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7Z9L
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BU of 7z9l by Molmil
Phen-DC3 intercalation causes hybrid-to-antiparallel transformation of human telomeric DNA G-quadruplex
Descriptor: DNA (5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3'), N2,N9-bis(1-methylquinolin-3-yl)-1,10-phenanthroline-2,9-dicarboxamide
Authors:Ghosh, A, Trajkovski, M, Teulade-Fichou, M.P, Gabelica, V, Plavec, J.
Deposit date:2022-03-21
Release date:2022-08-31
Last modified:2022-10-05
Method:SOLUTION NMR
Cite:Phen-DC 3 Induces Refolding of Human Telomeric DNA into a Chair-Type Antiparallel G-Quadruplex through Ligand Intercalation.
Angew.Chem.Int.Ed.Engl., 61, 2022
7QA9
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BU of 7qa9 by Molmil
10bp DNA/DNA duplex
Descriptor: DNA (5'-D(*CP*CP*AP*TP*TP*AP*TP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*TP*GP*G)-3')
Authors:Li, Q, Trajkovski, M, Fan, C, Chen, J, Zhou, Y, Lu, K, Li, H, Su, X, Xi, Z, Plavec, J, Zhou, C.
Deposit date:2021-11-16
Release date:2022-11-16
Last modified:2022-11-23
Method:SOLUTION NMR
Cite:4'-SCF 3 -Labeling Constitutes a Sensitive 19 F NMR Probe for Characterization of Interactions in the Minor Groove of DNA.
Angew.Chem.Int.Ed.Engl., 61, 2022
7W0V
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BU of 7w0v by Molmil
C4'-SCF3-DT modifeid DNA-DNA duplex
Descriptor: DNA (5'-D(*CP*CP*AP*TP*(DSW)P*AP*TP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*TP*GP*G)-3')
Authors:Li, Q, Trajkovski, M, Fan, C, Chen, J, Zhou, Y, Lu, K, Li, H, Su, X, Xi, Z, Plavec, J, Zhou, C.
Deposit date:2021-11-18
Release date:2022-11-16
Last modified:2022-11-30
Method:SOLUTION NMR
Cite:4'-SCF 3 -Labeling Constitutes a Sensitive 19 F NMR Probe for Characterization of Interactions in the Minor Groove of DNA.
Angew.Chem.Int.Ed.Engl., 61, 2022
8PMB
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BU of 8pmb by Molmil
Minimal I-motif comprising three cytosine-cytosine+ base-pairs
Descriptor: minimal I-motif C21T333
Authors:Ghezzo, M, Trajkovski, M, Plavec, J, Sissi, C.
Deposit date:2023-06-28
Release date:2023-09-13
Last modified:2023-10-18
Method:SOLUTION NMR
Cite:A Screening Protocol for Exploring Loop Length Requirements for the Formation of a Three Cytosine-Cytosine + Base-Paired i-Motif.
Angew.Chem.Int.Ed.Engl., 62, 2023
8Q5Q
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d(ATTTC)3 dimeric structure
Descriptor: DNA (5'-D(*AP*TP*TP*TP*(DNR)P*AP*TP*TP*TP*CP*AP*TP*TP*TP*C)-3')
Authors:Trajkovski, M, Pastore, A, Plavec, J.
Deposit date:2023-08-09
Release date:2024-02-07
Last modified:2024-03-06
Method:SOLUTION NMR
Cite:Dimeric structures of DNA ATTTC repeats promoted by divalent cations.
Nucleic Acids Res., 52, 2024
6R8E
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BU of 6r8e by Molmil
SC14 G-hairpin
Descriptor: DNA (5'-D(*GP*TP*GP*TP*GP*TP*GP*GP*GP*TP*GP*TP*GP*T)-3')
Authors:Lenarcic Zivkovic, M, Trantirek, L, Plavec, J.
Deposit date:2019-04-01
Release date:2021-02-03
Last modified:2021-08-18
Method:SOLUTION NMR
Cite:Insight into formation propensity of pseudocircular DNA G-hairpins.
Nucleic Acids Res., 49, 2021
7NWD
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BU of 7nwd by Molmil
Three-quartet c-kit2 G-quadruplex stabilized by a pyrene conjugate
Descriptor: POTASSIUM ION, c-kit2_py1
Authors:Peterkova, K, Durnik, I, Marek, R, Plavec, J, Podbevsek, P.
Deposit date:2021-03-16
Release date:2021-08-04
Last modified:2021-10-06
Method:SOLUTION NMR
Cite:c-kit2 G-quadruplex stabilized via a covalent probe: exploring G-quartet asymmetry.
Nucleic Acids Res., 49, 2021
1LVS
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BU of 1lvs by Molmil
THE SOLUTION STRUCTURE OF D(G4T4G3)2
Descriptor: 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*G)-3'
Authors:Crnugelj, M, Hud, N.V, Plavec, J.
