Author results

2PCF
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THE COMPLEX OF CYTOCHROME F AND PLASTOCYANIN DETERMINED WITH PARAMAGNETIC NMR. BASED ON THE STRUCTURES OF CYTOCHROME F AND PLASTOCYANIN, 10 STRUCTURES
Descriptor:PLASTOCYANIN, CYTOCHROME F, COPPER (II) ION, ...
Authors:Ubbink, M., Ejdeback, M., Karlsson, B.G., Bendall, D.S.
Deposit date:1997-12-22
Release date:1998-04-08
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The structure of the complex of plastocyanin and cytochrome f, determined by paramagnetic NMR and restrained rigid-body molecular dynamics.
Structure, 6, 1998
2JTI
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SOLUTION STRUCTURE OF THE YEAST ISO-1-CYTOCHROME C (T12A) : YEAST CYTOCHROME C PEROXIDASE COMPLEX
Descriptor:Cytochrome c peroxidase, mitochondrial, Cytochrome c iso-1, ...
Authors:Ubbink, M., Volkov, A.N.
Deposit date:2007-08-01
Release date:2008-07-22
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Shifting the equilibrium between the encounter state and the specific form of a protein complex by interfacial point mutations.
J.Am.Chem.Soc., 132, 2010
2IDF
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P. AERUGINOSA AZURIN N42C/M64E DOUBLE MUTANT, BMME-LINKED DIMER
Descriptor:Azurin, COPPER (II) ION, NICKEL (II) ION, ...
Authors:Einsle, O., de Jongh, T.E., Hoffmann, M., Cavazzini, D., Rossi, G.L., Ubbink, M., Canters, G.W.
Deposit date:2006-09-15
Release date:2008-03-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Electron transfer in a crosslinked protein dimer mediated by a hydrogen-bonded network across the dimer interface
To be Published
1JVL
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AZURIN DIMER, COVALENTLY CROSSLINKED THROUGH BIS-MALEIMIDOMETHYLETHER
Descriptor:Azurin, COPPER (II) ION, NICKEL (II) ION, ...
Authors:van Amsterdam, I.M.C., Ubbink, M., Einsle, O., Messerschmidt, A., Merli, A., Cavazzini, D., Rossi, G.L., Canters, G.W.
Deposit date:2001-08-30
Release date:2002-01-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Dramatic modulation of electron transfer in protein complexes by crosslinking
Nat.Struct.Biol., 9, 2002
1JVO
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AZURIN DIMER, CROSSLINKED VIA DISULFIDE BRIDGE
Descriptor:Azurin, COPPER (II) ION
Authors:van Amsterdam, I.M.C., Ubbink, M., Einsle, O., Messerschmidt, A., Merli, A., Cavazzini, D., Rossi, G.L., Canters, G.W.
Deposit date:2001-08-30
Release date:2002-01-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Dramatic modulation of electron transfer in protein complexes by crosslinking
Nat.Struct.Biol., 9, 2002
1PY0
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CRYSTAL STRUCTURE OF E51C/E54C PSAZ FROM A.FAECALIS WITH CLANP PROBE
Descriptor:Pseudoazurin, ZINC ION, YTTRIUM ION, ...
Authors:Prudencio, M., Rohovec, J., Peters, J.A., Tocheva, E., Boulanger, M.J., Murphy, M.E., Hupkes, H.J., Kosters, W., Impagliazzo, A., Ubbink, M.
Deposit date:2003-07-07
Release date:2004-12-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:A caged lanthanide complex as a paramagnetic shift agent for protein NMR.
Chemistry, 10, 2004
1Y7N
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SOLUTION STRUCTURE OF THE SECOND PDZ DOMAIN OF THE HUMAN NEURONAL ADAPTOR X11ALPHA
Descriptor:Amyloid beta A4 precursor protein-binding family A member 1
Authors:Duquesne, A.E., de Ruijter, M., Brouwer, J., Drijfhout, J.W., Nabuurs, S.B., Spronk, C.A.E.M., Vuister, G.W., Ubbink, M., Canters, G.W.
Deposit date:2004-12-09
Release date:2005-11-22
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the second PDZ domain of the neuronal adaptor X11alpha and its interaction with the C-terminal peptide of the human copper chaperone for superoxide dismutase
J.Biomol.Nmr, 32, 2005
2IWE
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STRUCTURE OF A CAVITY MUTANT (H117G) OF PSEUDOMONAS AERUGINOSA AZURIN
Descriptor:AZURIN, ZINC ION, 1,1'-HEXANE-1,6-DIYLBIS(1H-IMIDAZOLE)
Authors:De Jongh, T.E., Van Roon, A.M.M., Prudencio, M., Ubbink, M., Canters, G.W.
