Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
2V6Z
DownloadVisualize
BU of 2v6z by Molmil
Solution Structure of Amino-Terminal Domain of Human DNA Polymerase Epsilon Subunit B
Descriptor: DNA POLYMERASE EPSILON SUBUNIT 2
Authors:Nuutinen, T, Fredriksson, K, Tossavainen, H, Pospiech, H, Pirila, P, Permi, P, Annila, A, Syvaoja, J.E.
Deposit date:2007-07-24
Release date:2008-08-05
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:The Solution Structure of the Amino-Terminal Domain of Human DNA Polymerase Epsilon Subunit B is Homologous to C-Domains of Aaa+ Proteins.
Nucleic Acids Res., 36, 2008
5I22
DownloadVisualize
BU of 5i22 by Molmil
Amphiphysin SH3 in complex with Chikungunya virus nsP3 peptide
Descriptor: CHIKV nsP3 peptide, Myc box-dependent-interacting protein 1
Authors:Tossavainen, H, Aitio, O, Hellman, M, Saksela, K, Permi, P.
Deposit date:2016-02-04
Release date:2016-06-15
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural Basis of the High Affinity Interaction between the Alphavirus Nonstructural Protein-3 (nsP3) and the SH3 Domain of Amphiphysin-2.
J.Biol.Chem., 291, 2016
7OJ9
DownloadVisualize
BU of 7oj9 by Molmil
NMR solution structure of SNX9 SH3 - EEEV nsP3 peptide complex
Descriptor: EEEV nsP3 peptide, Sorting nexin-9
Authors:Tossavainen, H, Permi, P.
Deposit date:2021-05-14
Release date:2022-04-13
Last modified:2022-06-15
Method:SOLUTION NMR
Cite:Structure of SNX9 SH3 in complex with a viral ligand reveals the molecular basis of its unique specificity for alanine-containing class I SH3 motifs.
Structure, 30, 2022
1NYA
DownloadVisualize
BU of 1nya by Molmil
NMR SOLUTION STRUCTURE OF CALERYTHRIN, AN EF-HAND CALCIUM-BINDING PROTEIN
Descriptor: CALCIUM ION, Calerythrin
Authors:Tossavainen, H, Permi, P, Annila, A, Kilpelainen, I, Drakenberg, T.
Deposit date:2003-02-12
Release date:2003-08-05
Last modified:2021-10-27
Method:SOLUTION NMR
Cite:NMR solution structure of calerythrin, an EF-hand calcium-binding protein from Saccharopolyspora erythraea
Eur.J.Biochem., 270, 2003
1WM4
DownloadVisualize
BU of 1wm4 by Molmil
Solution structure of mouse coactosin, an actin filament binding protein
Descriptor: Coactosin-like protein
Authors:Hellman, M, Paavilainen, V.O, Naumanen, P, Lappalainen, P, Annila, A, Permi, P.
Deposit date:2004-07-03
Release date:2004-11-02
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution structure of coactosin reveals structural homology to ADF/cofilin family proteins
Febs Lett., 576, 2004
5N9Q
DownloadVisualize
BU of 5n9q by Molmil
Structure of A. thaliana RCD1(468-567)
Descriptor: Inactive poly [ADP-ribose] polymerase RCD1
Authors:Tossavainen, H, Hellman, M, Vainonen, J, Kangasjarvi, J, Permi, P.
Deposit date:2017-02-27
Release date:2018-03-14
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Arabidopsis RCD1 coordinates chloroplast and mitochondrial functions through interaction with ANAC transcription factors.
Elife, 8, 2019
1SZL
DownloadVisualize
BU of 1szl by Molmil
F-spondin TSR domain 1
Descriptor: F-spondin
Authors:Tossavainen, H, Paakkonen, K, Permi, P, Kilpelainen, I, Guntert, P.
Deposit date:2004-04-06
Release date:2005-04-19
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution structures of the first and fourth TSR domains of F-spondin
Proteins, 64, 2006
1VEX
DownloadVisualize
BU of 1vex by Molmil
F-spondin TSR domain 4
Descriptor: F-spondin
Authors:Paakkonen, K, Tossavainen, H, Permi, P, Kilpelainen, I, Guntert, P.
Deposit date:2004-04-06
Release date:2005-04-19
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structures of the first and fourth TSR domains of F-spondin
Proteins, 64, 2006
4F1J
DownloadVisualize
BU of 4f1j by Molmil
Crystal structure of the MG2+ loaded VWA domain of plasmodium falciparum trap protein
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Pihlajamaa, T, Knuuti, J, Kajander, T, Sharma, A, Permi, P.
