Author results

3SSI
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PROTEINASE INHIBITOR SSI (STREPTOMYCES SUBTILISIN, INHIBITOR) FROM STREPTOMYCES ALBOGRISEOLUS
Descriptor:STREPTOMYCES SUBTILISIN INHIBITOR
Authors:Suzuki, T., Nonaka, T., Mitsui, Y.
Deposit date:1996-03-01
Release date:1996-08-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural Modulation of the Protein Proteinase Inhibitor Ssi (Streptomyces Subtilisin Inhibitor)
To be Published
4WJ3
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CRYSTAL STRUCTURE OF THE ASPARAGINE TRANSAMIDOSOME FROM PSEUDOMONAS AERUGINOSA
Descriptor:Glutamyl-tRNA(Gln) amidotransferase subunit A, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Glutamyl-tRNA(Gln) amidotransferase subunit C, ...
Authors:Suzuki, T., Nakamura, A., Kato, K., Tanaka, I., Yao, M.
Deposit date:2014-09-29
Release date:2014-12-31
Last modified:2015-01-28
Method:X-RAY DIFFRACTION (3.705 Å)
Cite:Structure of the Pseudomonas aeruginosa transamidosome reveals unique aspects of bacterial tRNA-dependent asparagine biosynthesis
Proc.Natl.Acad.Sci.USA, 112, 2015
4WJ4
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CRYSTAL STRUCTURE OF NON-DISCRIMINATING ASPARTYL-TRNA SYNTHETASE FROM PSEUDOMONAS AERUGINOSA COMPLEXED WITH TRNA(ASN) AND ASPARTIC ACID
Descriptor:Aspartate--tRNA(Asp/Asn) ligase, 76mer-tRNA, ASPARTIC ACID
Authors:Suzuki, T., Nakamura, A., Kato, K., Tanaka, I., Yao, M.
Deposit date:2014-09-29
Release date:2014-12-31
Last modified:2015-01-28
Method:X-RAY DIFFRACTION (3.294 Å)
Cite:Structure of the Pseudomonas aeruginosa transamidosome reveals unique aspects of bacterial tRNA-dependent asparagine biosynthesis
Proc.Natl.Acad.Sci.USA, 112, 2015
5UD5
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CRYSTAL STRUCTURE OF THE TRNA BINDING DOMAIN OF PYRROLYSYL-TRNA SYNTHETASE BOUND TO TRNA(PYL)
Descriptor:Pyrrolysine--tRNA ligase, RNA (70-MER), ZINC ION
Authors:Suzuki, T., Soll, D.
Deposit date:2016-12-23
Release date:2017-10-11
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (2.347 Å)
Cite:Crystal structures reveal an elusive functional domain of pyrrolysyl-tRNA synthetase.
Nat. Chem. Biol., 13, 2017
5V6X
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CRYSTAL STRUCTURE OF THE TRNA BINDING DOMAIN OF PYRROLYSYL-TRNA SYNTHETASE MUTANT (32A NTD) BOUND TO TRNA(PYL)
Descriptor:Pyrrolysine--tRNA ligase, RNA (70-MER), ZINC ION
Authors:Suzuki, T., Soll, D.
Deposit date:2017-03-17
Release date:2017-10-11
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (2.76 Å)
Cite:Crystal structures reveal an elusive functional domain of pyrrolysyl-tRNA synthetase.
Nat. Chem. Biol., 13, 2017
3WLU
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CRYSTAL STRUCTURE OF HUMAN GALECTIN-9 NCRD WITH SELENOLACTOSE
Descriptor:Galectin-9, 2-(trimethylsilyl)ethyl 4-O-beta-D-galactopyranosyl-6-Se-methyl-6-seleno-beta-D-glucopyranoside
Authors:Makyio, H., Suzuki, T., Ando, H., Yamada, Y., Ishida, H., Kiso, M., Wakatsuki, S., Kato, R.
Deposit date:2013-11-14
Release date:2014-11-05
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Expanded potential of seleno-carbohydrates as a molecular tool for X-ray structural determination of a carbohydrate-protein complex with single/multi-wavelength anomalous dispersion phasing
Bioorg.Med.Chem., 22, 2014
5Y5N
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CRYSTAL STRUCTURE OF HUMAN SIRTUIN 2 IN COMPLEX WITH A SELECTIVE INHIBITOR
Descriptor:NAD-dependent protein deacetylase sirtuin-2, ZINC ION, 2-[[3-(2-phenylethoxy)phenyl]amino]benzamide
Authors:Mellini, P., Itoh, Y., Tsumoto, H., Li, Y., Suzuki, M., Tokuda, N., Kakizawa, T., Miura, Y., Takeuchi, J., Lahtela-Kakkonen, M., Suzuki, T.
