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3ICP
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BU of 3icp by Molmil
Crystal Structure of UDP-galactose 4-epimerase
Descriptor: NAD-dependent epimerase/dehydratase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, PHOSPHATE ION
Authors:Sakuraba, H, Kawai, T, Yoneda, K, Ohshima, T.
Deposit date:2009-07-18
Release date:2010-07-21
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Crystal Structure of UDP-galactose 4-epimerase
To be Published
3KO8
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BU of 3ko8 by Molmil
Crystal Structure of UDP-galactose 4-epimerase
Descriptor: NAD-dependent epimerase/dehydratase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, PHOSPHATE ION
Authors:Sakuraba, H, Kawai, T, Yoneda, K, Ohshima, T.
Deposit date:2009-11-13
Release date:2010-11-17
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of UDP-galactose 4-epimerase from the hyperthermophilic archaeon Pyrobaculum calidifontis
Arch.Biochem.Biophys., 512, 2011
1VCV
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BU of 1vcv by Molmil
Structure of 2-deoxyribose-5-phosphate aldolase from Pyrobaculum aerophilum
Descriptor: Probable deoxyribose-phosphate aldolase, ZINC ION
Authors:Sakuraba, H, Ohshima, T, Tsuge, H.
Deposit date:2004-03-15
Release date:2005-08-02
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Sequential aldol condensation catalyzed by hyperthermophilic 2-deoxy-d-ribose-5-phosphate aldolase
Appl.Environ.Microbiol., 73, 2007
1WZU
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BU of 1wzu by Molmil
Crystal structure of quinolinate synthase (nadA)
Descriptor: D-MALATE, Quinolinate synthetase A
Authors:Sakuraba, H.
Deposit date:2005-03-09
Release date:2005-06-07
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of the NAD Biosynthetic Enzyme Quinolinate Synthase
J.Biol.Chem., 280, 2005
2ZC0
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BU of 2zc0 by Molmil
Crystal structure of an archaeal alanine:glyoxylate aminotransferase
Descriptor: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, Alanine glyoxylate transaminase, IMIDAZOLE, ...
Authors:Sakuraba, H, Yoneda, K, Tsuge, H, Ohshima, T.
Deposit date:2007-10-31
Release date:2008-06-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of an archaeal alanine:glyoxylate aminotransferase
Acta Crystallogr.,Sect.D, 64, 2008
2ZVR
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BU of 2zvr by Molmil
Crystal structure of a D-tagatose 3-epimerase-related protein from Thermotoga maritima
Descriptor: Uncharacterized protein TM_0416
Authors:Sakuraba, H, Ohshima, T.
Deposit date:2008-11-14
Release date:2009-03-10
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of a D-tagatose 3-epimerase-related protein from the hyperthermophilic bacterium Thermotoga maritima
Acta Crystallogr.,Sect.F, 65, 2009
3A9H
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BU of 3a9h by Molmil
Crystal Structure of PQQ-dependent sugar dehydrogenase holo-form
Descriptor: CALCIUM ION, PYRROLOQUINOLINE QUINONE, Putative uncharacterized protein, ...
Authors:Sakuraba, H, Yokono, K, Yoneda, K, Ohshima, T.
Deposit date:2009-10-26
Release date:2010-09-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Catalytic properties and crystal structure of quinoprotein aldose sugar dehydrogenase from hyperthermophilic archaeon Pyrobaculum aerophilum
Arch.Biochem.Biophys., 502, 2010
3A9G
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BU of 3a9g by Molmil
Crystal Structure of PQQ-dependent sugar dehydrogenase apo-form
Descriptor: CALCIUM ION, Putative uncharacterized protein, alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose
Authors:Sakuraba, H, Yokono, K, Yoneda, K, Ohshima, T.
Deposit date:2009-10-26
Release date:2010-09-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Catalytic properties and crystal structure of quinoprotein aldose sugar dehydrogenase from hyperthermophilic archaeon Pyrobaculum aerophilum
Arch.Biochem.Biophys., 502, 2010
3AW9
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BU of 3aw9 by Molmil
Structure of UDP-galactose 4-epimerase mutant
Descriptor: GALACTOSE-URIDINE-5'-DIPHOSPHATE, NAD-dependent epimerase/dehydratase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Sakuraba, H, Kawai, T, Yoneda, K, Ohshima, T.