Deposit date:2012-05-07
Release date:2013-01-30
Last modified:2013-05-22
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Structure of Plasmodium falciparum TRAP (thrombospondin-related anonymous protein) A domain highlights distinct features in apicomplexan von Willebrand factor A homologues.
Biochem.J., 450, 2013
4F1K
DownloadVisualize
BU of 4f1k by Molmil
Crystal structure of the MG2+ free VWA domain of plasmodium falciparum trap protein
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, SULFATE ION, ...
Authors:Pihlajamaa, T, Knuuti, J, Kajander, T, Sharma, A, Permi, P.
Deposit date:2012-05-07
Release date:2013-01-30
Last modified:2013-05-22
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Structure of Plasmodium falciparum TRAP (thrombospondin-related anonymous protein) A domain highlights distinct features in apicomplexan von Willebrand factor A homologues.
Biochem.J., 450, 2013
5KQC
DownloadVisualize
BU of 5kqc by Molmil
Identification and structural characterization of LytU
Descriptor: Peptidase M23, ZINC ION
Authors:Tossavainen, H, Raulinaitis, V, Permi, P.
Deposit date:2016-07-06
Release date:2017-08-02
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Identification and structural characterization of LytU, a unique peptidoglycan endopeptidase from the lysostaphin family.
Sci Rep, 7, 2017
5KQB
DownloadVisualize
BU of 5kqb by Molmil
Identification and structural characterization of LytU
Descriptor: Peptidase M23, ZINC ION
Authors:Raulinaitis, V, Tossavainen, H, Permi, P.
Deposit date:2016-07-06
Release date:2017-08-02
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Identification and structural characterization of LytU, a unique peptidoglycan endopeptidase from the lysostaphin family.
Sci Rep, 7, 2017
5NMY
DownloadVisualize
BU of 5nmy by Molmil
NMR solution structure of lysostaphin
Descriptor: Lysostaphin, ZINC ION
Authors:Tossavainen, H, Raulinaitis, V, Permi, P.
Deposit date:2017-04-07
Release date:2018-05-16
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural and Functional Insights Into Lysostaphin-Substrate Interaction.
Front Mol Biosci, 5, 2018
2BBX
DownloadVisualize
BU of 2bbx by Molmil
NMR solution structure of the TSR domain of malaria TRAP protein
Descriptor: Thrombospondin-related anonymous protein
Authors:Tossavainen, H, Permi, P, Kilpelainen, I.
Deposit date:2005-10-18
Release date:2006-08-08
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:The layered fold of the TSR domain of P. falciparum TRAP contains a heparin binding site.
Protein Sci., 15, 2006
2MF6
DownloadVisualize
BU of 2mf6 by Molmil
Solution NMR structure of Chimeric Avidin, ChiAVD(I117Y), in the biotin bound form
Descriptor: Avidin, Avidin-related protein 4/5
Authors:Tossavainen, H, Kukkurainen, S, Maatta, J.A.E, Pihlajamaa, T, Hytonen, V.P, Kulomaa, M.S, Permi, P.
Deposit date:2013-10-07
Release date:2014-08-06
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Chimeric Avidin - NMR Structure and Dynamics of a 56 kDa Homotetrameric Thermostable Protein
Plos One, 9, 2014
2N1U
DownloadVisualize
BU of 2n1u by Molmil
Structure of SAP30L corepressor protein
Descriptor: Histone deacetylase complex subunit SAP30L, ZINC ION
Authors:Tossavainen, H, Permi, P.
Deposit date:2015-04-23
Release date:2015-11-25
Last modified:2016-03-23
Method:SOLUTION NMR
Cite:Redox-dependent disulfide bond formation in SAP30L corepressor protein: Implications for structure and function.
Protein Sci., 25, 2016
2ROL
DownloadVisualize
BU of 2rol by Molmil
Structural Basis of PxxDY motif recognition in SH3 binding
Descriptor: 12-meric peptide from T-cell surface glycoprotein CD3 epsilon chain, Epidermal growth factor receptor kinase substrate 8-like protein 1
Authors:Aitio, O, Hellman, M, Kesti, T, Kleino, I, Samuilova, O, Tossavainen, H, Paakkonen, K, Saksela, K, Permi, P.
