Author results

1SKT
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SOLUTION STRUCTURE OF APO N-DOMAIN OF TROPONIN C, NMR, 40 STRUCTURES
Descriptor:TROPONIN-C
Authors:Tsuda, S., Miura, A., Gagne, S.M., Spyracopoulos, L., Sykes, B.D.
Deposit date:1998-04-06
Release date:1998-12-09
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Low-temperature-induced structural changes in the Apo regulatory domain of skeletal muscle troponin C.
Biochemistry, 38, 1999
1ZAC
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N-DOMAIN OF TROPONIN C FROM CHICKEN SKELETAL MUSCLE, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor:TROPONIN-C
Authors:Tsuda, S., Miura, A., Gagne, S.M., Spyracopoulos, L., Sykes, B.D.
Deposit date:1998-04-07
Release date:1998-11-11
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Low-temperature-induced structural changes in the Apo regulatory domain of skeletal muscle troponin C.
Biochemistry, 38, 1999
1C89
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NMR STRUCTURE OF INTRAMOLECULAR DIMER ANTIFREEZE PROTEIN RD3, 40 SA STRUCTURES
Descriptor:ANTIFREEZE PROTEIN TYPE III
Authors:Miura, K., Tsuda, S.
Deposit date:2000-05-04
Release date:2001-02-28
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR analysis of type III antifreeze protein intramolecular dimer. Structural basis for enhanced activity.
J.Biol.Chem., 276, 2001
1C8A
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NMR STRUCTURE OF INTRAMOLECULAR DIMER ANTIFREEZE PROTEIN RD3, 40 SA STRUCTURES
Descriptor:PROTEIN (ANTIFREEZE PROTEIN TYPE III)
Authors:Miura, K., Tsuda, S.
Deposit date:2000-05-04
Release date:2001-02-28
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR analysis of type III antifreeze protein intramolecular dimer. Structural basis for enhanced activity.
J.Biol.Chem., 276, 2001
1SQJ
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CRYSTAL STRUCTURE ANALYSIS OF OLIGOXYLOGLUCAN REDUCING-END-SPECIFIC CELLOBIOHYDROLASE (OXG-RCBH)
Descriptor:oligoxyloglucan reducing-end-specific cellobiohydrolase
Authors:Yaoi, K., Kondo, H., Noro, N., Suzuki, M., Tsuda, S., Mitsuishi, Y.
Deposit date:2004-03-19
Release date:2004-07-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Tandem Repeat of a Seven-Bladed beta-Propeller Domain in Oligoxyloglucan Reducing-End-Specific Cellobiohydrolase
Structure, 12, 2004
1DQC
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SOLUTION STRUCTURE OF TACHYCITIN, AN ANTIMICROBIAL PROTEIN WITH CHITIN-BINDING FUNCTION
Descriptor:TACHYCITIN
Authors:Suetake, T., Tsuda, S., Kawabata, S., Miura, K., Kawano, K.
Deposit date:2000-01-04
Release date:2000-09-13
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Chitin-binding proteins in invertebrates and plants comprise a common chitin-binding structural motif.
J.Biol.Chem., 275, 2000
1ISP
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CRYSTAL STRUCTURE OF BACILLUS SUBTILIS LIPASE AT 1.3A RESOLUTION
Descriptor:lipase, GLYCEROL
Authors:Kawasaki, K., Kondo, H., Suzuki, M., Ohgiya, S., Tsuda, S.
Deposit date:2001-12-19
Release date:2002-12-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Alternate conformations observed in catalytic serine of Bacillus subtilis lipase determined at 1.3 A resolution.
Acta Crystallogr.,Sect.D, 58, 2002
5XQN
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CRYSTAL STRUCTURE OF NOTCHED-FIN EELPOUT TYPE III ANTIFREEZE PROTEIN (NFE6, AFP), C2221 FORM.