Deposit date:2017-08-09
Release date:2017-09-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Potent Mechanism-Based Sirtuin-2-Selective Inhibition by an In-Situ-Generated Occupant of the "Selectivity Pocket", Substrate Binding Site, and NAD+ Binding Pocket
CHEM SCI, 8, 2017
1WLE
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CRYSTAL STRUCTURE OF MAMMALIAN MITOCHONDRIAL SERYL-TRNA SYNTHETASE COMPLEXED WITH SERYL-ADENYLATE
Descriptor:Seryl-tRNA synthetase, SERYL ADENYLATE
Authors:Chimnaronk, S., Jeppesen, M.G., Suzuki, T., Nyborg, J., Watanabe, K.
Deposit date:2004-06-25
Release date:2005-09-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Dual-mode recognition of noncanonical tRNAs(Ser) by seryl-tRNA synthetase in mammalian mitochondria
Embo J., 24, 2005
2ZW9
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CRYSTAL STRUCTURE OF TRNA WYBUTOSINE SYNTHESIZING ENZYME TYW4
Descriptor:Leucine carboxyl methyltransferase 2, S-ADENOSYLMETHIONINE
Authors:Suzuki, Y., Noma, A., Suzuki, T., Ishitani, R., Nureki, O.
Deposit date:2008-12-01
Release date:2009-06-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis of tRNA modification with CO2 fixation and methylation by wybutosine synthesizing enzyme TYW4.
Nucleic Acids Res., 37, 2009
2ZWA
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CRYSTAL STRUCTURE OF TRNA WYBUTOSINE SYNTHESIZING ENZYME TYW4
Descriptor:Leucine carboxyl methyltransferase 2, S-ADENOSYL-L-HOMOCYSTEINE, CITRIC ACID, ...
Authors:Suzuki, Y., Noma, A., Suzuki, T., Ishitani, R., Nureki, O.
Deposit date:2008-12-01
Release date:2009-06-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis of tRNA modification with CO2 fixation and methylation by wybutosine synthesizing enzyme TYW4.
Nucleic Acids Res., 37, 2009
2ZZK
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CRYSTAL STRUCTURE OF TRNA WYBUTOSINE SYNTHESIZING ENZYME TYW4
Descriptor:Leucine carboxyl methyltransferase 2, CITRIC ACID, TETRAETHYLENE GLYCOL
Authors:Suzuki, Y., Noma, A., Suzuki, T., Ishitani, R., Nureki, O.
Deposit date:2009-02-17
Release date:2009-06-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.706 Å)
Cite:Structural basis of tRNA modification with CO2 fixation and methylation by wybutosine synthesizing enzyme TYW4.
Nucleic Acids Res., 37, 2009
5GVO
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SOLUTION NMR STRUCTURE OF A NEW LASSO PEPTIDE SPHAERICIN
Descriptor:Uncharacterized protein
Authors:Hemmi, H., Kodani, S., Inoue, Y., Suzuki, M., Dohra, H., Suzuki, T., Ohnishi-Kameyama, M.
Deposit date:2016-09-06
Release date:2017-04-05
Method:SOLUTION NMR
Cite:Sphaericin, a Lasso Peptide from the Rare Actinomycete Planomonospora sphaerica
Eur.J.Org.Chem., 2017
4ZY3
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CRYSTAL STRUCTURE OF KEAP1 IN COMPLEX WITH A SMALL CHEMICAL COMPOUND, K67
Descriptor:Kelch-like ECH-associated protein 1, FORMIC ACID, N,N'-[2-(2-oxopropyl)naphthalene-1,4-diyl]bis(4-ethoxybenzenesulfonamide)
Authors:Fukutomi, T., Iso, T., Suzuki, T., Takagi, K., Mizushima, T., Komatsu, M., Yamamoto, M.
Deposit date:2015-05-21
Release date:2016-05-25
Last modified:2016-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:p62/Sqstm1 promotes malignancy of HCV-positive hepatocellular carcinoma through Nrf2-dependent metabolic reprogramming
Nat Commun, 7, 2016
1WTG
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HUMAN FACTOR VIIA-TISSUE FACTOR COMPLEXED WITH ETHYLSULFONAMIDE-D-BIPHENYLALANINE-GLN-P-AMINOBENZAMIDINE
Descriptor:Coagulation factor VII, Tissue factor, BETA-D-GLUCOSE, ...
Authors:Kadono, S., Sakamoto, S., Kikuchi, Y., Oh-Eda, M., Yabuta, N., Kitazawa, K., Yoshihashi, T., Suzuki, T., Koga, T., Hattori, K., Shiraishi, T., Kodama, M., Haramura, H., Ono, Y., Esaki, T., Sato, H., Watanabe, Y., Itoh, S., Ohta, M., Kozono, T.
Deposit date:2004-11-23
Release date:2005-11-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Novel interactions of large P3 moiety and small P4 moiety in the binding of the peptide mimetic factor VIIa inhibitor
Biochem.Biophys.Res.Commun., 326, 2005
1WUN
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HUMAN FACTOR VIIA-TISSUE FACTOR COMPLEXED WITH ETHYLSULFONAMIDE-D-TRP-GLN-P-AMINOBENZAMIDINE
Descriptor:Coagulation factor VII, Tissue factor, BETA-D-GLUCOSE, ...
Authors:Kadono, S., Sakamoto, A., Kikuchi, Y., Oh-eda, M., Yabuta, N., Yoshihashi, K., Kitazawa, T., Suzuki, T., Koga, T., Hattori, K., Shiraishi, T., Haramura, M., Kodama, H., Ono, Y., Esaki, T., Sato, H., Watanabe, Y., Itoh, S., Ohta, M., Kozono, T.
Deposit date:2004-12-08
Release date:2005-12-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure-based design of P3 moieties in the peptide mimetic factor VIIa inhibitor
Biochem.Biophys.Res.Commun., 327, 2005
1WV7
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HUMAN FACTOR VIIA-TISSUE FACTOR COMPLEXED WITH ETHYLSULFONAMIDE-D-5-PROPOXY-TRP-GLN-P-AMINOBENZAMIDINE
Descriptor:Coagulation factor VII, Tissue factor, BETA-D-GLUCOSE, ...
Authors:Kadono, S., Sakamoto, A., Kikuchi, Y., Oh-eda, M., Yabuta, N., Yoshihashi, K., Kitazawa, T., Suzuki, T., Koga, T., Hattori, K., Shiraishi, T., Haramura, M., Kodama, H., Ono, Y., Esaki, T., Sato, H., Watanabe, Y., Itoh, S., Ohta, M., Kozono, T.
Deposit date:2004-12-11
Release date:2005-12-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure-based design of P3 moieties in the peptide mimetic factor VIIa inhibitor
Biochem.Biophys.Res.Commun., 327, 2005
2E4M
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CRYSTAL STRUCTURE OF HEMAGGLUTININ SUBCOMPONENT COMPLEX (HA-33/HA-17) FROM CLOSTRIDIUM BOTULINUM SEROTYPE D STRAIN 4947
Descriptor:Main hemagglutinin component, HA-17
Authors:Hasegawa, K., Watanabe, T., Suzuki, T., Yamano, A., Niwa, K., Ohyama, T.
Deposit date:2006-12-13
Release date:2007-06-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:A Novel Subunit Structure of Clostridium botulinum Serotype D Toxin Complex with Three Extended Arms
J.Biol.Chem., 282, 2007
2VQE
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MODIFIED URIDINES WITH C5-METHYLENE SUBSTITUENTS AT THE FIRST POSITION OF THE TRNA ANTICODON STABILIZE U-G WOBBLE PAIRING DURING DECODING
Descriptor:16S RRNA, 30S RIBOSOMAL PROTEIN S2, 30S RIBOSOMAL PROTEIN S3, ...
Authors:Kurata, S., Weixlbaumer, A., Ohtsuki, T., Shimazaki, T., Wada, T., Kirino, Y., Takai, K., Watanabe, K., Ramakrishnan, V., Suzuki, T.
Deposit date:2008-03-13
Release date:2008-04-29
Last modified:2018-11-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Modified Uridines with C5-Methylene Substituents at the First Position of the tRNA Anticodon Stabilize U.G Wobble Pairing During Decoding.
J.Biol.Chem., 283, 2008
2VQF
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MODIFIED URIDINES WITH C5-METHYLENE SUBSTITUENTS AT THE FIRST POSITION OF THE TRNA ANTICODON STABILIZE U-G WOBBLE PAIRING DURING DECODING
Descriptor:16S RRNA, 30S RIBOSOMAL PROTEIN S2, 30S RIBOSOMAL PROTEIN S3, ...
Authors:Kurata, S., Weixlbaumer, A., Ohtsuki, T., Shimazaki, T., Wada, T., Kirino, Y., Takai, K., Watanabe, K., Ramakrishnan, V., Suzuki, T.
Deposit date:2008-03-14
Release date:2008-04-29
Last modified:2018-11-21
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Modified Uridines with C5-Methylene Substituents at the First Position of the tRNA Anticodon Stabilize U.G Wobble Pairing During Decoding.
J.Biol.Chem., 283, 2008
3WY9
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CRYSTAL STRUCTURE OF A COMPLEX OF THE ARCHAEAL RIBOSOMAL STALK PROTEIN AP1 AND THE GDP-BOUND ARCHAEAL ELONGATION FACTOR AEF1ALPHA
Descriptor:Elongation factor 1-alpha, 50S ribosomal protein L12, GUANOSINE-5'-DIPHOSPHATE
Authors:Ito, K., Honda, T., Suzuki, T., Miyoshi, T., Murakami, R., Yao, M., Uchiumi, T.
Deposit date:2014-08-22
Release date:2014-12-24
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Molecular insights into the interaction of the ribosomal stalk protein with elongation factor 1 alpha
Nucleic Acids Res., 2014
3WYA
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CRYSTAL STRUCTURE OF GDP-BOUND EF1ALPHA FROM PYROCOCCUS HORIKOSHII
Descriptor:Elongation factor 1-alpha, GUANOSINE-5'-DIPHOSPHATE
Authors:Ito, K., Honda, T., Suzuki, T., Miyoshi, T., Murakami, R., Yao, M., Uchiumi, T.
Deposit date:2014-08-22
Release date:2014-12-24
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Molecular insights into the interaction of the ribosomal stalk protein with elongation factor 1 alpha
Nucleic Acids Res., 2014
5B2H
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CRYSTAL STRUCTURE OF HA33 FROM CLOSTRIDIUM BOTULINUM SEROTYPE C STRAIN YOICHI
Descriptor:HA-33, TRIETHYLENE GLYCOL
Authors:Akiyama, T., Hayashi, S., Matsumoto, T., Hasegawa, K., Yamano, A., Suzuki, T., Niwa, K., Watanabe, T., Sagane, Y., Yajima, S.
Deposit date:2016-01-15
Release date:2016-06-15
Last modified:2016-07-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Conformational divergence in the HA-33/HA-17 trimer of serotype C and D botulinum toxin complex
Biochem.Biophys.Res.Commun., 476, 2016
1WPW
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CRYSTAL STRUCTURE OF IPMDH FROM SULFOLOBUS TOKODAII
Descriptor:3-isopropylmalate dehydrogenase, MAGNESIUM ION
Authors:Hirose, R., Sakurai, M., Suzuki, T., Moriyama, H., Sato, T., Yamagishi, A., Oshima, T., Tanaka, N.
Deposit date:2004-09-14
Release date:2004-10-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure of IPMDH from Sulfolobus tokodaii
To be Published
1WU0
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SOLUTION STRUCTURE OF SUBUNIT C OF F1FO-ATP SYNTHASE FROM THE THERMOPHILIC BACILLUS PS3
Descriptor:ATP synthase C chain
Authors:Nakano, T., Ikegami, T., Suzuki, T., Yoshida, M., Akutsu, H.
Deposit date:2004-11-29
Release date:2005-12-13
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:solution structure TF1Fo subunit c
To be Published
3VUO
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CRYSTAL STRUCTURE OF NONTOXIC NONHEMAGGLUTININ SUBCOMPONENT (NTNHA) FROM CLOSTRIDIUM BOTULINUM SEROTYPE D STRAIN 4947
Descriptor:NTNHA
Authors:Sagane, Y., Miyashita, S.-I., Miyata, K., Matsumoto, T., Inui, K., Hayashi, S., Suzuki, T., Hasegawa, K., Yajima, S., Yamano, A., Niwa, K., Watanabe, T.
Deposit date:2012-07-03
Release date:2012-09-19
Method:X-RAY DIFFRACTION (3.9 Å)
Cite:Small-angle X-ray scattering reveals structural dynamics of the botulinum neurotoxin associating protein, nontoxic nonhemagglutinin
Biochem.Biophys.Res.Commun., 425, 2012