Deposit date:2011-03-15
Release date:2012-02-29
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of UDP-galactose 4-epimerase mutant
To be Published
3AW5
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BU of 3aw5 by Molmil
Structure of a multicopper oxidase from the hyperthermophilic archaeon Pyrobaculum aerophilum
Descriptor: ACETATE ION, COPPER (II) ION, CU-O-CU LINKAGE, ...
Authors:Sakuraba, H, Ohshima, T, Yoneda, K.
Deposit date:2011-03-10
Release date:2011-06-08
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of a multicopper oxidase from the hyperthermophilic archaeon Pyrobaculum aerophilum
Acta Crystallogr.,Sect.F, 67, 2011
3AXB
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BU of 3axb by Molmil
Structure of a dye-linked L-proline dehydrogenase from the aerobic hyperthermophilic archaeon, Aeropyrum pernix
Descriptor: 1,2-ETHANEDIOL, FLAVIN-ADENINE DINUCLEOTIDE, PROLINE, ...
Authors:Sakuraba, H, Ohshima, T, Satomura, T, Yoneda, K, Hara, Y.
Deposit date:2011-04-01
Release date:2012-04-04
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Crystal Structure of Novel Dye-linked L-Proline Dehydrogenase from Hyperthermophilic Archaeon Aeropyrum pernix
J.Biol.Chem., 287, 2012
3VQR
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BU of 3vqr by Molmil
Structure of a dye-linked L-proline dehydrogenase mutant from the aerobic hyperthermophilic archaeon, Aeropyrum pernix
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Sakuraba, H, Ohshima, T, Satomura, T, Yoneda, K.
Deposit date:2012-03-29
Release date:2012-04-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Crystal Structure of Novel Dye-linked L-Proline Dehydrogenase from Hyperthermophilic Archaeon Aeropyrum pernix
J.Biol.Chem., 287, 2012
3VTF
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BU of 3vtf by Molmil
Structure of a UDP-glucose dehydrogenase from the hyperthermophilic archaeon Pyrobaculum islandicum
Descriptor: 1,2-ETHANEDIOL, UDP-glucose 6-dehydrogenase, URIDINE-5'-DIPHOSPHATE-GLUCOSE
Authors:Sakuraba, H, Ohshima, T, Yoneda, K.
Deposit date:2012-05-29
Release date:2012-09-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of a UDP-glucose dehydrogenase from the hyperthermophilic archaeon Pyrobaculum islandicum.
Acta Crystallogr.,Sect.F, 68, 2012
1N7K
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BU of 1n7k by Molmil
Unique tetrameric structure of deoxyribose phosphate aldolase from Aeropyrum pernix
Descriptor: deoxyribose-phosphate aldolase
Authors:Tsuge, H, Sakuraba, H, Shimoya, I, Katunuma, N, Ago, H, Miyano, M, Ohshima, T, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-11-15
Release date:2003-03-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:The First Crystal Structure of Archaeal Aldolase. UNIQUE TETRAMERIC STRUCTURE of 2-DEOXY-D-RIBOSE-5-PHOSPHATE ALDOLASE FROM THE HYPERTHERMOPHILIC ARCHAEA Aeropyrum pernix.
J.Biol.Chem., 278, 2003
5GZ6
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BU of 5gz6 by Molmil
Structure of D-amino acid dehydrogenase in complex with NADPH and 2-keto-6-aminocapronic acid
Descriptor: 6-azanyl-2-oxidanylidene-hexanoic acid, ACETATE ION, Meso-diaminopimelate D-dehydrogenase, ...
Authors:Sakuraba, H, Seto, T, Hayashi, J, Akita, H, Yoneda, K, Ohshima, T.
Deposit date:2016-09-26
Release date:2017-04-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Structure-Based Engineering of an Artificially Generated NADP+-Dependent d-Amino Acid Dehydrogenase
Appl. Environ. Microbiol., 83, 2017
5GZ3
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BU of 5gz3 by Molmil
Structure of D-amino acid dehydrogenase in complex with NADP
Descriptor: 1,2-ETHANEDIOL, Meso-diaminopimelate D-dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Sakuraba, H, Seto, T, Hayashi, J, Akita, H, Yoneda, K, Ohshima, T.
Deposit date:2016-09-26
Release date:2017-04-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Structure-Based Engineering of an Artificially Generated NADP+-Dependent d-Amino Acid Dehydrogenase
Appl. Environ. Microbiol., 83, 2017
5GZ1
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BU of 5gz1 by Molmil
Structure of substrate/cofactor-free D-amino acid dehydrogenase
Descriptor: Meso-diaminopimelate D-dehydrogenase
Authors:Sakuraba, H, Seto, T, Hayashi, J, Akita, H, Yoneda, K, Ohshima, T.