Deposit date:2002-05-29
Release date:2002-07-24
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:The solution structure of d(G(4)T(4)G(3))(2): a bimolecular G-quadruplex with a novel fold.
J.Mol.Biol., 320, 2002
1U64
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BU of 1u64 by Molmil
The Solution Structure of d(G3T4G4)2
Descriptor: 5'-D(*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3'
Authors:Sket, P, Crnugelj, M, Plavec, J.
Deposit date:2004-07-29
Release date:2004-10-26
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:d(G3T4G4) forms unusual dimeric G-quadruplex structure with the same general fold in the presence of K+, Na+ or NH4+ ions.
Bioorg.Med.Chem., 12, 2004
6ZRM
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BU of 6zrm by Molmil
G-quadruplex with a G-A bulge
Descriptor: DNA (5'-D(*TP*GP*GP*GP*AP*GP*GP*GP*AP*GP*CP*GP*GP*GP*AP*GP*TP*GP*GP*G)-3')
Authors:Lenarcic Zivkovic, M, Plavec, J.
Deposit date:2020-07-13
Release date:2021-05-26
Method:SOLUTION NMR
Cite:Structure of a DNA G-Quadruplex Related to Osteoporosis with a G-A Bulge Forming a Pseudo-loop .
Molecules, 25, 2020
1XV6
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BU of 1xv6 by Molmil
The solution structure of 2',5'-linked 3'-O-(2-methoxyethyl)-RNA hairpin
Descriptor: 5'-R(*(C2L)P*(G2L)P*(C2L)P*(G2L)P*(A2L)P*(A2L)P*(U2L)P*(U2L)P*(C2L)P*(G2L)P*(C2L)P*(G2L))-2'
Authors:Plevnik, M, Gdaniec, Z, Plavec, J.
Deposit date:2004-10-27
Release date:2005-04-05
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution structure of a modified 2',5'-linked RNA hairpin involved in an equilibrium with duplex
Nucleic Acids Res., 33, 2005
6GIR
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BU of 6gir by Molmil
Arabidopsis thaliana cytosolic seryl-tRNA synthetase
Descriptor: Serine--tRNA ligase, cytoplasmic
Authors:Kekez, I, Kekez, M, Rokov-Plavec, J, Matkovic-Calogovic, D.
Deposit date:2018-05-15
Release date:2019-01-02
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.343 Å)
Cite:Arabidopsis seryl-tRNA synthetase: the first crystal structure and novel protein interactor of plant aminoacyl-tRNA synthetase.
FEBS J., 286, 2019
7A3Y
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BU of 7a3y by Molmil
RNA duplex with a cytosine bulge in complex with berberine
Descriptor: BERBERINE, RNA-A chain A, RNA-A chain B
Authors:Podbevsek, P, Plavec, J.
Deposit date:2020-08-19
Release date:2021-03-10
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Interaction between berberine and RNA for the exploration of phytochemicals role
Nucleic Acids Res., 2021
6GZN
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BU of 6gzn by Molmil
Adenine-driven structural switch from two- to three-quartet DNA G-quadruplex
Descriptor: DNA (5'-D(*GP*GP*GP*TP*AP*GP*GP*GP*AP*GP*CP*GP*GP*GP*AP*GP*AP*GP*GP*G)-3')
Authors:Lenarcic Zivkovic, M, Rozman, J, Plavec, J.
Deposit date:2018-07-04
Release date:2018-09-26
Last modified:2019-05-08
Method:SOLUTION NMR
Cite:Adenine-Driven Structural Switch from a Two- to Three-Quartet DNA G-Quadruplex.
Angew. Chem. Int. Ed. Engl., 57, 2018
6ZX6
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BU of 6zx6 by Molmil
Antiparallel basket-type G-quadruplex DNA structure formed in human Bcl-2 promoter containing 8-oxoG
Descriptor: bcl2ex-oxoG19
Authors:Bielskute, S, Plavec, J, Podbevsek, P.
Deposit date:2020-07-29
Release date:2021-03-10
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Oxidative lesions modulate G-quadruplex stability and structure in the human BCL2 promoter.
Nucleic Acids Res., 49, 2021
6ZX7
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BU of 6zx7 by Molmil
Antiparallel basket-type G-quadruplex DNA structure formed in human Bcl-2 promoter
Descriptor: bcl2ex
Authors:Bielskute, S, Plavec, J, Podbevsek, P.
Deposit date:2020-07-29
Release date:2021-03-10
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Oxidative lesions modulate G-quadruplex stability and structure in the human BCL2 promoter.