Deposit date:2006-06-29
Release date:2007-06-12
Last modified:2018-05-30
Method:X-RAY DIFFRACTION (2.83 Å)
Cite:Click-Chemistry with an Active Site Variant of Azurin
Eur.J.Inorg.Chem., 2006, 2006
2OJ1
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DISULFIDE-LINKED DIMER OF AZURIN N42C/M64E DOUBLE MUTANT
Descriptor:Azurin, COPPER (II) ION
Authors:de Jongh, T.E., Hoffmann, M., Einsle, O., Cavazzini, D., Rossi, G.L., Ubbink, M., Canters, G.W.
Deposit date:2007-01-12
Release date:2007-11-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Inter- and intramolecular electron transfer in modified azurin dimers
Eur.J.Inorg.Chem., 2007, 2007
3W9C
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CRYSTAL STRUCTURE OF THE ELECTRON TRANSFER COMPLEX OF CYTOCHROME P450CAM WITH PUTIDAREDOXIN
Descriptor:Camphor 5-monooxygenase, Putidaredoxin, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Kikui, Y., Hiruma, Y., Hass, M.A., Koteishi, H., Ubbink, M., Nojiri, M.
Deposit date:2013-04-03
Release date:2013-08-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The Structure of the Cytochrome P450cam-Putidaredoxin Complex Determined by Paramagnetic NMR Spectroscopy and Crystallography.
J.Mol.Biol., 2013
5GXG
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HIGH-RESOLUTION CRYSTAL STRUCTURE OF THE ELECTRON TRANSFER COMPLEX OF CYTOCHROME P450CAM WITH PUTIDAREDOXIN
Descriptor:Camphor 5-monooxygenase, Putidaredoxin, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Kikui, Y., Hiruma, Y., Ubbink, M., Nojiri, M.
Deposit date:2016-09-17
Release date:2017-01-18
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Identification of productive and futile encounters in an electron transfer protein complex
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
1TU2
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THE COMPLEX OF NOSTOC CYTOCHROME F AND PLASTOCYANIN DETERMIN WITH PARAMAGNETIC NMR. BASED ON THE STRUCTURES OF CYTOCHROME F AND PLASTOCYANIN, 10 STRUCTURES
Descriptor:Plastocyanin, Apocytochrome f, COPPER (II) ION, ...
Authors:Diaz-Moreno, I., Diaz-Quintana, A., De la Rosa, M.A., Ubbink, M.
Deposit date:2004-06-24
Release date:2005-03-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of the complex between plastocyanin and cytochrome f from the cyanobacterium Nostoc sp. PCC 7119 as determined by paramagnetic NMR. The balance between electrostatic and hydrophobic interactions within the transient complex determines the relative orientation of the two proteins.
J.Biol.Chem., 280, 2005
2BZ7
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OXIDIZED AND REDUCED STRUCTURES OF A MUTANT PLASTOCYANIN OF FERN
Descriptor:PLASTOCYANIN, COPPER (II) ION
Authors:Hulsker, R., Thomassen, E.A.J., Ubbink, M.
Deposit date:2005-08-12
Release date:2006-11-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Protonation of a Histidine Copper Ligand in Fern Plastocyanin.
J.Am.Chem.Soc., 129, 2007
2BZC
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OXIDIZED AND REDUCED STRUCTURES OF A MUTANT PLASTOCYANIN OF FERN
Descriptor:PLASTOCYANIN, COPPER (I) ION
Authors:Hulsker, R., Thomassen, E.A.J., Ubbink, M.
Deposit date:2005-08-15
Release date:2006-11-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Protonation of a Histidine Copper Ligand in Fern Plastocyanin.
J.Am.Chem.Soc., 129, 2007
2JXM
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ENSEMBLE OF TWENTY STRUCTURES OF THE PROCHLOROTHRIX HOLLANDICA PLASTOCYANIN- CYTOCHROME F COMPLEX
Descriptor:Plastocyanin, Cytochrome f, COPPER (II) ION, ...
Authors:Hulsker, R., Baranova, M., Bullerjahn, G., Ubbink, M.
Deposit date:2007-11-22
Release date:2008-02-12
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Dynamics in the transient complex of plastocyanin-cytochrome f from Prochlorothrix hollandica.
J.Am.Chem.Soc., 130, 2008
2KAJ
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NMR STRUCTURE OF GALLIUM SUBSTITUTED FERREDOXIN
Descriptor:Ferredoxin-1, GALLIUM (III) ION
Authors:Xu, X., Ubbink, M., Knaff, D.B.
Deposit date:2008-11-06
Release date:2009-11-10
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural and functional characterization of the ga-substituted ferredoxin from Synechocystis sp. PCC6803, a mimic of the native protein.
Biochemistry, 49, 2010
2M56
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THE STRUCTURE OF THE COMPLEX OF CYTOCHROME P450CAM AND ITS ELECTRON DONOR PUTIDAREDOXIN DETERMINED BY PARAMAGNETIC NMR SPECTROSCOPY
Descriptor:Camphor 5-monooxygenase, Putidaredoxin, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Hiruma, Y., Hass, M.A.S., Ubbink, M.