Deposit date:2016-09-26
Release date:2017-04-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Structure-Based Engineering of an Artificially Generated NADP+-Dependent d-Amino Acid Dehydrogenase
Appl. Environ. Microbiol., 83, 2017
7VNT
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BU of 7vnt by Molmil
Structure of aminotransferase-substrate complex
Descriptor: 1,2-ETHANEDIOL, 454aa long hypothetical 4-aminobutyrate aminotransferase, GLYCEROL, ...
Authors:Sakuraba, H, Ohshida, T, Ohshima, T.
Deposit date:2021-10-12
Release date:2022-03-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Crystal structure of a novel type of ornithine delta-aminotransferase from the hyperthermophilic archaeon Pyrococcus horikoshii.
Int.J.Biol.Macromol., 208, 2022
7VNO
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BU of 7vno by Molmil
Structure of aminotransferase
Descriptor: 1,2-ETHANEDIOL, 454aa long hypothetical 4-aminobutyrate aminotransferase, GLYCEROL, ...
Authors:Sakuraba, H, Ohshida, T, Ohshima, T.
Deposit date:2021-10-11
Release date:2022-03-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of a novel type of ornithine delta-aminotransferase from the hyperthermophilic archaeon Pyrococcus horikoshii.
Int.J.Biol.Macromol., 208, 2022
7VO1
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BU of 7vo1 by Molmil
Structure of aminotransferase-substrate complex
Descriptor: 454aa long hypothetical 4-aminobutyrate aminotransferase, N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-glutamic acid
Authors:Sakuraba, H, Ohshida, T, Ohshima, T.
Deposit date:2021-10-12
Release date:2022-03-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.99 Å)
Cite:Crystal structure of a novel type of ornithine delta-aminotransferase from the hyperthermophilic archaeon Pyrococcus horikoshii.
Int.J.Biol.Macromol., 208, 2022
8HYE
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BU of 8hye by Molmil
Structure of amino acid dehydrogenase-2752 with ligand
Descriptor: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Alanine dehydrogenase, ...
Authors:Sakuraba, H, Ohshima, T.
Deposit date:2023-01-06
Release date:2023-04-05
Last modified:2023-04-12
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Two different alanine dehydrogenases from Geobacillus kaustophilus: Their biochemical characteristics and differential expression in vegetative cells and spores.
Biochim Biophys Acta Proteins Proteom, 1871, 2023
8HYH
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BU of 8hyh by Molmil
Structure of amino acid dehydrogenase3448
Descriptor: 1,2-ETHANEDIOL, Alanine dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Sakuraba, H, Ohshima, T.
Deposit date:2023-01-06
Release date:2023-04-05
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Two different alanine dehydrogenases from Geobacillus kaustophilus: Their biochemical characteristics and differential expression in vegetative cells and spores.
Biochim Biophys Acta Proteins Proteom, 1871, 2023
8J1G
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BU of 8j1g by Molmil
Structure of amino acid dehydrogenase in complex with NADPH
Descriptor: 1,2-ETHANEDIOL, ARGININE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Sakuraba, H, Ohshima, T.
Deposit date:2023-04-12
Release date:2023-08-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:First crystal structure of an NADP + -dependent l-arginine dehydrogenase belonging to the mu-crystallin family.
Int.J.Biol.Macromol., 249, 2023
8J1C
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BU of 8j1c by Molmil
Structure of amino acid dehydrogenase in complex with NADP
Descriptor: 1,2-ETHANEDIOL, IMIDAZOLE, LYSINE, ...
Authors:Sakuraba, H, Ohshima, T.
Deposit date:2023-04-12
Release date:2023-08-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:First crystal structure of an NADP + -dependent l-arginine dehydrogenase belonging to the mu-crystallin family.
Int.J.Biol.Macromol., 249, 2023
4XB2
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BU of 4xb2 by Molmil
Hyperthermophilic archaeal homoserine dehydrogenase mutant in complex with NADPH
Descriptor: 319aa long hypothetical homoserine dehydrogenase, L-HOMOSERINE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Sakuraba, H, Inoue, S, Yoneda, K, Ohshima, T.
Deposit date:2014-12-16
Release date:2015-07-15
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:Crystal Structures of a Hyperthermophilic Archaeal Homoserine Dehydrogenase Suggest a Novel Cofactor Binding Mode for Oxidoreductases.
Sci Rep, 5, 2015

 

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PDB entries from 2024-03-27

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