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2MXK
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BU of 2mxk by Molmil
Structural features of a 3' splice site influenza A: 19-nt duplex
Descriptor: RNA (5'-R(*GP*CP*AP*GP*GP*CP*CP*CP*A)-3'), RNA (5'-R(*UP*GP*GP*GP*AP*GP*UP*GP*CP*A)-3')
Authors:Turner, D.H, Kennedy, S.D, Chen, J.L.
Deposit date:2015-01-06
Release date:2015-05-06
Last modified:2015-06-17
Method:SOLUTION NMR
Cite:Structural features of a 3' splice site in influenza a.
Biochemistry, 54, 2015
2MXJ
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BU of 2mxj by Molmil
Structural features of a 3' splice site influenza A: 11-nt hairpin
Descriptor: RNA_(11-MER)
Authors:Turner, D.H, Kennedy, S.D, Chen, J.L.
Deposit date:2015-01-06
Release date:2015-05-06
Last modified:2015-06-17
Method:SOLUTION NMR
Cite:Structural features of a 3' splice site in influenza a.
Biochemistry, 54, 2015
2MXL
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BU of 2mxl by Molmil
Structural features of a 3' splice site in influenza A: 39-nt hairpin
Descriptor: RNA (39-MER)
Authors:Turner, D.H, Kennedy, S.D, Chen, J.L.
Deposit date:2015-01-06
Release date:2015-05-06
Last modified:2015-06-17
Method:SOLUTION NMR
Cite:Structural features of a 3' splice site in influenza a.
Biochemistry, 54, 2015
333D
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BU of 333d by Molmil
THE CRYSTAL STRUCTURE OF AN RNA OLIGOMER INCORPORATING TANDEM ADENOSINE-INOSINE MISMATCHES
Descriptor: CALCIUM ION, RNA (5'-R(*CP*GP*CP*AP*IP*GP*CP*G)-3')
Authors:Carter, R.J, Baeyens, K.J, SantaLucia Jr, J, Turner, D.H, Holbrook, S.R.
Deposit date:1997-05-20
Release date:1997-10-16
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.52 Å)
Cite:The crystal structure of an RNA oligomer incorporating tandem adenosine-inosine mismatches.
Nucleic Acids Res., 25, 1997
7RQ5
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BU of 7rq5 by Molmil
Hairpin near 3'-Splice Site of Influenza A Segment 7 Bound to 5-nt Oligonucleotide
Descriptor: RNA (5'-D(*(MU5)P*(MLC)P*(MRC))-R(P*(LG)P*(MU3))-3'), RNA (5'-R(*AP*UP*CP*CP*AP*GP*AP*AP*AP*CP*GP*GP*AP*UP*GP*GP*AP*UP*A)-3')
Authors:Kauffmann, A.D, Kennedy, S.D, Turner, D.H.
Deposit date:2021-08-05
Release date:2022-01-19
Last modified:2022-03-30
Method:SOLUTION NMR
Cite:Nuclear magnetic resonance reveals a two hairpin equilibrium near the 3'-splice site of influenza A segment 7 mRNA that can be shifted by oligonucleotides.
Rna, 28, 2022
6N8I
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BU of 6n8i by Molmil
RNA Duplex containing the internal loop 5'-UUCG/3'-GCUU
Descriptor: RNA (5'-R(*CP*GP*CP*AP*UP*UP*CP*GP*AP*CP*GP*C)-3'), RNA (5'-R(*GP*CP*GP*UP*UP*UP*CP*GP*UP*GP*CP*G)-3')
Authors:Berger, K.D, Kennedy, S.D, Turner, D.H.
Deposit date:2018-11-29
Release date:2019-02-13
Last modified:2020-01-01
Method:SOLUTION NMR
Cite:Nuclear Magnetic Resonance Reveals That GU Base Pairs Flanking Internal Loops Can Adopt Diverse Structures.
Biochemistry, 58, 2019
6N8F
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BU of 6n8f by Molmil
RNA Duplex containing the internal loop 5'-GCUU/3'-UUCG
Descriptor: RNA (5'-R(*CP*GP*CP*AP*GP*CP*UP*UP*AP*CP*GP*C)-3'), RNA (5'-R(*GP*CP*GP*UP*GP*CP*UP*UP*UP*GP*CP*G)-3')
Authors:Berger, K.D, Kennedy, S.D, Turner, D.H.