Deposit date:2013-02-14
Release date:2013-08-21
Method:SOLUTION NMR
Cite:The Structure of the Cytochrome P450cam-Putidaredoxin Complex Determined by Paramagnetic NMR Spectroscopy and Crystallography.
J.Mol.Biol., 2013
2P80
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SOLUTION STRUCTURE OF THE COMPLEX BETWEEN NITRITE REDUCTASE AND PSEUDOAZURIN FROM A. FAECALIS
Descriptor:Copper-containing nitrite reductase, Pseudoazurin, COPPER (II) ION, ...
Authors:Vlasie, M.D., Ubbink, M.
Deposit date:2007-03-21
Release date:2007-12-11
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Low resolution solution structure of the 152 kDa complex between nitrite reductase and pseudoazurin from A. faecalis by paramagnetic NMR.
To be Published
5NJ2
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CRYSTAL STRUCTURE OF BLAC FROM MYCOBACTERIUM TUBERCULOSIS BOUND TO PHOSPHATE
Descriptor:Beta-lactamase, PHOSPHATE ION, ACETATE ION, ...
Authors:Tassoni, R., Pannu, N.S., Ubbink, M.
Deposit date:2017-03-27
Release date:2017-11-15
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (1.19 Å)
Cite:Phosphate Promotes the Recovery of Mycobacterium tuberculosis beta-Lactamase from Clavulanic Acid Inhibition.
Biochemistry, 56, 2017
1TKW
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THE TRANSIENT COMPLEX OF POPLAR PLASTOCYANIN WITH TURNIP CYTOCHROME F DETERMINED WITH PARAMAGNETIC NMR
Descriptor:Plastocyanin A, Cytochrome f, COPPER (II) ION, ...
Authors:Lange, C., Cornvik, T., Diaz-Moreno, I., Ubbink, M.
Deposit date:2004-06-09
Release date:2005-05-24
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The transient complex of poplar plastocyanin with cytochrome f: effects of ionic strength and pH
Biochim.Biophys.Acta, 1707, 2005
2BGV
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X-RAY STRUCTURE OF FERRIC CYTOCHROME C-550 FROM PARACOCCUS VERSUTUS
Descriptor:CYTOCHROME C-550, HEME C
Authors:Worrall, J.A.R., Van Roon, A.-M.M., Ubbink, M., Canters, G.W.
Deposit date:2005-01-05
Release date:2005-05-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The Effect of Replacing the Axial Methionine Ligand with a Lysine Residue in Cytochrome C-550 from Paracoccus Versutus Assessed by X-Ray Crystallography and Unfolding.
FEBS J., 272, 2005
2BH4
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X-RAY STRUCTURE OF THE M100K VARIANT OF FERRIC CYT C-550 FROM PARACOCCUS VERSUTUS DETERMINED AT 100 K.
Descriptor:CYTOCHROME C-550, HEME C
Authors:Worrall, J.A.R., Van Roon, A.-M.M., Ubbink, M., Canters, G.W.
Deposit date:2005-01-07
Release date:2005-05-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:The Effect of Replacing the Axial Methionine Ligand with a Lysine Residue in Cytochrome C-550 from Paracoccus Versutus Assessed by X-Ray Crystallography and Unfolding.
FEBS J., 272, 2005
2BH5
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X-RAY STRUCTURE OF THE M100K VARIANT OF FERRIC CYT C-550 FROM PARACOCCUS VERSUTUS DETERMINED AT 295 K.
Descriptor:CYTOCHROME C-550, HEME C
Authors:Worrall, J.A.R., van Roon, A.-M.M., Ubbink, M., Canters, G.W.
Deposit date:2005-01-07
Release date:2005-05-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:The Effect of Replacing the Axial Methionine Ligand with a Lysine Residue in Cytochrome C-550 from Paracoccus Versutus Assessed by X-Ray Crystallography and Unfolding.
FEBS J., 272, 2005
2GB8
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SOLUTION STRUCTURE OF THE COMPLEX BETWEEN YEAST ISO-1-CYTOCHROME C AND YEAST CYTOCHROME C PEROXIDASE
Descriptor:Cytochrome c peroxidase, Cytochrome c iso-1, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Volkov, A.N., Worrall, J.A.R., Ubbink, M.
Deposit date:2006-03-10
Release date:2006-11-21
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure and dynamics of the complex between cytochrome c and cytochrome c peroxidase determined by paramagnetic NMR.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2JQR
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SOLUTION MODEL OF CROSSLINKED COMPLEX OF CYTOCHROME C AND ADRENODOXIN
Descriptor:Cytochrome c iso-1, Adrenodoxin, mitochondrial, ...
Authors:Xu, X., Reinle, W., Hannemann, F., Konarev, P.V., Svergun, D.I., Bernhardt, R., Ubbink, M.
Deposit date:2007-06-07
Release date:2008-04-22
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Dynamics in a pure encounter complex of two proteins studied by solution scattering and paramagnetic NMR spectroscopy
J.Am.Chem.Soc., 130, 2008
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