Author results

2ZY6
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CRYSTAL STRUCTURE OF A TRUNCATED TRNA, TPHE39A
Descriptor:phenylalanyl transfer RNA, MAGNESIUM ION, CHLORIDE ION, ...
Authors:Tanaka, I., Yao, M., Tanaka, Y., Kitago, Y., Ymagata, S.
Deposit date:2009-01-14
Release date:2009-06-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Deduced RNA binding mechanism of ThiI based on structural and binding analyses of a minimal RNA ligand
Rna, 15, 2009
1J08
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CRYSTAL STRUCTURE OF GLUTAREDOXIN-LIKE PROTEIN FROM PYROCOCCUS HORIKOSHII
Descriptor:glutaredoxin-like protein
Authors:Tanaka, Y., Tanabe, E., Tsumoto, K., Kumagai, I., Yao, M., Tanaka, I.
Deposit date:2002-11-11
Release date:2003-05-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Protein disulfide isomerase from hyperthermophile as an additives of refolding of an immunoglobulin-folded protein
To be Published
1J2V
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CRYSTAL STRUCTURE OF CUTA1 FROM PYROCOCCUS HORIKOSHII
Descriptor:102AA long hypothetical periplasmic divalent cation tolerance protein CUTA
Authors:Tanaka, Y., Sakai, N., Yasutake, Y., Yao, M., Tsumoto, K., Kumagai, I., Tanaka, I.
Deposit date:2003-01-11
Release date:2004-01-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural implications for heavy metal-induced reversible assembly and aggregation of a protein: the case of Pyrococcus horikoshii CutA.
Febs Lett., 556, 2004
1UD9
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CRYSTAL STRUCTURE OF PROLIFERATING CELL NUCLEAR ANTIGEN (PCNA) HOMOLOG FROM SULFOLOBUS TOKODAII
Descriptor:DNA polymerase sliding clamp A, ZINC ION
Authors:Tanabe, E., Yasutake, Y., Tanaka, Y., Yao, M., Tsumoto, K., Kumagai, I., Tanaka, I.
Deposit date:2003-04-28
Release date:2004-06-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Crystal Structure of Proliferating Cell Nuclear Antigen (PCNA) Homolog From Sulfolobus tokodaii
To be published
1UKU
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CRYSTAL STRUCTURE OF PYROCOCCUS HORIKOSHII CUTA1 COMPLEXED WITH CU2+
Descriptor:periplasmic divalent cation tolerance protein CutA, COPPER (II) ION
Authors:Tanaka, Y., Yasutake, Y., Yao, M., Sakai, N., Tanaka, I., Tsumoto, K., Kumagai, I.
Deposit date:2003-09-01
Release date:2004-01-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural implications for heavy metal-induced reversible assembly and aggregation of a protein: the case of Pyrococcus horikoshii CutA.
Febs Lett., 556, 2004
1UMJ
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CRYSTAL STRUCTURE OF PYROCOCCUS HORIKOSHII CUTA IN THE PRESENCE OF 3M GUANIDINE HYDROCHLORIDE
Descriptor:periplasmic divalent cation tolerance protein CutA, GUANIDINE
Authors:Tanaka, Y., Tsumoto, K., Yasutake, Y., Sakai, N., Yao, M., Tanaka, I., Kumagai, I.
Deposit date:2003-10-02
Release date:2004-10-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural evidence for guanidine-protein side chain interactions: crystal structure of CutA from Pyrococcus horikoshii in 3M guanidine hydrochloride
Biochem.Biophys.Res.Commun., 323, 2004
1VBF
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CRYSTAL STRUCTURE OF PROTEIN L-ISOASPARTATE O-METHYLTRANSFERASE HOMOLOGUE FROM SULFOLOBUS TOKODAII
Descriptor:231aa long hypothetical protein-L-isoaspartate O-methyltransferase
Authors:Tanaka, Y., Tsumoto, K., Yasutake, Y., Umetsu, M., Yao, M., Tanaka, I., Fukada, H., Kumagai, I.
Deposit date:2004-02-25
Release date:2004-08-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:How Oligomerization Contributes to the Thermostability of an Archaeon Protein: PROTEIN L-ISOASPARTYL-O-METHYLTRANSFERASE FROM SULFOLOBUS TOKODAII
J.Biol.Chem., 279, 2004
1WOZ
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CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN ST1454 FROM SULFOLOBUS TOKODAII
Descriptor:177aa long conserved hypothetical protein (ST1454), (20S)-2,5,8,11,14,17-HEXAMETHYL-3,6,9,12,15,18-HEXAOXAHENICOSANE-1,20-DIOL
Authors:Sasaki, T., Tanaka, Y., Yasutake, Y., Yao, M., Tanaka, I., Tsumoto, K., Kumagai, I.
Deposit date:2004-08-27
Release date:2005-10-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Crystal structure of the uncharacterized protein ST1454 from Sulfolobus tokodaii.
