Author results

2GRB
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CRYSTAL STRUCTURE OF AN RNA QUADRUPLEX CONTAINING INOSINE-TETRAD
Descriptor:5'-R(*(U33)P*GP*IP*GP*GP*U)-3', POTASSIUM ION, STRONTIUM ION
Authors:Pan, B., Shi, K., Sundaralingam, M.
Deposit date:2006-04-24
Release date:2006-11-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of an RNA quadruplex containing inosine tetrad: implications for the roles of NH2 group in purine tetrads.
J.Mol.Biol., 363, 2006
2G91
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CRYSTAL STRUCTURE ANALYSIS OF THE AN RNA NONAMER R(GGUGCGC)D(BRC)R(C)
Descriptor:5'-R(*GP*GP*UP*GP*CP*GP*CP*(CBR)P*C-3', MAGNESIUM ION
Authors:Shi, K., Pan, B., Sundaralingam, M.
Deposit date:2006-03-04
Release date:2007-04-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal Structure of an RNA nonamer r(GGUGCGC)d(BrC)r(C) at 1.5 A resolution
To be Published
2BAX
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ATOMIC RESOLUTION STRUCTURE OF THE DOUBLE MUTANT (K53,56M) OF BOVINE PANCREATIC PHOSPHOLIPASE A2
Descriptor:Phospholipase A2, CALCIUM ION, CHLORIDE ION, ...
Authors:Sekar, K., Yogavel, M., Velmurugan, D., Dauter, Z., Dauter, M., Tsai, M.D.
Deposit date:2005-10-15
Release date:2005-10-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Atomic resolution (0.97 A) structure of the triple mutant (K53,56,121M) of bovine pancreatic phospholipase A2.
Acta Crystallogr.,Sect.F, 61, 2005
2B96
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THIRD CALCIUM ION FOUND IN AN INHIBITOR BOUND PHOSPHOLIPASE A2
Descriptor:Phospholipase A2, CALCIUM ION, CHLORIDE ION, ...
Authors:Sekar, K., Velmurugan, D., Yamane, T., Tsai, M.D.
Deposit date:2005-10-11
Release date:2006-03-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Third Calcium ion found in an inhibitor bound phospholipase A2
Acta Crystallogr.,Sect.D, 62, 2006
2AWE
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BASE-TETRAD SWAPPING RESULTS IN DIMERIZATION OF RNA QUADRUPLEXES: IMPLICATIONS FOR FORMATION OF I-MOTIF RNA OCTAPLEX
Descriptor:5'-R(*UP*(BGM)P*GP*UP*GP*U)-3', POTASSIUM ION, STRONTIUM ION
Authors:Pan, B., Shi, K., Sundaralingam, M.
Deposit date:2005-08-31
Release date:2006-02-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Base-tetrad swapping results in dimerization of RNA quadruplexes: implications for formation of the i-motif RNA octaplex.
Proc.Natl.Acad.Sci.Usa, 103, 2006
1R3Z
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CRYSTAL STRUCTURES OF D(GM5CGM5CGCGC) AND D(GCGCGM5CGM5C): EFFECTS OF METHYLATION ON ALTERNATING DNA OCTAMERS
Descriptor:5'-D(*GP*(5CM)P*GP*(5CM)P*GP*CP*GP*C)-3'
Authors:Shi, K., Pan, B., Tippin, D., Sundaralingam, M.
Deposit date:2003-10-03
Release date:2003-12-23
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structures of d(Gm5)CGm5CGCGC) and d(GCGCGm5CGm5C): effects of methylation on alternating DNA octamers.
Acta Crystallogr.,Sect.D, 60, 2004
1R41
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CRYSTAL STRUCTURES OF D(GM5CGM5CGCGC) AND D(GCGCGM5CGM5C): EFFECTS OF METHYLATION ON ALTERNATING DNA OCTAMERS
Descriptor:5'-D(*GP*CP*GP*CP*GP*(5CM)P*GP*(5CM))-3'
Authors:Shi, K., Pan, B., Tippin, D., Sundaralingam, M.
Deposit date:2003-10-03
Release date:2003-12-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structures of d(Gm5)CGm5CGCGC) and d(GCGCGm5CGm5C): effects of methylation on alternating DNA octamers.
Acta Crystallogr.,Sect.D, 60, 2004
1P79
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CRYSTAL STRUCTURE OF A BULGED RNA TETRAPLEX: IMPLICATIONS FOR A NOVEL BINDING SITE IN RNA TETRAPLEX
Descriptor:5'-R(*UP*GP*UP*GP*GP*U)-3', POTASSIUM ION
Authors:Pan, B., Xiong, Y., Shi, K., Sundaralingam, M.
Deposit date:2003-04-30
Release date:2003-11-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Crystal Structure of a Bulged RNA Tetraplex at 1.1 A Resolution: Implications for a Novel Binding Site in RNA Tetraplex
STRUCTURE, 11, 2003
1MDG
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AN ALTERNATING ANTIPARALLEL OCTAPLEX IN AN RNA CRYSTAL STRUCTURE
Descriptor:5'-R(*UP*(BGM)GP*AP*GP*GP*U)-3', SODIUM ION, COBALT HEXAMMINE(III)
Authors:Pan, B.C., Xiong, Y., Shi, K., Sundaralingam, M.
Deposit date:2002-08-07
Release date:2003-08-12
Last modified:2011-09-28
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:An Eight-Stranded Helical Fragment in RNA Crystal Structure: Implications for Tetraplex Interaction
Structure, 11, 2003
1M77
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NEAR ATOMIC RESOLUTION CRYSTAL STRUCTURE OF AN A-DNA DECAMER D(CCCGATCGGG): COBALT HEXAMMINE INTERACTIONS WITH A-DNA
Descriptor:5'-D(*CP*CP*CP*GP*AP*TP*CP*GP*GP*G)-3', COBALT HEXAMMINE(III)
Authors:Ramakrishnan, B., Sekharudu, C., Pan, B.C., Sundaralingam, M.
Deposit date:2002-07-18
Release date:2003-01-07
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Near-atomic resolution crystal structure of an A-DNA decamer d(CCCGATCGGG): cobalt hexammine interaction with A-DNA.
Acta Crystallogr.,Sect.D, 59, 2003
1M6R
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CRYSTAL STRUCTURE OF RGD(CGCGCG) FORMING HEXAMER Z-DNA DUPLEX WITH 5'-(RG) OVERHANG
Descriptor:5'-R(*G)D(*CP*GP*CP*GP*CP*G)-3'
Authors:Pan, B., Sundaralingam, M.
Deposit date:2002-07-17
Release date:2003-02-25
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Crystal structure of rGd(CGCGCG): a Z-DNA hexamer duplex with a 5'-(rG) overhang.
Acta Crystallogr.,Sect.D, 59, 2003
1J6S
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CRYSTAL STRUCTURE OF AN RNA TETRAPLEX (UGAGGU)4 WITH A-TETRADS, G-TETRADS, U-TETRADS AND G-U OCTADS
Descriptor:5'-R(*(BRUP*GP*AP*GP*GP*U)-3', BARIUM ION, SODIUM ION
Authors:Pan, B., Xiong, Y., Shi, K., Deng, J., Sundaralingam, M.
Deposit date:2002-07-10
Release date:2003-08-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of an RNA purine-rich tetraplex containing adenine tetrads: implications for specific binding in RNA tetraplexes
Structure, 11, 2003
1LNT
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CRYSTAL STRUCTURE OF THE HIGHLY CONSERVED RNA INTERNAL LOOP OF SRP
Descriptor:5'-R(*GP*CP*GP*UP*CP*AP*GP*GP*UP*CP*(CBV)P*G)-3', 5'-R(*CP*GP*GP*AP*AP*GP*CP*AP*GP*(CBV)P*GP*C)-3', MAGNESIUM ION, ...
Authors:Deng, J., Xiong, Y., Pan, B., Sundaralingam, M.
Deposit date:2002-05-03
Release date:2003-06-03
Last modified:2011-11-02
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of an RNA dodecamer containing a fragment from SRP domain IV of Escherichia coli.
Acta Crystallogr.,Sect.D, 59, 2003
1L3Z
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CRYSTAL STRUCTURE ANALYSIS OF AN RNA HEPTAMER
Descriptor:5'-R(*GP*UP*AP*UP*AP*CP*A)-3', SODIUM ION
Authors:Shi, K., Pan, B., Sundaralingam, M.
Deposit date:2002-03-04
Release date:2003-02-25
Last modified:2018-03-07
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:The crystal structure of an alternating RNA heptamer r(GUAUACA) forming a six base-paired duplex with 3'-end adenine overhangs
Nucleic Acids Res., 31, 2003
1JZV
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CRYSTAL STRUCTURE OF A BULGED RNA FROM THE SL2 STEM-LOOP OF THE HIV-1 PSI-RNA
Descriptor:5'-R(*GP*GP*CP*GP*AP*CP*(5BU)P*G)-3', 5'-R(*CP*AP*GP*UP*AP*CP*GP*(5IC)P*C)-3', MAGNESIUM ION
Authors:Xiong, Y., Sudarsanakumar, C., Deng, J., Pan, B., Sundaralingam, M.
Deposit date:2001-09-17
Release date:2003-11-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of a Bulged RNA from the SL2 Stem-loop of the HIV-1 psi-RNA
To be Published
1JUX
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1.6A RESOLUTION CRYSTAL STRUCTURES OF THE DNA OCTAMERS D(IUATATAC) AND D(ITITACAC):BINDING OF TWO DISTAMYCIN DRUGS SIDE-BY-SIDE
Descriptor:5'-D(*IP*TP*IP*TP*AP*CP*AP*C)-3', DISTAMYCIN A
Authors:Deng, J., Pan, B., Sundaralingam, M.
Deposit date:2001-08-28
Release date:2004-01-27
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of d(ITITACAC) complexed with distamycin at 1.6 A resolution.
Acta Crystallogr.,Sect.D, 59, 2003
1JS2
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CRYSTAL STRUCTURE OF C77S HIPIP: A SERINE LIGATED [4FE-4S] CLUSTER
Descriptor:high-potential iron protein, IRON/SULFUR CLUSTER
Authors:Mansy, S.S., Xiong, Y., Hemann, C., Hille, R., Sundaralingam, M., Cowan, J.A.
Deposit date:2001-08-16
Release date:2002-01-25
Last modified:2013-04-17
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure and stability studies of C77S HiPIP: a serine ligated [4Fe-4S] cluster.
Biochemistry, 41, 2002
1JO2
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CRYSTAL STRUCTURE OF THE B-DNA HEXAMER (CGATCG).DAUNOMYCIN COMPLEX CONTAINING A RIBOSE AT THE INTERCALATION SITE
Descriptor:5'-D(*C)-R(P*G)-D(P*AP*TP*CP*G)-3', DAUNOMYCIN
Authors:Shi, K., Pan, B., Sundaralingam, M.
Deposit date:2001-07-26
Release date:2003-07-29
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure of a B-form DNA/RNA chimera (dC)(rG)d(ATCG) complexed with daunomycin at 1.5 A resolution.
Acta Crystallogr.,Sect.D, 59, 2003
1J9H
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CRYSTAL STRUCTURE OF AN RNA DUPLEX WITH URIDINE BULGES
Descriptor:5'-R(*GP*UP*GP*UP*CP*GP*(CBR)P*AP*C)-3', CALCIUM ION
Authors:Xiong, Y., Deng, J., Sudarsanakumar, C., Sundaralingam, M.
Deposit date:2001-05-25
Release date:2001-10-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of an RNA duplex r(gugucgcac)(2) with uridine bulges.
J.Mol.Biol., 313, 2001
1J8G
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X-RAY ANALYSIS OF A RNA TETRAPLEX R(UGGGGU)4 AT ULTRA-HIGH RESOLUTION
Descriptor:5'-R(*UP*GP*GP*GP*GP*U)-3', SPERMINE, STRONTIUM ION, ...
Authors:Deng, J., Xiong, Y., Sundaralingam, M.
Deposit date:2001-05-21
Release date:2001-11-23
Last modified:2011-11-16
Method:X-RAY DIFFRACTION (0.61 Å)
Cite:X-ray analysis of an RNA tetraplex (UGGGGU)(4) with divalent Sr(2+) ions at subatomic resolution (0.61 A).
Proc.Natl.Acad.Sci.USA, 98, 2001
1IK5
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CRYSTAL STRUCTURE OF A 14MER RNA CONTAINING DOUBLE UU BULGES IN TWO CRYSTAL FORMS: A NOVEL U*(AU) INTRAMOLECULAR BASE TRIPLE
Descriptor:5'-R(*GP*GP*UP*AP*UP*UP*UP*CP*GP*GP*UP*AP*(CBR)P*C)-3', 5'-R(*GP*GP*UP*AP*UP*UP*UP*UP*GP*GP*UP*AP*(CBR)P*C)-3', MAGNESIUM ION
Authors:Deng, J., Xiong, Y., Sudarsanakumar, C., Shi, K., Sundaralingam, M.
Deposit date:2001-05-02
Release date:2001-11-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of two forms of a 14-mer RNA/DNA chimer duplex with double UU bulges: a novel intramolecular U*(A x U) base triple.
RNA, 7, 2001
1FUF
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CRYSTAL STRUCTURE OF A 14BP RNA OLIGONUCLEOTIDE CONTAINING DOUBLE UU BULGES: A NOVEL INTRAMOLECULAR U*(AU) BASE TRIPLE
Descriptor:(5'-R(*GP*GP*UP*AP*UP*UP*UP*CP*GP*GP*UP*AP*(CBR)P*C)-3'), MAGNESIUM ION, SPERMINE
Authors:Deng, J., Xiong, Y., Sudarsanakumar, C., Shi, K., Sundaralingam, M.
Deposit date:2000-09-15
Release date:2001-11-09
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structures of two forms of a 14-mer RNA/DNA chimer duplex with double UU bulges: a novel intramolecular U*(A x U) base triple.
RNA, 7, 2001
1EVP
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CRYSTAL STRUCTURE OF THE CHIMERICAL DECAMER D(CCACTAGTG)R(G)
Descriptor:DNA/RNA (5'-D(*CP*CP*AP*CP*TP*AP*GP*TP*GP)-R(*G)-3')
Authors:Wahl, M.C., Sundaralingam, M.
Deposit date:2000-04-20
Release date:2000-05-01
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:B-form to A-form conversion by a 3'-terminal ribose: crystal structure of the chimera d(CCACTAGTG)r(G).
Nucleic Acids Res., 28, 2000
1EVV
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CRYSTAL STRUCTURE OF YEAST PHENYLALANINE TRANSFER RNA AT 2.0 A RESOLUTION
Descriptor:PHENYLALANINE TRANSFER RNA, MAGNESIUM ION, SPERMINE
Authors:Jovine, L., Djordjevic, S., Rhodes, D.
Deposit date:2000-04-20
Release date:2000-05-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:The crystal structure of yeast phenylalanine tRNA at 2.0 A resolution: cleavage by Mg(2+) in 15-year old crystals.
J.Mol.Biol., 301, 2000
1EFO
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CRYSTAL STRUCTURE OF AN ADENINE BULGE IN THE RNA CHAIN OF A DNA/RNA HYBRID, D(CTCCTCTTC)/R(GAAGAGAGAG)
Descriptor:DNA (5'-D(*CP*TP*CP*CP*TP*CP*TP*TP*C)-3'), RNA (5'-R(*GP*AP*AP*GP*AP*GP*AP*GP*AP*G)-3')
Authors:Sudarsanakumar, C., Xiong, Y., Sundaralingam, M.
Deposit date:2000-02-09
Release date:2000-05-29
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of an adenine bulge in the RNA chain of a DNA.RNA hybrid, d(CTCCTCTTC).r(gaagagagag).
J.Mol.Biol., 299, 2000