Deposit date:2018-11-29
Release date:2019-02-13
Last modified:2020-01-01
Method:SOLUTION NMR
Cite:Nuclear Magnetic Resonance Reveals That GU Base Pairs Flanking Internal Loops Can Adopt Diverse Structures.
Biochemistry, 58, 2019
1MV2
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BU of 1mv2 by Molmil
The tandem, Face-to-Face AP Pairs in 5'(rGGCAPGCCU)2
Descriptor: 5'-R(*GP*GP*CP*AP*(P5P)P*GP*CP*CP*U)-3'
Authors:Znosko, B.M, Burkard, M.E, Krugh, T.R, Turner, D.H.
Deposit date:2002-09-24
Release date:2002-12-18
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Molecular Recognition in Purine-Rich Internal Loops: Thermodynamic, Structural, and Dynamic Consequences of Purine for Adenine Substitutions in 5'(rGGCAAGCCU)2
Biochemistry, 41, 2002
1MV6
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BU of 1mv6 by Molmil
The tandem, Sheared PP Pairs in 5'(rGGCPPGCCU)2
Descriptor: 5'-R(*GP*GP*CP*(P5P)P*(P5P)P*GP*CP*CP*U)-3'
Authors:Znosko, B.M, Burkard, M.E, Krugh, T.R, Turner, D.H.
Deposit date:2002-09-24
Release date:2002-12-18
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Molecular Recognition in Purine-Rich Internal Loops: Thermodynamic, Structural, and Dynamic Consequences of Purine for Adenine Substitutions in 5'(rGGCAAGCCU)2
Biochemistry, 41, 2002
1MV1
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BU of 1mv1 by Molmil
The Tandem, Sheared PA Pairs in 5'(rGGCPAGCCU)2
Descriptor: 5'-R(*GP*GP*CP*(P5P)P*AP*GP*CP*CP*U)-3'
Authors:Znosko, B.M, Burkard, M.E, Krugh, T.R, Turner, D.H.
Deposit date:2002-09-24
Release date:2002-12-18
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Molecular Recognition in Purine-Rich Internal Loops: Thermodynamic, Structural, and Dynamic Consequences of Purine for Adenine Substitutions in 5'(rGGCAAGCCU)2
Biochemistry, 41, 2002
1NTT
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BU of 1ntt by Molmil
5'(dCPCPUPCPCPUPUP)3':(rAGGAGGAAA)5', where P=propynyl
Descriptor: 5'-D(*CP*(5PC)P*(PDU)P*(5PC)P*(5PC)P*(PDU)P*(PDU))-3', 5'-R(*AP*AP*AP*GP*GP*AP*GP*GP*A)-3'
Authors:Znosko, B.M, Barnes III, T.W, Krugh, T.R, Turner, D.H.
Deposit date:2003-01-30
Release date:2003-06-10
Last modified:2021-07-28
Method:SOLUTION NMR
Cite:NMR Studies of DNA Single Strands and DNA:RNA Hybrids With and Without 1-Propynylation at C5 of Oligopyrimidines
J.Am.Chem.Soc., 125, 2003
1NTQ
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BU of 1ntq by Molmil
5'(dCCUCCUU)3':3'(rAGGAGGAAA)5'
Descriptor: 5'-D(*CP*CP*UP*CP*CP*UP*U)-3', 5'-R(*AP*AP*AP*GP*GP*AP*GP*GP*A)-3'
Authors:Znosko, B.M, Barnes III, T.W, Krugh, T.R, Turner, D.H.
Deposit date:2003-01-30
Release date:2003-06-10
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:NMR Studies of DNA Single Strands and DNA:RNA Hybrids With and Without 1-Propynylation at C5 of Oligopyrimidines
J.Am.Chem.Soc., 125, 2003
1NTS
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BU of 1nts by Molmil
5'(dCCPUPCPCPUPUP)3':3'(rAGGAGGAAA)5', where P=propynyl
Descriptor: 5'-D(*(5PC)P*(5PC)P*(PDU)P*(5PC)P*(5PC)P*(PDU)P*(PDU))-3', 5'-R(*AP*AP*AP*GP*GP*AP*GP*GP*A)-3'
Authors:Znosko, B.M, Barnes III, T.W, Krugh, T.R, Turner, D.H.
Deposit date:2003-01-30
Release date:2003-06-10
Last modified:2021-07-28
Method:SOLUTION NMR
Cite:NMR Studies of DNA Single Strands and DNA:RNA Hybrids With and Without 1-Propynylation at C5 of Oligopyrimidines
J.Am.Chem.Soc., 125, 2003
1MIS
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BU of 1mis by Molmil
STRUCTURE OF RNA (5'-R(GP*CP*GP*GP*AP*CP*GP*C)-3') ANTI-PARALLEL RNA DUPLEX WITH TANDEM G:A MISMATCHES, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor: RNA (5'-R(*GP*CP*GP*GP*AP*CP*GP*C)-3')
Authors:Wu, M, Turner, D.H.
Deposit date:1997-03-26
Release date:1997-07-07
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution structure of (rGCGGACGC)2 by two-dimensional NMR and the iterative relaxation matrix approach.
Biochemistry, 35, 1996
2DD1
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BU of 2dd1 by Molmil
Three consecutive sheared GA pairs in 5'GGUGGAGGCU/3'PCCAAAGCCG
Descriptor: 5'-R(*GP*CP*CP*GP*AP*AP*AP*CP*CP*(P5P))-3', 5'-R(*GP*GP*UP*GP*GP*AP*GP*GP*CP*U)-3'
Authors:Chen, G, Kennedy, S.D, Krugh, T.R, Turner, D.H.
Deposit date:2006-01-19
Release date:2006-06-13
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:An Alternating Sheared AA Pair and Elements of Stability for a Single Sheared Purine-Purine Pair Flanked by Sheared GA Pairs in RNA
Biochemistry, 45, 2006
2DD3
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BU of 2dd3 by Molmil
An alternating sheared AA pair in 5'GGUGAAGGCU/3'PCCGAAGCCG: II. The minor conformation with A6/A5/A16 stack
Descriptor: 5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P))-3', 5'-R(*GP*GP*UP*GP*AP*AP*GP*GP*CP*U)-3'
Authors:Chen, G, Kennedy, S.D, Krugh, T.R, Turner, D.H.
Deposit date:2006-01-19
Release date:2006-06-13
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:An Alternating Sheared AA Pair and Elements of Stability for a Single Sheared Purine-Purine Pair Flanked by Sheared GA Pairs in RNA
Biochemistry, 45, 2006
2DD2
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BU of 2dd2 by Molmil
An alternating sheared AA pair in 5'GGUGAAGGCU/3'PCCGAAGCCG: I. The major conformation with A6/A15/A16 stack
Descriptor: 5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P))-3', 5'-R(*GP*GP*UP*GP*AP*AP*GP*GP*CP*U)-3'
Authors:Chen, G, Kennedy, S.D, Krugh, T.R, Turner, D.H.
Deposit date:2006-01-19
Release date:2006-06-13
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:An Alternating Sheared AA Pair and Elements of Stability for a Single Sheared Purine-Purine Pair Flanked by Sheared GA Pairs in RNA
Biochemistry, 45, 2006
6N8H
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BU of 6n8h by Molmil
RNA Duplex containing the internal loop 5'-GCAU/3'-UACG
Descriptor: RNA (5'-R(*CP*GP*GP*GP*CP*AP*UP*CP*CP*G)-3')
Authors:Berger, K.D, Kennedy, S.D, Turner, D.H.
Deposit date:2018-11-29
Release date:2019-02-13
Last modified:2020-01-01
Method:SOLUTION NMR
Cite:Nuclear Magnetic Resonance Reveals That GU Base Pairs Flanking Internal Loops Can Adopt Diverse Structures.
Biochemistry, 58, 2019
1MUV
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BU of 1muv by Molmil
Sheared A(anti)-A(anti) Base Pairs in a Destabilizing 2x2 Internal Loop: The NMR Structure of 5'(rGGCAAGCCU)2
Descriptor: 5'-R(*GP*GP*CP*AP*AP*GP*CP*CP*U)-3'
Authors:Znosko, B.M, Burkard, M.E, Schroeder, S.J, Krugh, T.R, Turner, D.H.
