D synthase, ...
Authors:Kamo, M, Furubayashi, N, Inaka, K, Aritake, K, Urade, Y.
Deposit date:2017-11-29
Release date:2018-12-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Crystal structure of hematopoietic prostaglandin D synthase apo form
To Be Published
1PD2
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BU of 1pd2 by Molmil
CRYSTAL STRUCTURE OF HEMATOPOIETIC PROSTAGLANDIN D SYNTHASE COMPLEX WITH GLUTATHIONE
Descriptor: GLUTATHIONE, HEMATOPOIETIC PROSTAGLANDIN D SYNTHASE
Authors:Miyano, M, Ago, H.
Deposit date:1998-12-14
Release date:1999-10-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Cloning and crystal structure of hematopoietic prostaglandin D synthase.
Cell(Cambridge,Mass.), 90, 1997
2KTD
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BU of 2ktd by Molmil
Solution structure of mouse lipocalin-type prostaglandin D synthase / substrate analog (U-46619) complex
Descriptor: (5Z)-7-{(1R,4S,5S,6R)-6-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-2-oxabicyclo[2.2.1]hept-5-yl}hept-5-enoic acid, Prostaglandin-H2 D-isomerase
Authors:Shimamoto, S, Maruo, H, Yoshida, T, Kato, N, Ohkubo, T.
Deposit date:2010-01-27
Release date:2011-02-02
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Structure of Lipocalin-type Prostaglandin D synthase / Substrate analog complex reveals Open-Closed Conformational Change required for Substrate Recognition
To be Published
2RQ0
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BU of 2rq0 by Molmil
Solution Structure of Mouse Lipocalin-type Prostaglandin D Synthase Possessing the Intrinsic Disulfide Bond
Descriptor: Prostaglandin-H2 D-isomerase
Authors:Miyamoto, Y, Nishimura, S, Inui, T.
Deposit date:2008-12-24
Release date:2009-12-15
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural analysis of lipocalin-type prostaglandin D synthase complexed with biliverdin by small-angle X-ray scattering and multi-dimensional NMR.
J.Struct.Biol., 2009
1IYI
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BU of 1iyi by Molmil
Crystal structure of hematopoietic prostaglandin D synthase
Descriptor: CALCIUM ION, GLUTATHIONE, HEMATOPOIETIC PROSTAGLANDIN D SYNTHASE
Authors:Inoue, T.
Deposit date:2002-08-26
Release date:2003-04-08
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Mechanism of metal activation of human hematopoietic prostaglandin D synthase
NAT.STRUCT.BIOL., 10, 2003
1IYH
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BU of 1iyh by Molmil
Crystal structure of hematopoietic prostaglandin D synthase
Descriptor: GLUTATHIONE, HEMATOPOIETIC PROSTAGLANDIN D SYNTHASE, MAGNESIUM ION
Authors:Inoue, T.
Deposit date:2002-08-26
Release date:2003-04-08
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Mechanism of metal activation of human hematopoietic prostaglandin D synthase
NAT.STRUCT.BIOL., 10, 2003
5H5L
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BU of 5h5l by Molmil
Structure of prostaglandin synthase D of Nilaparvata lugens
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, GLUTATHIONE, ...
Authors:Yamamoto, K, Higashiura, A, Suzuki, S, Nakagawa, A.
Deposit date:2016-11-07
Release date:2017-09-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.999 Å)
Cite:Molecular structure of a prostaglandin D synthase requiring glutathione from the brown planthopper, Nilaparvata lugens
Biochem. Biophys. Res. Commun., 492, 2017
3VI7
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BU of 3vi7 by Molmil
Human hematopoietic prostaglandin D synthase inhibitor complex structures
Descriptor: CALCIUM ION, CIBACRON BLUE, GLUTATHIONE, ...
Authors:Kado, Y, Inoue, T.
Deposit date:2011-09-21
Release date:2012-04-18
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Human hematopoietic prostaglandin D synthase inhibitor complex structures
J.Biochem., 151, 2012
3VI5
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BU of 3vi5 by Molmil
Human hematopoietic prostaglandin D synthase inhibitor complex structures
Descriptor: 1-amino-9,10-dioxo-4-[(4-sulfamoylphenyl)amino]-9,10-dihydroanthracene-2-sulfonic acid, CALCIUM ION, GLUTATHIONE, ...
Authors:Kado, Y, Inoue, T.
Deposit date:2011-09-21
Release date:2012-04-18
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Human hematopoietic prostaglandin D synthase inhibitor complex structures
J.Biochem., 151, 2012
5YWX
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BU of 5ywx by Molmil
Crystal structure of hematopoietic prostaglandin D synthase in complex with F092
Descriptor: GLUTATHIONE, GLYCEROL, Hematopoietic prostaglandin D synthase, ...
Authors:Kamo, M, Furubayashi, N, Inaka, K, Aritake, K, Omura, A, Tanaka, A.
Deposit date:2017-11-30
Release date:2018-09-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Characterization of crystal water molecules in a high-affinity inhibitor and hematopoietic prostaglandin D synthase complex by interaction energy studies.
Bioorg. Med. Chem., 26, 2018
3VPQ
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BU of 3vpq by Molmil
Crystal structure of Bombyx mori sigma-class glutathione transferase in complex with glutathione
Descriptor: DI(HYDROXYETHYL)ETHER, GLUTATHIONE, Glutathione S-transferase sigma, ...
Authors:Yamamoto, K, Higashiura, A, Nakagawa, A, Suzuki, M.
Deposit date:2012-03-08
Release date:2013-03-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.702 Å)
Cite:Crystal structure of a Bombyx mori sigma-class glutathione transferase exhibiting prostaglandin E synthase activity
Biochim.Biophys.Acta, 1830, 2013
3VPT
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BU of 3vpt by Molmil
Crystal structure of Bombyx mori sigma-class glutathione transferase in apo form
Descriptor: DI(HYDROXYETHYL)ETHER, Glutathione S-transferase sigma, S-1,2-PROPANEDIOL, ...
Authors:Yamamoto, K, Higashiura, A, Suzuki, M, Nakagawa, A.
Deposit date:2012-03-13
Release date:2013-03-06
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of a Bombyx mori sigma-class glutathione transferase exhibiting prostaglandin E synthase activity
Biochim.Biophys.Acta, 1830, 2013

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