Descriptor:Ice-structuring protein, SULFATE ION
Authors:Adachi, M., Kondo, H., Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2018-06-06
Method:X-RAY DIFFRACTION (1.19 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XQP
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CRYSTAL STRUCTURE OF NOTCHED-FIN EELPOUT TYPE III ANTIFREEZE PROTEIN (NFE6, AFP), P212121 FORM
Descriptor:Ice-structuring protein, SULFATE ION
Authors:Adachi, M., Shimizu, R., Shibazaki, C., Kondo, H., Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2018-06-06
Method:X-RAY DIFFRACTION (1 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XQR
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CRYSTAL STRUCTURE OF NOTCHED-FIN EELPOUT TYPE III ANTIFREEZE PROTEIN A20V MUTANT (NFE6, AFP), C2221 FORM
Descriptor:Ice-structuring protein, ACETATE ION
Authors:Adachi, M., Shimizu, R., Shibazaki, C., Kondo, H., Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2018-06-06
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XQU
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CRYSTAL STRUCTURE OF NOTCHED-FIN EELPOUT TYPE III ANTIFREEZE PROTEIN A20I MUTANT (NFE6, AFP), P212121 FORM
Descriptor:Ice-structuring protein
Authors:Adachi, M., Shimizu, R., Shibazaki, C., Kondo, H., Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2018-06-06
Method:X-RAY DIFFRACTION (1 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XQV
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CRYSTAL STRUCTURE OF NOTCHED-FIN EELPOUT TYPE III ANTIFREEZE PROTEIN A20L MUTANT (NFE6, AFP), P21 FORM
Descriptor:Ice-structuring protein
Authors:Adachi, M., Shimizu, R., Shibazaki, C., Kondo, H., Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2018-06-06
Method:X-RAY DIFFRACTION (0.97 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XR0
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CRYSTAL STRUCTURE OF NOTCHED-FIN EELPOUT TYPE III ANTIFREEZE PROTEIN A20T MUTANT (NFE6, AFP), P21 FORM
Descriptor:Ice-structuring protein
Authors:Adachi, M., Shimizu, R., Shibazaki, C., Kondo, H., Tsuda, S.
Deposit date:2017-06-07
Release date:2018-05-16
Last modified:2018-06-06
Method:X-RAY DIFFRACTION (0.98 Å)
Cite:Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
1I56
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SOLUTION STRUCTURE OF CA2+-BOUND STATE OF CANINE MILK LYSOZYME
Descriptor:LYSOZYME C
Authors:Kobashigawa, Y., Tsuda, S., Nitta, K.
Deposit date:2001-02-25
Release date:2002-02-27
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of Ca2+-bound state of canine milk lysozyme
To be Published
1IY3
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SOLUTION STRUCTURE OF THE HUMAN LYSOZYME AT 4 DEGREE C
Descriptor:Lysozyme
Authors:Kumeta, H., Miura, A., Kobashigawa, Y., Miura, K., Oka, C., Nitta, K., Nemoto, N., Tsuda, S.
Deposit date:2002-07-15
Release date:2002-07-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Low-temperature-induced structural changes in human lysozyme elucidated by three-dimensional NMR spectroscopy
Biochemistry, 42, 2003
1IY4
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SOLUTION STRUCTURE OF THE HUMAN LYSOZYME AT 35 DEGREE C
Descriptor:Lysozyme
Authors:Kumeta, H., Miura, A., Kobashigawa, Y., Miura, K., Oka, C., Nitta, K., Nemoto, N., Tsuda, S.
Deposit date:2002-07-15
Release date:2002-07-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Low-temperature-induced structural changes in human lysozyme elucidated by three-dimensional NMR spectroscopy
Biochemistry, 42, 2003
2CZQ
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A NOVEL CUTINASE-LIKE PROTEIN FROM CRYPTOCOCCUS SP.
Descriptor:cutinase-like protein, CITRIC ACID, 1,2-ETHANEDIOL
Authors:Masaki, K., Kamini, N.R., Ikeda, H., Iefuji, H., Kondo, H., Suzuki, M., Tsuda, S.
Deposit date:2005-07-14
Release date:2006-07-14
Last modified:2012-06-13
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Crystal structure and enhanced activity of a cutinase-like enzyme from Cryptococcus sp. strain S-2
Proteins, 77, 2009
2D56
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SOLUTION STRUCTURE OF ASABF, ANTIBACTERIAL PEPTIDE ISOLATED FROM A NEMATODE, ASCARIS SUUM
Descriptor:ASABF
Authors:Nakano, M., Aizawa, T., Kamiya, M., Miura, K., Kumaki, Y., Demura, M., Tsuda, S., Kawano, K.
Deposit date:2005-10-28
Release date:2006-11-14
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure and function of ASABFd18c, antibacterial peptide isolated from a nematode, asucaris suum
To be Published
2DCY
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CRYSTAL STRUCTURE OF BACILLUS SUBTILIS FAMILY-11 XYLANASE
Descriptor:Endo-1,4-beta-xylanase A, 1,4-DIETHYLENE DIOXIDE, L(+)-TARTARIC ACID, ...