Deposit date:2002-09-24
Release date:2002-12-18
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Sheared Aanti-Aanti Base Pairs in a Destabilizing 2x2 Internal Loop: The NMR Structure of 5'(rGGCAAGCCU)2
Biochemistry, 41, 2002
1TUT
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BU of 1tut by Molmil
J4/5 Loop from the Candida albicans and Candida dubliniensis Group I Introns
Descriptor: 5'-R(*GP*AP*GP*GP*AP*AP*GP*GP*CP*GP*A)-3', 5'-R(*UP*CP*GP*UP*UP*AP*AP*UP*CP*UP*C)-3'
Authors:Znosko, B.M, Kennedy, S.D, Wille, P.C, Krugh, T.R, Turner, D.H.
Deposit date:2004-06-25
Release date:2004-12-28
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Structural Features and Thermodynamics of the J4/5 Loop from the Candida albicans and Candida dubliniensis Group I Introns.
Biochemistry, 43, 2004
1F5H
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BU of 1f5h by Molmil
The G7(syn)-G4(anti) structure of r(GCAGGCGUGC)2
Descriptor: 5'-R(*GP*CP*AP*GP*GP*CP*GP*UP*GP*C)-3'
Authors:Burkard, M.E, Turner, D.H.
Deposit date:2000-06-14
Release date:2000-06-26
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:NMR structures of r(GCAGGCGUGC)2 and determinants of stability for single guanosine-guanosine base pairs
Biochemistry, 39, 2000
1F5G
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BU of 1f5g by Molmil
The G7(syn)-G4(anti) structure of r(GCAGGCGUGC)2
Descriptor: 5'-R(*GP*CP*AP*GP*GP*CP*GP*UP*GP*C)-3'
Authors:Burkard, M.E, Turner, D.H.
Deposit date:2000-06-14
Release date:2000-06-26
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:NMR structures of r(GCAGGCGUGC)2 and determinants of stability for single guanosine-guanosine base pairs
Biochemistry, 39, 2000
1XV0
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BU of 1xv0 by Molmil
Solution NMR structure of RNA internal loop with three consecutive sheared GA pairs in 5'GGUGGAGGCU/3'PCCGAAGCCG
Descriptor: 5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P)-3', 5'-R(*GP*GP*UP*GP*GP*AP*GP*GP*CP*U)-3'
Authors:Chen, G, Znosko, B.M, Kennedy, S.D, Krugh, T.R, Turner, D.H.
Deposit date:2004-10-26
Release date:2004-11-09
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution Structure of an RNA Internal Loop with Three Consecutive Sheared GA Pairs
Biochemistry, 44, 2005
1YFV
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BU of 1yfv by Molmil
STRUCTURE OF (5'-R(GP*GP*CP*GP*AP*GP*CP*C)-3')2 BY 2-D NMR, 1 STRUCTURE
Descriptor: RNA (5'-R(GP*GP*CP*GP*AP*GP*CP*C)-3')
Authors:Santalucia Junior, J, Turner, D.H.
Deposit date:1997-05-17
Release date:1997-10-15
Last modified:2021-10-27
Method:SOLUTION NMR
Cite:Structure of (rGGCGAGCC)2 in solution from NMR and restrained molecular dynamics.
Biochemistry, 32, 1993
2L8F
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BU of 2l8f by Molmil
Structure of a 4X4 Nucleotide RNA Internal Loop from an R2 Retrotransposon
Descriptor: RNA (5'-R(*CP*GP*GP*AP*GP*GP*AP*CP*AP*CP*U)-3'), RNA (5'-R(*GP*UP*GP*AP*AP*GP*CP*CP*CP*GP*U)-3')
Authors:Lerman, Y, Kennedy, S.D, Turner, D.H.
Deposit date:2011-01-11
Release date:2011-08-31
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:NMR structure of a 4 x 4 nucleotide RNA internal loop from an R2 retrotransposon: Identification of a three purine-purine sheared pair motif and comparison to MC-SYM predictions.
Rna, 17, 2011

 

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