Nucleic Acids Res., 49, 2021
6SX6
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BU of 6sx6 by Molmil
Guanine-rich oligonucleotide with 5'-GC end form G-quadruplex with A(GGGG)A hexad, GCGC- and G-quartets and two symmetric GG and AA base pairs
Descriptor: GCn
Authors:Pavc, D, Wang, B, Spindler, L, Drevensek-Olenik, I, Plavec, J, Sket, P.
Deposit date:2019-09-25
Release date:2020-07-22
Method:SOLUTION NMR
Cite:GC ends control topology of DNA G-quadruplexes and their cation-dependent assembly.
Nucleic Acids Res., 48, 2020
6SYK
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BU of 6syk by Molmil
Guanine-rich oligonucleotide with 5'- and 3'-GC ends form G-quadruplex with A(GGGG)A hexad, GCGC- and G-quartets and two symmetric GG and AA base pair
Descriptor: GCnCG
Authors:Pavc, D, Wang, B, Spindler, L, Drevensek-Olenik, I, Plavec, J, Sket, P.
Deposit date:2019-09-30
Release date:2020-07-29
Method:SOLUTION NMR
Cite:GC ends control topology of DNA G-quadruplexes and their cation-dependent assembly.
Nucleic Acids Res., 48, 2020
6SX3
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BU of 6sx3 by Molmil
Intercalation of heterocyclic ligand between quartets in G-rich tetrahelical structure
Descriptor: VK2, ~{N}2,~{N}6-bis(1-methylquinolin-1-ium-3-yl)pyridine-2,6-dicarboxamide
Authors:Kotar, A, Kocman, V, Plavec, J.
Deposit date:2019-09-24
Release date:2019-12-11
Last modified:2020-02-05
Method:SOLUTION NMR
Cite:Intercalation of a Heterocyclic Ligand between Quartets in a G-Rich Tetrahelical Structure.
Chemistry, 26, 2020
6TR2
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BU of 6tr2 by Molmil
Pre-folded structures govern folding pathways of human telomeric G-quadruplexes
Descriptor: DNA (5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3')
Authors:Wang, B, Frelih, T, Plavec, J, Sket, P.
Deposit date:2019-12-17
Release date:2020-01-01
Last modified:2020-07-15
Method:SOLUTION NMR
Cite:Pre-folded structures govern folding pathways of human telomeric G-quadruplexes.
Nucleic Acids Res., 48, 2020
6IA0
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BU of 6ia0 by Molmil
Human telomeric G-quadruplex with 8-oxo-G substitution in the central G-quartet
Descriptor: hTel-oxoG10
Authors:Bielskute, S, Plavec, J, Podbevsek, P.
Deposit date:2018-11-26
Release date:2019-01-30
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Impact of Oxidative Lesions on the Human Telomeric G-Quadruplex.
J. Am. Chem. Soc., 141, 2019
6IA4
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BU of 6ia4 by Molmil
Human telomeric G-quadruplex with 8-oxo-G substitution in the outer G-quartet
Descriptor: hTel-oxoG21
Authors:Bielskute, S, Plavec, J, Podbevsek, P.
Deposit date:2018-11-26
Release date:2019-01-30
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Impact of Oxidative Lesions on the Human Telomeric G-Quadruplex.
J. Am. Chem. Soc., 141, 2019
5M1W
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BU of 5m1w by Molmil
Structure of a stable G-hairpin
Descriptor: DNA (5'-D(*GP*TP*GP*TP*GP*GP*GP*TP*GP*TP*G)-3')
Authors:Gajarsky, M, Zivkovic, M.L, Stadlbauer, P, Pagano, B, Fiala, R, Amato, J, Tomaska, L, Sponer, J, Plavec, J, Trantirek, L.
Deposit date:2016-10-11
Release date:2017-03-01
Last modified:2019-05-08
Method:SOLUTION NMR
Cite:Structure of a Stable G-Hairpin.
J. Am. Chem. Soc., 139, 2017
5OPH
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BU of 5oph by Molmil
G-quadruplex structure of DNA oligonucleotide containing GGGGCC repeats linked to ALS and FTD
Descriptor: DNA (5'-D(*GP*GP*GP*GP*CP*CP*GP*GP*GP*GP*CP*CP*GP*GP*GP*GP*CP*CP*GP*GP*(BGM)P*G)-3')
Authors:Brcic, J, Plavec, J.
Deposit date:2017-08-09
Release date:2018-08-29
Last modified:2019-06-19
Method:SOLUTION NMR
Cite:NMR structure of a G-quadruplex formed by four d(G4C2) repeats: insights into structural polymorphism.
Nucleic Acids Res., 46, 2018
6FNV
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Solution structure of mule deer prion protein with polymorphism S138
Descriptor: Major prion protein
Authors:Slapsak, U, Ilc, G, Plavec, J.
Deposit date:2018-02-05
Release date:2019-08-28
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structure of mule deer prion protein with polymorphism S138
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