Deposit date:2008-04-02
Release date:2009-03-03
Last modified:2020-02-26
Method:SOLUTION NMR
Cite:Structural basis of PxxDY motif recognition in SH3 binding
J.Mol.Biol., 382, 2008
2UUR
DownloadVisualize
BU of 2uur by Molmil
N-terminal NC4 domain of collagen IX
Descriptor: 1,2-ETHANEDIOL, COLLAGEN ALPHA-1(IX) CHAIN, SULFATE ION, ...
Authors:Leppanen, V.-M, Tossavainen, H, Permi, P, Lehtio, L, Ronnholm, G, Goldman, A, Kilpelainen, I, Pihlajamaa, T.
Deposit date:2007-03-07
Release date:2007-06-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of the N-Terminal Nc4 Domain of Collagen Ix, a Zinc Binding Member of the Laminin-Neurexin-Sex Hormone Binding Globulin (Lns) Domain Family.
J.Biol.Chem., 282, 2007
1ZK6
DownloadVisualize
BU of 1zk6 by Molmil
NMR solution structure of B. subtilis PrsA PPIase
Descriptor: Foldase protein prsA
Authors:Tossavainen, H, Permi, P, Purhonen, S.L, Sarvas, M, Kilpelainen, I, Seppala, R.
Deposit date:2005-05-02
Release date:2006-03-28
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:NMR solution structure and characterization of substrate binding site of the PPIase domain of PrsA protein from Bacillus subtilis
Febs Lett., 580, 2006
2K7Q
DownloadVisualize
BU of 2k7q by Molmil
Filamin A Ig-like domains 18-19
Descriptor: Filamin-A
Authors:Heikkinen, O.K, Kilpelainen, I, Koskela, H, Permi, P, Heikkinen, S, Ylanne, J.
Deposit date:2008-08-19
Release date:2009-07-07
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Atomic structures of two novel immunoglobulin-like domain pairs in the actin cross-linking protein filamin
J.Biol.Chem., 284, 2009
2K7P
DownloadVisualize
BU of 2k7p by Molmil
Filamin A Ig-like domains 16-17
Descriptor: Filamin-A
Authors:Heikkinen, O.K, Kilpelainen, I, Koskela, H, Permi, P, Heikkinen, S, Ylanne, J.
Deposit date:2008-08-19
Release date:2009-07-07
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Atomic structures of two novel immunoglobulin-like domain pairs in the actin cross-linking protein filamin
J.Biol.Chem., 284, 2009
2AAV
DownloadVisualize
BU of 2aav by Molmil
Solution NMR structure of Filamin A domain 17
Descriptor: Filamin A
Authors:Nakamura, F, Pudas, R, Heikkinen, O, Permi, P, Kilpelainen, I, Munday, A.D, Hartwig, J.H, Stossel, T.P, Ylanne, J.
Deposit date:2005-07-14
Release date:2006-05-02
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:The structure of the GPIb-filamin A complex
Blood, 107, 2006
2ALB
DownloadVisualize
BU of 2alb by Molmil
NMR structure of the N-terminal domain a of the glycoprotein chaperone ERp57
Descriptor: Protein disulfide-isomerase A3
Authors:Silvennoinen, L, Tossavainen, H, Myllyharju, J, Permi, P.
Deposit date:2005-08-05
Release date:2006-08-15
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:NMR structure of the N-terminal domain a of the glycoprotein chaperone ERp57
To be Published
2KVE
DownloadVisualize
BU of 2kve by Molmil
C-terminal domain of mesencephalic astrocyte-derived neurotrophic factor (MANF)
Descriptor: Mesencephalic astrocyte-derived neurotrophic factor
Authors:Hellman, M.H, Saarma, M, Permi, P.
Deposit date:2010-03-12
Release date:2010-11-03
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Mesencephalic Astrocyte-derived Neurotrophic Factor (MANF) Has a Unique Mechanism to Rescue Apoptotic Neurons
J.Biol.Chem., 286, 2011
2KVD
DownloadVisualize
BU of 2kvd by Molmil
Mesencephalic astrocyte-derived neurotrophic factor (MANF)
Descriptor: Mesencephalic astrocyte-derived neurotrophic factor
Authors:Hellman, M.H, Peranen, J, Saarma, M, Permi, P.
Deposit date:2010-03-12
Release date:2010-11-03
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Mesencephalic Astrocyte-derived Neurotrophic Factor (MANF) Has a Unique Mechanism to Rescue Apoptotic Neurons
J.Biol.Chem., 286, 2011

 

12>

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon