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1BDD
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BU of 1bdd by Molmil
STAPHYLOCOCCUS AUREUS PROTEIN A, IMMUNOGLOBULIN-BINDING B DOMAIN, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor: STAPHYLOCOCCUS AUREUS PROTEIN A
Authors:Gouda, H, Torigoe, H, Saito, A, Sato, M, Arata, Y, Shimada, I.
Deposit date:1996-06-28
Release date:1997-01-11
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of the B domain of staphylococcal protein A: comparisons of the solution and crystal structures.
Biochemistry, 31, 1992
1BDC
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BU of 1bdc by Molmil
STAPHYLOCOCCUS AUREUS PROTEIN A, IMMUNOGLOBULIN-BINDING B DOMAIN, NMR, 10 STRUCTURES
Descriptor: STAPHYLOCOCCUS AUREUS PROTEIN A
Authors:Gouda, H, Torigoe, H, Saito, A, Sato, M, Arata, Y, Shimada, I.
Deposit date:1996-06-28
Release date:1997-01-11
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of the B domain of staphylococcal protein A: comparisons of the solution and crystal structures.
Biochemistry, 31, 1992
1DLF
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BU of 1dlf by Molmil
HIGH RESOLUTION CRYSTAL STRUCTURE OF THE FV FRAGMENT FROM AN ANTI-DANSYL SWITCH VARIANT ANTIBODY IGG2A(S) CRYSTALLIZED AT PH 5.25
Descriptor: ANTI-DANSYL IMMUNOGLOBULIN IGG2A(S), SULFATE ION
Authors:Nakasako, M, Takahashi, H, Shimada, I, Arata, Y.
Deposit date:1998-07-14
Release date:1999-07-26
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:The pH-dependent structural variation of complementarity-determining region H3 in the crystal structures of the Fv fragment from an anti-dansyl monoclonal antibody.
J.Mol.Biol., 291, 1999
2DLF
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BU of 2dlf by Molmil
HIGH RESOLUTION CRYSTAL STRUCTURE OF THE FV FRAGMENT FROM AN ANTI-DANSYL SWITCH VARIANT ANTIBODY IGG2A(S) CRYSTALLIZED AT PH 6.75
Descriptor: PROTEIN (ANTI-DANSYL IMMUNOGLOBULIN IGG2A(S) (HEAVY CHAIN)), PROTEIN (ANTI-DANSYL IMMUNOGLOBULIN IGG2A(S)-KAPPA (LIGHT CHAIN)), SULFATE ION
Authors:Nakasako, M, Takahashi, H, Shimada, I, Arata, Y.
Deposit date:1998-12-17
Release date:1999-12-17
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:The pH-dependent structural variation of complementarity-determining region H3 in the crystal structures of the Fv fragment from an anti-dansyl monoclonal antibody.
J.Mol.Biol., 291, 1999
8HUJ
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BU of 8huj by Molmil
Cryo-EM structure of the J-K-St region of EMCV IRES in complex with eIF4G-HEAT1 and eIF4A
Descriptor: Eukaryotic initiation factor 4A-I, Eukaryotic translation initiation factor 4 gamma 1, IRES RNA (J-K-St), ...
Authors:Suzuki, H, Fujiyoshi, Y, Imai, S, Shimada, I.
Deposit date:2022-12-24
Release date:2023-08-02
Last modified:2023-09-13
Method:ELECTRON MICROSCOPY (3.76 Å)
Cite:Dynamically regulated two-site interaction of viral RNA to capture host translation initiation factor.
Nat Commun, 14, 2023
8J7R
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BU of 8j7r by Molmil
Cryo-EM structure of the J-K-St region of EMCV IRES in complex with eIF4G-HEAT1 and eIF4A (J-K-St/eIF4G focused)
Descriptor: Eukaryotic translation initiation factor 4 gamma 1, IRES RNA (J-K-St), MAGNESIUM ION
Authors:Suzuki, H, Fujiyoshi, Y, Imai, S, Shimada, I.
Deposit date:2023-04-28
Release date:2023-08-02
Last modified:2023-09-13
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Dynamically regulated two-site interaction of viral RNA to capture host translation initiation factor.
Nat Commun, 14, 2023
2I83
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BU of 2i83 by Molmil
hyaluronan-binding domain of CD44 in its ligand-bound form
Descriptor: CD44 antigen
Authors:Takeda, M, Ogino, S, Umemoto, R, Sakakura, M, Kajiwara, M, Sugahara, K.N, Hayasaka, H, Miyasaka, M, Terasawa, H, Shimada, I.
Deposit date:2006-09-01
Release date:2006-11-21
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Ligand-induced Structural Changes of the CD44 Hyaluronan-binding Domain Revealed by NMR
J.Biol.Chem., 281, 2006
2LMK
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BU of 2lmk by Molmil
Solution Structure of Mouse Pheromone ESP1
Descriptor: Exocrine gland-secreting peptide 1
Authors:Yoshinaga, S, Sato, T, Hirakane, M, Esaki, K, Hamaguchi, T, Haga-Yamanaka, S, Tsunoda, M, Kimoto, H, Shimada, I, Touhara, K, Terasawa, H.
Deposit date:2011-12-06
Release date:2013-04-17
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structure of the Mouse Sex Peptide Pheromone ESP1 Reveals a Molecular Basis for Specific Binding to the Class-C G-Protein-Coupled Vomeronasal Receptor
J.Biol.Chem., 2013
7BWI
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BU of 7bwi by Molmil
Solution structure of recombinant APETx1
Descriptor: Kappa-actitoxin-Ael2a
Authors:Matsumura, K, Kobayashi, N, Kurita, J, Nishimura, Y, Yokogawa, M, Imai, S, Shimada, I, Osawa, M.
Deposit date:2020-04-14
Release date:2020-12-23
Last modified:2021-07-14
Method:SOLUTION NMR
Cite:Mechanism of hERG inhibition by gating-modifier toxin, APETx1, deduced by functional characterization.
Bmc Mol Cell Biol, 22, 2021
1D1H
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BU of 1d1h by Molmil
SOLUTION STRUCTURE OF HANATOXIN 1
Descriptor: HANATOXIN TYPE 1
Authors:Takahashi, H, Kim, J.I, Sato, K, Swartz, K.J, Shimada, I.
Deposit date:1999-09-16
Release date:2000-09-20
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Solution structure of hanatoxin1, a gating modifier of voltage-dependent K(+) channels: common surface features of gating modifier toxins.
J.Mol.Biol., 297, 2000
2RQH
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BU of 2rqh by Molmil
Structure of GSPT1/ERF3A-PABC
Descriptor: G1 to S phase transition 1, Polyadenylate-binding protein 1
Authors:Osawa, M, Nakanishi, T, Hosoda, N, Uchida, S, Hoshino, T, Katada, I, Shimada, I.
Deposit date:2009-05-08
Release date:2010-05-26
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Eukaryotic Translation Termination Factor Gspt/Erf3 Recognizes Pabp with Chemical Exchange Using Two Overlapping Motifs
To be Published
2RQG
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BU of 2rqg by Molmil
Structure of GSPT1/ERF3A-PABC
Descriptor: G1 to S phase transition 1, Polyadenylate-binding protein 1
Authors:Osawa, M, Nakanishi, T, Hosoda, N, Uchida, S, Hoshino, T, Katada, I, Shimada, I.
Deposit date:2009-05-08
Release date:2010-05-26
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Eukaryotic Translation Termination Factor Gspt/Erf3 Recognizes Pabp with Chemical Exchange Using Two Overlapping Motifs
To be Published
7EN4
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BU of 7en4 by Molmil
Multi-state structure determination and dynamics analysis elucidate a new ubiquitin-recognition mechanism of yeast ubiquitin C-terminal hydrolase.
Descriptor: Ubiquitin carboxyl-terminal hydrolase YUH1
Authors:Okada, M, Tateishi, Y, Nojiri, E, Mikawa, T, Rajesh, S, Ogasawa, H, Ueda, T, Yagi, H, Kohno, T, Kigawa, T, Shimada, I, Guentert, P, Yutaka, I, Ikeya, T.
Deposit date:2021-04-15
Release date:2022-04-20
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Multi-state structure determination and dynamics analysis elucidate a new ubiquitin-recognition mechanism of yeast ubiquitin C-terminal hydrolase.
To Be Published
1OAV
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BU of 1oav by Molmil
OMEGA-AGATOXIN IVA
Descriptor: OMEGA-AGATOXIN IVA
Authors:Kim, J.I, Konishi, S, Iwai, H, Kohno, T, Gouda, H, Shimada, I, Sato, K, Arata, Y.
Deposit date:1995-06-28
Release date:1995-10-15
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of the calcium channel antagonist omega-agatoxin IVA: consensus molecular folding of calcium channel blockers.
J.Mol.Biol., 250, 1995
1OAW
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BU of 1oaw by Molmil
OMEGA-AGATOXIN IVA
Descriptor: OMEGA-AGATOXIN IVA
Authors:Kim, J.I, Konishi, S, Iwai, H, Kohno, T, Gouda, H, Shimada, I, Sato, K, Arata, Y.
Deposit date:1995-06-28
Release date:1995-10-15
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of the calcium channel antagonist omega-agatoxin IVA: consensus molecular folding of calcium channel blockers.
J.Mol.Biol., 250, 1995
6AGP
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BU of 6agp by Molmil
Structure of Rac1 in the low-affinity state for Mg2+
Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Ras-related C3 botulinum toxin substrate 1
Authors:Toyama, Y, Kontani, K, Katada, T, Shimada, I.
Deposit date:2018-08-13
Release date:2019-03-20
Last modified:2019-11-20
Method:SOLUTION NMR
Cite:Conformational landscape alternations promote oncogenic activities of Ras-related C3 botulinum toxin substrate 1 as revealed by NMR.
Sci Adv, 5, 2019
6KJO
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BU of 6kjo by Molmil
The microtubule-binding domains of yeast cytoplasmic dynein in the low affinity state
Descriptor: Dynein heavy chain, cytoplasmic
Authors:Nishida, N, Komori, Y, Takarada, O, Watanabe, A, Tamura, S, Kubo, S, Shimada, I, Kikkawa, M.
Deposit date:2019-07-22
Release date:2020-03-18
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural basis for two-way communication between dynein and microtubules.
Nat Commun, 11, 2020
6KIQ
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BU of 6kiq by Molmil
Complex of yeast cytoplasmic dynein MTBD-High and MT with DTT
Descriptor: Alpha tubulin, Dynein heavy chain, cytoplasmic, ...
Authors:Komori, Y, Nishida, N, Shimada, I, Kikkawa, M.
Deposit date:2019-07-19
Release date:2020-03-04
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.62 Å)
Cite:Structural basis for two-way communication between dynein and microtubules.
Nat Commun, 11, 2020
6KIO
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BU of 6kio by Molmil
Complex of yeast cytoplasmic dynein MTBD-High and MT without DTT
Descriptor: Dynein heavy chain, cytoplasmic, Tubulin alpha-1A chain, ...
Authors:Komori, Y, Nishida, N, Shimada, I, Kikkawa, M.
Deposit date:2019-07-19
Release date:2020-03-04
Last modified:2020-03-11
Method:ELECTRON MICROSCOPY (3.94 Å)
Cite:Structural basis for two-way communication between dynein and microtubules.
Nat Commun, 11, 2020
6KJN
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BU of 6kjn by Molmil
The microtubule-binding domains of yeast cytoplasmic dynein in the high affinity state
Descriptor: Dynein heavy chain, cytoplasmic
Authors:Nishida, N, Komori, Y, Takarada, O, Watanabe, A, Tamura, S, Kubo, S, Shimada, I, Kikkawa, M.
Deposit date:2019-07-22
Release date:2020-03-18
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural basis for two-way communication between dynein and microtubules.
Nat Commun, 11, 2020
6KR8
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BU of 6kr8 by Molmil
Structure of the beta2 adrenergic receptor in the full agonist bound state
Descriptor: beta 2 adrenergic receptor
Authors:Imai, S, Shimada, I.
Deposit date:2019-08-21
Release date:2020-01-29
Last modified:2020-04-08
Method:SOLUTION NMR
Cite:Structural equilibrium underlying ligand-dependent activation of beta2-adrenoreceptor.
Nat.Chem.Biol., 16, 2020
1IE6
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BU of 1ie6 by Molmil
SOLUTION STRUCTURE OF IMPERATOXIN A
Descriptor: IMPERATOXIN A
Authors:Lee, C.W, Takeuchi, K, Takahashi, H, Sato, K, Shimada, I, Kim, D.H, Kim, J.I.
Deposit date:2001-04-07
Release date:2003-06-10
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Molecular basis of the high-affinity activation of type 1 ryanodine receptors by imperatoxin A.
Biochem.J., 377, 2004
1KOZ
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BU of 1koz by Molmil
SOLUTION STRUCTURE OF OMEGA-GRAMMOTOXIN SIA
Descriptor: Voltage-dependent Channel Inhibitor
Authors:Takeuchi, K, Park, E.J, Lee, C.W, Kim, J.I, Takahashi, H, Swartz, K.J, Shimada, I.
Deposit date:2001-12-25
Release date:2002-08-28
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution structure of omega-grammotoxin SIA, a gating modifier of P/Q and N-type Ca(2+) channel.
J.Mol.Biol., 321, 2002
1L4V
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BU of 1l4v by Molmil
SOLUTION STRUCTURE OF SAPECIN
Descriptor: Sapecin
Authors:Hanzawa, H, Iwai, H, Takeuchi, K, Kuzuhara, T, Komano, H, Kohda, D, Inagaki, F, Natori, S, Arata, Y, Shimada, I.
Deposit date:2002-03-06
Release date:2002-03-27
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:1H nuclear magnetic resonance study of the solution conformation of an antibacterial protein, sapecin.
FEBS Lett., 269, 1990
2MLO
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BU of 2mlo by Molmil
Human CCR2 Membrane-Proximal C-Terminal Region (PRO-C) in a Membrane bound form
Descriptor: MCP-1 receptor
Authors:Esaki, K, Yoshinaga, S, Tsuji, T, Toda, E, Terashima, Y, Saitoh, T, Kohda, D, Kohno, T, Osawa, M, Ueda, T, Shimada, I, Matsushima, K, Terasawa, H.
Deposit date:2014-03-04
Release date:2014-10-08
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural basis for the binding of the membrane-proximal C-terminal region of chemokine receptor CCR2 with the cytosolic regulator FROUNT.
Febs J., 281, 2014

 

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