Authors:Kondo, H., Miyazaki, K., Takenouchi, M., Noro, N., Suzuki, M., Tsuda, S.
Deposit date:2006-01-18
Release date:2006-02-07
Last modified:2019-07-10
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Thermal Stabilization of Bacillus subtilis Family-11 Xylanase by Directed Evolution
J.Biol.Chem., 281, 2006
2DCZ
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THERMAL STABILIZATION OF BACILLUS SUBTILIS FAMILY-11 XYLANASE BY DIRECTED EVOLUTION
Descriptor:Endo-1,4-beta-xylanase A, SULFATE ION, 1,4-DIETHYLENE DIOXIDE
Authors:Kondo, H., Miyazaki, K., Takenouchi, M., Noro, N., Suzuki, M., Tsuda, S.
Deposit date:2006-01-18
Release date:2006-02-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Thermal Stabilization of Bacillus subtilis Family-11 Xylanase by Directed Evolution
J.Biol.Chem., 281, 2006
2LX2
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1H,13C,15N ASSIGNMENTS FOR AN ISOFORM OF THE TYPE III ANTIFREEZE PROTEIN FROM NOTCHED-FIN EELPOUT
Descriptor:Type III antifreeze protein nfeAFP11
Authors:Kumeta, H., Ogura, K., Nishimiya, Y., Miura, A., Inagaki, F., Tsuda, S.
Deposit date:2012-08-12
Release date:2013-07-24
Method:SOLUTION NMR
Cite:NMR structure note: a defective isoform and its activity-improved variant of a type III antifreeze protein from Zoarces elongates Kner
J.Biomol.Nmr, 55, 2013
2LX3
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1H,13C,15N ASSIGNMENTS FOR AN ISOFORM OF THE TYPE III ANTIFREEZE PROTEIN FROM NOTCHED-FIN EELPOUT
Descriptor:Type III antifreeze protein nfeAFP11
Authors:Kumeta, H., Ogura, K., Nishimiya, Y., Miura, A., Inagaki, F., Tsuda, S.
Deposit date:2012-08-12
Release date:2013-07-24
Method:SOLUTION NMR
Cite:NMR structure note: a defective isoform and its activity-improved variant of a type III antifreeze protein from Zoarces elongates Kner
J.Biomol.Nmr, 55, 2013
2ZIB
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CRYSTAL STRUCTURE ANALYSIS OF CALCIUM-INDEPENDENT TYPE II ANTIFREEZE PROTEIN
Descriptor:Type II antifreeze protein, SULFATE ION
Authors:Nishimiya, Y., Sato, R., Kondo, H., Noro, N., Sugimoto, H., Suzuki, M., Tsuda, S.
Deposit date:2008-02-14
Release date:2008-08-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Crystal structure and mutational analysis of Ca2+-independent type II antifreeze protein from longsnout poacher, Brachyopsis rostratus
J.Mol.Biol., 382, 2008
3A0F
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THE CRYSTAL STRUCTURE OF GEOTRICHUM SP. M128 XYLOGLUCANASE
Descriptor:Xyloglucanase
Authors:Yaoi, K., Kondo, H., Hiyoshi, A., Noro, N., Sugimoto, H., Tsuda, S., Miyazaki, K.
Deposit date:2009-03-16
Release date:2009-09-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The crystal structure of a xyloglucan-specific endo-beta-1,4-glucanase from Geotrichum sp. M128 xyloglucanase reveals a key amino acid residue for substrate specificity
Febs J., 276, 2009
3VN3
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FUNGAL ANTIFREEZE PROTEIN EXERTS HYPERACTIVITY BY CONSTRUCTING AN INEQUABLE BETA-HELIX
Descriptor:Antifreeze protein, 1,2-ETHANEDIOL
Authors:Kondo, H., Xiao, N., Hanada, Y., Sugimoto, H., Hoshino, T., Garnham, C.P., Davies, P.L., Tsuda, S.
Deposit date:2011-12-21
Release date:2012-06-06
Last modified:2013-07-17
Method:X-RAY DIFFRACTION (0.95 Å)
Cite:Ice-binding site of snow mold fungus antifreeze protein deviates from structural regularity and high conservation
Proc.Natl.Acad.Sci.USA, 109, 2012
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