To be Published
1WSC
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CRYSTAL STRUCTURE OF ST0229, FUNCTION UNKNOWN PROTEIN FROM SULFOLOBUS TOKODAII
Descriptor:Hypothetical protein ST0229
Authors:Murayama, T., Tanaka, Y., Sasaki, T., Yasutake, Y., Yao, M., Tsumoto, K., Tanaka, I., Kumagai, I.
Deposit date:2004-11-05
Release date:2005-11-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Crystal structure of ST0229, function unknown protein from Sulfolobus tokodaii
To be Published
1WVT
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CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN ST2180 FROM SULFOLOBUS TOKODAII
Descriptor:hypothetical protein ST2180
Authors:Sasaki, T., Tanaka, Y., Yasutake, Y., Tsumoto, K., Tanaka, I., Kumagai, I.
Deposit date:2004-12-27
Release date:2006-01-03
Last modified:2013-05-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Molecular properties of two proteins homologous to PduO-type ATP:cob(I)alamin adenosyltransferase from Sulfolobus tokodaii
Proteins, 68, 2007
2DGD
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CRYSTAL STRUCTURE OF ST0656, A FUNCTION UNKNOWN PROTEIN FROM SULFOLOBUS TOKODAII
Descriptor:223aa long hypothetical arylmalonate decarboxylase, GLYCEROL
Authors:Tanaka, Y., Sasaki, T., Tanabe, E., Yao, M., Tanaka, I., Kumagai, I., Tsumoto, K.
Deposit date:2006-03-10
Release date:2007-03-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of ST0656, a function unknown protein from Sulfolobus tokodaii
To be Published
1J1F
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CRYSTAL STRUCTURE OF THE RNASE MC1 MUTANT N71T IN COMPLEX WITH 5'-GMP
Descriptor:RIBONUCLEASE MC1, GUANOSINE-5'-MONOPHOSPHATE
Authors:Numata, T., Suzuki, A., Kakuta, Y., Kimura, K., Yao, M., Tanaka, I., Yoshida, Y., Ueda, T., Kimura, M.
Deposit date:2002-12-03
Release date:2003-05-20
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structures of the Ribonuclease MC1 Mutants N71T and N71S in Complex with 5'-GMP: Structural Basis for Alterations in Substrate Specificity
Biochemistry, 42, 2003
1J1G
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CRYSTAL STRUCTURE OF THE RNASE MC1 MUTANT N71S IN COMPLEX WITH 5'-GMP
Descriptor:Ribonuclease MC1, GUANOSINE-5'-MONOPHOSPHATE
Authors:Numata, T., Suzuki, A., Kakuta, Y., Kimura, K., Yao, M., Tanaka, I., Yoshida, Y., Ueda, T., Kimura, M.
Deposit date:2002-12-04
Release date:2003-05-20
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structures of the Ribonuclease MC1 Mutants N71T and N71S in Complex with 5'-GMP: Structural Basis for Alterations in Substrate Specificity
Biochemistry, 42, 2003
2E7D
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CRYSTAL STRUCTURE OF A NEAT DOMAIN FROM STAPHYLOCOCCUS AUREUS
Descriptor:Hypothetical protein IsdH, SULFATE ION, ACETATE ION, ...
Authors:Suenaga, A., Tanaka, Y., Yao, M., Kumagai, I., Tanaka, I., Tsumoto, K.
Deposit date:2007-01-09
Release date:2008-01-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for multimeric heme complexation through a specific protein-heme interaction: the case of the third neat domain of IsdH from Staphylococcus aureus
J.Biol.Chem., 283, 2008
3W9Z
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CRYSTAL STRUCTURE OF DUSC
Descriptor:tRNA-dihydrouridine synthase C, FLAVIN MONONUCLEOTIDE
Authors:Chen, M., Yu, J., Tanaka, Y., Tanaka, I., Yao, M.
Deposit date:2013-04-19
Release date:2013-07-31
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of dihydrouridine synthase C (DusC) from Escherichia coli
Acta Crystallogr.,Sect.F, 69, 2013
1DPT
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D-DOPACHROME TAUTOMERASE
Descriptor:D-DOPACHROME TAUTOMERASE
Authors:Sugimoto, H., Taniguchi, M., Nakagawa, A., Tanaka, I.
Deposit date:1998-05-11
Release date:1999-03-30
Last modified:2018-06-06
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Crystal structure of human D-dopachrome tautomerase, a homologue of macrophage migration inhibitory factor, at 1.54 A resolution.
Biochemistry, 38, 1999
1IXL
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CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN PH1136 FROM PYROCOCCUS HORIKOSHII
Descriptor:hypothetical protein PH1136
Authors:Tajika, Y., Sakai, N., Tanaka, Y., Yao, M., Watanabe, N., Tanaka, I.
