Author results

2E3U
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CRYSTAL STRUCTURE ANALYSIS OF DIM2P FROM PYROCOCCUS HORIKOSHII OT3
Descriptor:Hypothetical protein PH1566
Authors:Tanokura, M., Jia, M.Z.
Deposit date:2006-11-29
Release date:2007-10-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of Dim2p: a preribosomal RNA processing factor, from Pyrococcus horikoshii OT3 at 2.30 A
Proteins, 69, 2007
3AEV
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CRYSTAL STRUCTURE OF A/EIF2ALPHA-ADIM2P-RRNA COMPLEX FROM PYROCOCCUS HORIKOSHII OT3
Descriptor:Translation initiation factor 2 subunit alpha, Putative uncharacterized protein PH1566, RNA (5'-R(*GP*GP*AP*UP*CP*AP*CP*CP*UP*CP*C)-3')
Authors:Tanokura, M., Jia, M.Z., Nagata, K.
Deposit date:2010-02-10
Release date:2010-04-21
Last modified:2014-01-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:An archaeal Dim2-like protein, aDim2p, forms a ternary complex with a/eIF2 alpha and the 3' end fragment of 16S rRNA
J.Mol.Biol., 398, 2010
3LQB
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CRYSTAL STRUCTURE OF THE HATCHING ENZYME ZHE1 FROM THE ZEBRAFISH DANIO RERIO
Descriptor:LOC792177 protein, SULFATE ION, ZINC ION, ...
Authors:Tanokura, M., Okada, A., Nagata, K., Yasumasu, S., Ohtsuka, J., Iuchi, I.
Deposit date:2010-02-08
Release date:2010-09-08
Last modified:2014-03-05
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Crystal structure of zebrafish hatching enzyme 1 from the zebrafish Danio rerio
J.Mol.Biol., 402, 2010
1IYY
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NMR STRUCTURE OF GLN25-RIBONUCLEASE T1, 24 STRUCTURES
Descriptor:RIBONUCLEASE T1
Authors:Hatano, K., Kojima, M., Suzuki, E., Tanokura, M., Takahashi, K.
Deposit date:2002-09-12
Release date:2003-10-07
Last modified:2018-07-25
Method:SOLUTION NMR
Cite:Determination of the NMR structure of Gln25-ribonuclease T1.
Biol. Chem., 384, 2003
2EGD
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CRYSTAL STRUCTURE OF HUMAN S100A13 IN THE CA2+-BOUND STATE
Descriptor:Protein S100-A13, CALCIUM ION
Authors:Imai, F.L., Nagata, K., Yonezawa, N., Nakano, M., Tanokura, M.
Deposit date:2007-02-28
Release date:2008-03-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of human S100A13 in the Ca2+-bound state
Acta Crystallogr.,Sect.F, 64, 2008
1VFR
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THE MAJOR NAD(P)H:FMN OXIDOREDUCTASE FROM VIBRIO FISCHERI
Descriptor:NAD(P)H\:FMN OXIDOREDUCTASE, FLAVIN MONONUCLEOTIDE
Authors:Koike, H., Sasaki, H., Kobori, T., Zenno, S., Saigo, K., Murphy, M.E.P., Adman, E.T., Tanokura, M.
Deposit date:1998-01-09
Release date:1999-02-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:1.8 A crystal structure of the major NAD(P)H:FMN oxidoreductase of a bioluminescent bacterium, Vibrio fischeri: overall structure, cofactor and substrate-analog binding, and comparison with related flavoproteins.
J.Mol.Biol., 280, 1998
1ZOV
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CRYSTAL STRUCTURE OF MONOMERIC SARCOSINE OXIDASE FROM BACILLUS SP. NS-129
Descriptor:Monomeric sarcosine oxidase, CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Nagata, K., Sasaki, H., Ohtsuka, J., Hua, M., Okai, M., Kubota, K., Kamo, M., Ito, K., Ichikawa, T., Koyama, Y., Tanokura, M.
Deposit date:2005-05-14
Release date:2006-05-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Crystal structure of monomeric sarcosine oxidase from Bacillus sp. NS-129 reveals multiple conformations at the active-site loop
PROC.JPN.ACAD.,SER.B, 81, 2005
1ION
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THE SEPTUM SITE-DETERMINING PROTEIN MIND COMPLEXED WITH MG-ADP FROM PYROCOCCUS HORIKOSHII OT3
Descriptor:PROBABLE CELL DIVISION INHIBITOR MIND, MAGNESIUM ION, ADENOSINE-5'-DIPHOSPHATE
Authors:Sakai, N., Yao, M., Itou, H., Watanabe, N., Yumoto, F., Tanokura, M., Tanaka, I.
Deposit date:2001-03-21
Release date:2001-09-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The three-dimensional structure of septum site-determining protein MinD from Pyrococcus horikoshii OT3 in complex with Mg-ADP.
Structure, 9, 2001
1IX5
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SOLUTION STRUCTURE OF THE METHANOCOCCUS THERMOLITHOTROPHICUS FKBP
Descriptor:FKBP
Authors:Suzuki, R., Nagata, K., Kawakami, M., Nemoto, N., Furutani, M., Adachi, K., Maruyama, T., Tanokura, M.
Deposit date:2002-06-12
Release date:2003-06-10
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Three-dimensional Solution Structure of an Archaeal FKBP with a Dual Function of Peptidyl Prolyl cis-trans Isomerase and Chaperone-like Activities
J.MOL.BIOL., 328, 2003
1ULI
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BIPHENYL DIOXYGENASE (BPHA1A2) DERIVED FROM RHODOCOCCUS SP. STRAIN RHA1
Descriptor:biphenyl dioxygenase large subunit, biphenyl dioxygenase small subunit, FE (II) ION, ...
Authors:Furusawa, Y., Nagarajan, V., Masai, E., Tanokura, M., Fukuda, M., Senda, T.
Deposit date:2003-09-12
Release date:2004-09-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of the Terminal Oxygenase Component of Biphenyl Dioxygenase Derived from Rhodococcus sp. Strain RHA1
J.Mol.Biol., 342, 2004
1ULJ
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BIPHENYL DIOXYGENASE (BPHA1A2) IN COMPLEX WITH THE SUBSTRATE
Descriptor:biphenyl dioxygenase large subunit, biphenyl dioxygenase small subunit, FE (II) ION, ...
Authors:Furusawa, Y., Nagarajan, V., Masai, E., Tanokura, M., Fukuda, M., Senda, T.
Deposit date:2003-09-12
Release date:2004-09-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of the Terminal Oxygenase Component of Biphenyl Dioxygenase Derived from Rhodococcus sp. Strain RHA1
J.Mol.Biol., 342, 2004
1V3Y
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THE CRYSTAL STRUCTURE OF PEPTIDE DEFORMYLASE FROM THERMUS THERMOPHILUS HB8
Descriptor:Peptide deformylase
Authors:Kamo, M., Kudo, N., Lee, W.C., Ito, K., Motoshim, H., Tanokura, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-11-07
Release date:2004-12-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:The crystal structure of peptide deformylase from Thermus thermophilus HB8
to be published
1V5I
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CRYSTAL STRUCTURE OF SERINE PROTEASE INHIBITOR POIA1 IN COMPLEX WITH SUBTILISIN BPN'
Descriptor:Subtilisin BPN', IA-1=serine proteinase inhibitor, SULFATE ION, ...
Authors:Lee, W.C., Kikkawa, M., Kojima, S., Miura, K., Tanokura, M.
Deposit date:2003-11-24
Release date:2005-03-08
Last modified:2014-11-12
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of serine protease inhibitor POIA1 in complex with subtilisin BPN'
To be Published
1WST
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CRYSTAL STRUCTURE OF MULTIPLE SUBSTRATE AMINOTRANSFERASE (MSAT) FROM THERMOCOCCUS PROFUNDUS
Descriptor:multiple substrate aminotransferase, PYRIDOXAL-5'-PHOSPHATE
Authors:Lee, W.C., Manabe, F., Nemoto, N., Tamakoshi, M., Tanokura, M., Yamagishi, A.
Deposit date:2004-11-10
Release date:2005-10-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of multiple substrate aminotransferase (MsAT) from Thermococcus profundus
To be Published
2D36
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THE CRYSTAL STRUCTURE OF FLAVIN REDUCTASE HPAC
Descriptor:hypothetical NADH-dependent FMN oxidoreductase, FLAVIN MONONUCLEOTIDE
Authors:Okai, M., Kudo, N., Lee, W.C., Kamo, M., Nagata, K., Tanokura, M.
Deposit date:2005-09-26
Release date:2006-05-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of the short-chain flavin reductase HpaC from Sulfolobus tokodaii strain 7 in its three states: NAD(P)(+)(-)free, NAD(+)(-)bound, and NADP(+)(-)bound
Biochemistry, 45, 2006
2D37
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THE CRYSTAL STRUCTURE OF FLAVIN REDUCTASE HPAC COMPLEXED WITH NAD+
Descriptor:hypothetical NADH-dependent FMN oxidoreductase, FLAVIN MONONUCLEOTIDE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Okai, M., Kudo, N., Lee, W.C., Kamo, M., Nagata, K., Tanokura, M.
Deposit date:2005-09-26
Release date:2006-05-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structures of the short-chain flavin reductase HpaC from Sulfolobus tokodaii strain 7 in its three states: NAD(P)(+)(-)free, NAD(+)(-)bound, and NADP(+)(-)bound
Biochemistry, 45, 2006
2D38
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THE CRYSTAL STRUCTURE OF FLAVIN REDUCTASE HPAC COMPLEXED WITH NADP+
Descriptor:hypothetical NADH-dependent FMN oxidoreductase, FLAVIN MONONUCLEOTIDE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Okai, M., Kudo, N., Lee, W.C., Kamo, M., Nagata, K., Tanokura, M.
Deposit date:2005-09-26
Release date:2006-05-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structures of the short-chain flavin reductase HpaC from Sulfolobus tokodaii strain 7 in its three states: NAD(P)(+)(-)free, NAD(+)(-)bound, and NADP(+)(-)bound
Biochemistry, 45, 2006
2D7J
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CRYSTAL STRUCTURE ANALYSIS OF GLUTAMINE AMIDOTRANSFERASE FROM PYROCOCCUS HORIKOSHII OT3
Descriptor:GMP synthase [glutamine-hydrolyzing] subunit A
Authors:Maruoka, S., Lee, W.C., Kamo, M., Kudo, N., Nagata, K., Tanokura, M.
Deposit date:2005-11-21
Release date:2006-11-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Crystal structure of glutamine amidotransferase from Pyrococcus horikoshii OT3
PROC.JPN.ACAD.,SER.B, 81, 2005
2DVY
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CRYSTAL STRUCTURE OF RESTRICTION ENDONUCLEASES PABI
Descriptor:Restriction endonuclease PabI
Authors:Miyazono, K., Watanabe, M., Kamo, M., Sawasaki, T., Nagata, K., Endo, Y., Tanokura, M., Kobayashi, I.
Deposit date:2006-08-01
Release date:2007-05-08
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (3 Å)
Cite:Novel protein fold discovered in the PabI family of restriction enzymes
Nucleic Acids Res., 35, 2007
2GXG
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CRYSTAL STRUCTURE OF EMRR HOMOLOG FROM HYPERTHERMOPHILIC ARCHAEA SULFOLOBUS TOKODAII STRAIN7
Descriptor:146aa long hypothetical transcriptional regulator
Authors:Miyazono, K., Tsujimura, M., Kawarabayasi, Y., Tanokura, M.
Deposit date:2006-05-08
Release date:2007-03-20
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal structure of archaeal homolog of multi drug resistance repressor protein, EmrR, from hyperthermophilic archaea Sulfolobus tokodaii strain7
To be Published
2KSW
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BACKBONE 1H, 13C, AND 15N CHEMICAL SHIFT ASSIGNMENTS FOR ORYCTIN
Descriptor:Oryctin
Authors:Horita, S., Ishibashi, J., Nagata, K., Miyakawa, T., Yamakawa, M., Tanokura, M.
Deposit date:2010-01-14
Release date:2010-07-14
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Isolation, cDNA cloning, and structure-based functional characterization of oryctin, a hemolymph protein from the coconut rhinoceros beetle, Oryctes rhinoceros, as a novel serine protease inhibitor
J.Biol.Chem., 285, 2010
2MK4
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SOLUTION STRUCTURE OF ORF2
Descriptor:Open reading frame 2
Authors:Miyakawa, T., Kobayashi, H., Tashiro, M., Yamanaka, H., Tanokura, M.
Deposit date:2014-01-24
Release date:2015-03-25
Method:SOLUTION NMR
Cite:Structural basis for action of the external chaperone for a propeptide-deficient serine protease from Aeromonas sobria
J.Biol.Chem., 2015
2YYS
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CRYSTAL STRUCTURE OF THE PROLINE IMINOPEPTIDASE-RELATED PROTEIN TTHA1809 FROM THERMUS THERMOPHILUS HB8
Descriptor:Proline iminopeptidase-related protein, GLYCEROL
Authors:Okai, M., Miyauchi, Y., Ebihara, A., Lee, W.C., Nagata, K., Tanokura, M.
Deposit date:2007-05-01
Release date:2008-02-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of the proline iminopeptidase-related protein TTHA1809 from Thermus thermophilus HB8
Proteins, 70, 2008
2Z1N
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CRYSTAL STRUCTURE OF APE0912 FROM AEROPYRUM PERNIX K1
Descriptor:dehydrogenase, SODIUM ION
Authors:Ichimura, T., Yamamura, A., Mimoto, F., Ohtsuka, J., Miyazono, K., Okai, M., Kamo, M., Lee, W.-C., Nagata, K., Tanokura, M.
Deposit date:2007-05-10
Release date:2008-03-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A unique catalytic triad revealed by the crystal structure of APE0912, a short-chain dehydrogenase/reductase family protein from Aeropyrum pernix K1
Proteins, 70, 2008
2ZBC
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CRYSTAL STRUCTURE OF STS042, A STAND-ALONE RAM MODULE PROTEIN, FROM HYPERTHERMOPHILIC ARCHAEON SULFOLOBUS TOKODAII STRAIN7.
Descriptor:83aa long hypothetical transcriptional regulator asnC, ISOLEUCINE
Authors:Miyazono, K., Tsujimura, M., Kawarabayasi, Y., Tanokura, M.
Deposit date:2007-10-19
Release date:2008-03-11
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of STS042, a stand-alone RAM module protein, from hyperthermophilic archaeon Sulfolobus tokodaii strain7
Proteins, 71, 2008