Deposit date:2002-06-27
Release date:2003-09-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Crystal structure of conserved protein PH1136 from Pyrococcus horikoshii.
Proteins, 55, 2004
1J1W
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CRYSTAL STRUCTURE OF THE MONOMERIC ISOCITRATE DEHYDROGENASE IN COMPLEX WITH NADP+
Descriptor:Isocitrate Dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Yasutake, Y., Watanabe, S., Yao, M., Takada, Y., Fukunaga, N., Tanaka, I.
Deposit date:2002-12-19
Release date:2003-09-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal Structure of the Monomeric Isocitrate Dehydrogenase in the Presence of NADP+
J.Biol.Chem., 278, 2003
1J3A
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CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN L13 FROM PYROCOCCUS HORIKOSHII
Descriptor:50S ribosomal protein L13P
Authors:Nakashima, T., Tanaka, M., Kazama, T., Kawamura, S., Kimura, M., Yao, M., Tanaka, I.
Deposit date:2003-01-21
Release date:2003-02-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of ribosomal protein L13 from hyperthermophilic archaeon Pyrococcus horikoshii
To be Published
1WU7
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CRYSTAL STRUCTURE OF HISTIDYL-TRNA SYNTHETASE FROM THERMOPLASMA ACIDOPHILUM
Descriptor:Histidyl-tRNA synthetase
Authors:Tanaka, Y., Sakai, N., Yao, M., Watanabe, N., Tamura, T., Tanaka, I.
Deposit date:2004-12-01
Release date:2005-12-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of histidyl-tRNA synthetase from Thermoplasma acidophilum
To be Published
1WV3
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CRYSTAL STRUCTURE OF N-TERMINAL DOMAIN OF HYPOTHETICAL PROTEIN SAV0287 FROM STAPHYLOCOCCUS AUREUS
Descriptor:similar to DNA segregation ATPase and related proteins, CHLORIDE ION
Authors:Tanaka, Y., Yasutake, Y., Tanaka, I.
Deposit date:2004-12-10
Release date:2005-12-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure analysis reveals a novel forkhead-associated domain of ESAT-6 secretion system C protein in Staphylococcus aureus.
Proteins, 69, 2007
2D6Y
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CRYSTAL STRUCTURE OF TRANSCRIPTIONAL FACTOR SCO4008 FROM STREPTOMYCES COELICOLOR A3(2)
Descriptor:putative tetR family regulatory protein, L(+)-TARTARIC ACID
Authors:Hayashi, T., Tanaka, Y., Sakai, N., Yao, M., Tamura, T., Tanaka, I.
Deposit date:2005-11-15
Release date:2006-10-31
Last modified:2013-09-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:SCO4008, a Putative TetR Transcriptional Repressor from Streptomyces coelicolor A3(2), Regulates Transcription of sco4007 by Multidrug Recognition.
J.Mol.Biol., 425, 2013
2DG0
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CRYSTAL STRUCTURE OF DRP35, A 35KDA DRUG RESPONSIVE PROTEIN FROM STAPHYLOCOCCUS AUREUS
Descriptor:DrP35
Authors:Tanaka, Y., Ohki, Y., Morikawa, K., Yao, M., Watanabe, N., Ohta, T., Tanaka, I.
Deposit date:2006-03-07
Release date:2006-12-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural and Mutational Analyses of Drp35 from Staphylococcus aureus: A POSSIBLE MECHANISM FOR ITS LACTONASE ACTIVITY
J.Biol.Chem., 282, 2007
2DG1
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CRYSTAL STRUCTURE OF DRP35, A 35KDA DRUG RESPONSIVE PROTEIN FROM STAPHYLOCOCCUS AUREUS, COMPLEXED WITH CA2+
Descriptor:DrP35, CALCIUM ION, GLYCEROL
Authors:Tanaka, Y., Ohki, Y., Morikawa, K., Yao, M., Watanabe, N., Ohta, T., Tanaka, I.
Deposit date:2006-03-07
Release date:2006-12-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Structural and Mutational Analyses of Drp35 from Staphylococcus aureus: A POSSIBLE MECHANISM FOR ITS LACTONASE ACTIVITY
J.Biol.Chem., 282, 2007
2DG6
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CRYSTAL STRUCTURE OF THE PUTATIVE TRANSCRIPTIONAL REGULATOR SCO5550 FROM STREPTOMYCES COELICOLOR A3(2)
Descriptor:putative transcriptional regulator
Authors:Hayashi, T., Tanaka, Y., Sakai, N., Yao, M., Tamura, T., Tanaka, I.
Deposit date:2006-03-08
Release date:2007-03-13
Last modified:2018-03-28
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and genomic DNA analysis of a putative transcription factor SCO5550 from Streptomyces coelicolor A3(2): regulating the expression of gene sco5551 as a transcriptional activator with a novel dimer shape
Biochem. Biophys. Res. Commun., 435, 2013