Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4UOI
DownloadVisualize
BU of 4uoi by Molmil
Unexpected structure for the N-terminal domain of Hepatitis C virus envelope glycoprotein E1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GENOME POLYPROTEIN
Authors:El Omari, K, Iourin, O, Kadlec, J, Harlos, K, Grimes, J.M, Stuart, D.I.
Deposit date:2014-06-04
Release date:2014-08-20
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3.49 Å)
Cite:Unexpected Structure for the N-Terminal Domain of Hepatitis C Virus Envelope Glycoprotein E1
Acta Crystallogr.,Sect.D, 70, 2014
4V5V
DownloadVisualize
BU of 4v5v by Molmil
Structure of respiratory syncytial virus nucleocapsid protein, P1 crystal form
Descriptor: RESPIRATORY SYNCYTIAL VIRUS NUCLEOCAPSID PROTEIN, RNA
Authors:El Omari, K, Dhaliwal, B, Ren, J, Abrescia, N.G.A, Lockyer, M, Powell, K.L, Hawkins, A.R, Stammers, D.K.
Deposit date:2011-05-04
Release date:2014-07-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Structures of Respiratory Syncytial Virus Nucleocapsid Protein from Two Crystal Forms: Details of Potential Packing Interactions in the Native Helical Form.
Acta Crystallogr.,Sect.F, 67, 2011
7O56
DownloadVisualize
BU of 7o56 by Molmil
X-ray Structure of Interferon Regulatory Factor 4 DNA binding domain bound to an interferon-stimulated response element solved by Phosphorus and Sulphur SAD methods
Descriptor: DNA (5'-D(P*AP*AP*TP*AP*AP*AP*AP*GP*AP*AP*AP*CP*CP*GP*AP*AP*AP*GP*TP*AP*A)-3'), DNA (5'-D(P*TP*TP*TP*AP*CP*TP*TP*TP*CP*GP*GP*TP*TP*TP*CP*TP*TP*TP*TP*AP*T)-3'), Interferon regulatory factor 4
Authors:El Omari, K, Agnarelli, A, Duman, R, Wagner, A, Mancini, E.J.
Deposit date:2021-04-07
Release date:2021-05-12
Last modified:2021-10-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Phosphorus and sulfur SAD phasing of the nucleic acid-bound DNA-binding domain of interferon regulatory factor 4.
Acta Crystallogr.,Sect.F, 77, 2021
8PAB
DownloadVisualize
BU of 8pab by Molmil
Structures of the ectodomains of Atypical porcine pestivirus solved by long wavelength sulphur SAD
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Genome polyprotein
Authors:Aitkenhead, H, Stuart, D.I, El Omari, K.
Deposit date:2023-06-07
Release date:2024-03-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural comparison of typical and atypical E2 pestivirus glycoproteins.
Structure, 32, 2024
8PAE
DownloadVisualize
BU of 8pae by Molmil
Structure of the ectodomain of Atypical Porcine Pestivirus E2 at 1.2A resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Genome polyprotein
Authors:Aitkenhead, H, Stuart, D.I, EL Omari, K.
Deposit date:2023-06-07
Release date:2024-03-27
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structural comparison of typical and atypical E2 pestivirus glycoproteins.
Structure, 32, 2024
8PAG
DownloadVisualize
BU of 8pag by Molmil
Crystal structure of the ectodomain of Norway rat pestivirus E2 glycoprotein
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Genome polyprotein, alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Aitkenhead, H, Stuart, D.I, EL Omari, K.
Deposit date:2023-06-07
Release date:2024-03-27
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structural comparison of typical and atypical E2 pestivirus glycoproteins.
Structure, 32, 2024
4ZEL
DownloadVisualize
BU of 4zel by Molmil
Human dopamine beta-hydroxylase
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, COPPER (II) ION, ...
Authors:Vendelboe, T.V, Harris, P, Christensen, H.E.M, Harlos, K, Walter, T, Zhao, Y, Omari, K.
Deposit date:2015-04-20
Release date:2016-04-20
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:The crystal structure of human dopamine beta-hydroxylase at 2.9 angstrom resolution.
Sci Adv, 2, 2016
5TCL
DownloadVisualize
BU of 5tcl by Molmil
Thaumatin from 4.96 A wavelength data collection
Descriptor: GLYCEROL, L(+)-TARTARIC ACID, Thaumatin-1
Authors:Aurelius, O, Duman, R, El Omari, K, Mykhaylyk, V, Wagner, A.
Deposit date:2016-09-15
Release date:2017-09-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.201 Å)
Cite:Long-wavelength macromolecular crystallography - First successful native SAD experiment close to the sulfur edge.
Nucl Instrum Methods Phys Res B, 411, 2017
6YO1
DownloadVisualize
BU of 6yo1 by Molmil
Crystal structure of ribonuclease A solved by vanadium SAD phasing
Descriptor: Ribonuclease pancreatic, URIDINE-2',3'-VANADATE
Authors:El Omari, K, Mohamad, N, Bountra, K, Duman, R, Romano, M, Schlegel, K, Kwong, H, Mykhaylyk, V, Olesen, C.E, Moller, J.V, Bublitz, M, Beis, K, Wagner, A.
Deposit date:2020-04-14
Release date:2020-11-04
Last modified:2020-12-02
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Experimental phasing with vanadium and application to nucleotide-binding membrane proteins.
Iucrj, 7, 2020
6YSO
DownloadVisualize
BU of 6yso by Molmil
Crystal structure of the (SR) Ca2+-ATPase solved by vanadium SAD phasing
Descriptor: CHLORIDE ION, MAGNESIUM ION, OCTANOIC ACID [3S-[3ALPHA, ...
Authors:El Omari, K, Mohamad, N, Bountra, K, Duman, R, Romano, M, Schlegel, K, Kwong, H, Mykhaylyk, V, Olesen, C.E, Moller, J.V, Bublitz, M, Beis, K, Wagner, A.
Deposit date:2020-04-22
Release date:2020-11-04
Last modified:2020-12-02
Method:X-RAY DIFFRACTION (3.13 Å)
Cite:Experimental phasing with vanadium and application to nucleotide-binding membrane proteins.
Iucrj, 7, 2020
6OWY
DownloadVisualize
BU of 6owy by Molmil
Spy H96L:Im7 K20pI-Phe complex; multiple anomalous datasets contained herein for element identification
Descriptor: CHLORIDE ION, IMIDAZOLE, IODIDE ION, ...
Authors:Rocchio, S, Duman, R, El Omari, K, Mykhaylyk, V, Yan, Z, Wagner, A, Bardwell, J.C.A, Horowitz, S.
Deposit date:2019-05-12
Release date:2019-05-29
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Identifying dynamic, partially occupied residues using anomalous scattering.
Acta Crystallogr D Struct Biol, 75, 2019
6OWZ
DownloadVisualize
BU of 6owz by Molmil
Spy H96L:Im7 L19pI-Phe complex; multiple anomalous datasets contained herein for element identification
Descriptor: CHLORIDE ION, IMIDAZOLE, IODIDE ION, ...
Authors:Rocchio, S, Duman, R, El Omari, K, Mykhaylyk, V, Yan, Z, Wagner, A, Bardwell, J.C.A, Horowitz, S.
Deposit date:2019-05-12
Release date:2019-05-29
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Identifying dynamic, partially occupied residues using anomalous scattering.
Acta Crystallogr D Struct Biol, 75, 2019
6OWX
DownloadVisualize
BU of 6owx by Molmil
Spy H96L:Im7 L18pI-Phe complex; multiple anomalous datasets contained herein for element identification
Descriptor: CHLORIDE ION, IMIDAZOLE, IODIDE ION, ...
Authors:Rocchio, S, Duman, R, El Omari, K, Mykhaylyk, V, Yan, Z, Wagner, A, Bardwell, J.C.A, Horowitz, S.
Deposit date:2019-05-12
Release date:2019-05-29
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Identifying dynamic, partially occupied residues using anomalous scattering.
Acta Crystallogr D Struct Biol, 75, 2019
5MUV
DownloadVisualize
BU of 5muv by Molmil
Atomic structure fitted into a localized reconstruction of bacteriophage phi6 packaging hexamer P4
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CALCIUM ION, Packaging enzyme P4
Authors:Sun, Z, El Omari, K, Sun, X, Ilca, S, Kotecha, A, Stuart, D.I, Poranen, M.M, Huiskonen, J.T.
Deposit date:2017-01-14
Release date:2017-03-22
Last modified:2019-04-24
Method:ELECTRON MICROSCOPY (9.1 Å)
Cite:Double-stranded RNA virus outer shell assembly by bona fide domain-swapping.
Nat Commun, 8, 2017
5MUW
DownloadVisualize
BU of 5muw by Molmil
Atomic structure of P4 packaging enzyme fitted into a localized reconstruction of bacteriophage phi6 vertex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CALCIUM ION, Packaging enzyme P4
Authors:Sun, Z, El Omari, K, Sun, X, Ilca, S, Kotecha, A, Stuart, D.I, Poranen, M.M, Huiskonen, J.T.
Deposit date:2017-01-14
Release date:2017-03-22
Last modified:2019-12-11
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Double-stranded RNA virus outer shell assembly by bona fide domain-swapping.
Nat Commun, 8, 2017
2C5U
DownloadVisualize
BU of 2c5u by Molmil
T4 RNA Ligase (Rnl1) Crystal Structure
Descriptor: CALCIUM ION, CHLORIDE ION, DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, ...
Authors:El Omari, K, Ren, J, Bird, L.E, Bona, M.K, Klarmann, G, LeGrice, S.F.J, Stammers, D.K.
Deposit date:2005-11-01
Release date:2005-11-04
Last modified:2012-09-12
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Molecular Architecture and Ligand Recognition Determinants for T4 RNA Ligase
J.Biol.Chem., 281, 2006
2BKA
DownloadVisualize
BU of 2bka by Molmil
CC3(TIP30)Crystal Structure
Descriptor: 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL, GLYCEROL, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:El Omari, K, Bird, L.E, Nichols, C.E, Ren, J, Stammers, D.K.
Deposit date:2005-02-14
Release date:2005-02-21
Last modified:2016-12-21
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of Cc3 (Tip30): Implications for its Role as a Tumor Suppressor
J.Biol.Chem., 280, 2005
5E8C
DownloadVisualize
BU of 5e8c by Molmil
pseudorabies virus nuclear egress complex, pUL31, pUL34
Descriptor: CHLORIDE ION, UL31, UL34 protein, ...
Authors:Zeev-Ben-Mordehai, T, Cheleski, J, Whittle, C, El Omari, K, Harlos, K, Hagen, C, Klupp, B, Mettenleiter, T.C, Gruenewald, K.
Deposit date:2015-10-14
Release date:2015-12-23
Last modified:2016-01-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal Structure of the Herpesvirus Nuclear Egress Complex Provides Insights into Inner Nuclear Membrane Remodeling.
Cell Rep, 13, 2015
5D98
DownloadVisualize
BU of 5d98 by Molmil
Influenza C Virus RNA-dependent RNA Polymerase - Space group P43212
Descriptor: MAGNESIUM ION, Polymerase acidic protein, Polymerase basic protein 2, ...
Authors:Hengrung, N, El Omari, K, Serna Martin, I, Vreede, F.T, Cusack, S, Rambo, R.P, Vonrhein, C, Bricogne, G, Stuart, D.I, Grimes, J.M, Fodor, E.
Deposit date:2015-08-18
Release date:2015-10-21
Last modified:2017-09-13
Method:X-RAY DIFFRACTION (3.9 Å)
Cite:Crystal structure of the RNA-dependent RNA polymerase from influenza C virus.
Nature, 527, 2015
5D9A
DownloadVisualize
BU of 5d9a by Molmil
Influenza C Virus RNA-dependent RNA Polymerase - Space group P212121
Descriptor: Polymerase acidic protein, Polymerase basic protein 2, RNA-directed RNA polymerase catalytic subunit
Authors:Hengrung, N, El Omari, K, Serna Martin, I, Vreede, F.T, Cusack, S, Rambo, R.P, Vonrhein, C, Bricogne, G, Stuart, D.I, Grimes, J.M, Fodor, E.
Deposit date:2015-08-18
Release date:2015-10-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (4.3 Å)
Cite:Crystal structure of the RNA-dependent RNA polymerase from influenza C virus.
Nature, 527, 2015
2J0F
DownloadVisualize
BU of 2j0f by Molmil
Structural basis for non-competitive product inhibition in human thymidine phosphorylase: implication for drug design
Descriptor: THYMIDINE PHOSPHORYLASE, THYMINE
Authors:El Omari, K, Bronckaers, A, Liekens, S, Perez-Perez, M.J, Balzarini, J, Stammers, D.K.
Deposit date:2006-08-02
Release date:2006-10-11
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Structural Basis for Non-Competitive Product Inhibition in Human Thymidine Phosphorylase: Implications for Drug Design.
Biochem.J., 399, 2006
2J87
DownloadVisualize
BU of 2j87 by Molmil
Structure of vaccinia virus thymidine kinase in complex with dTTP: insights for drug design
Descriptor: MAGNESIUM ION, THYMIDINE KINASE, THYMIDINE-5'-TRIPHOSPHATE, ...
Authors:El Omari, K, Solaroli, N, Karlsson, A, Balzarini, J, Stammers, D.K.
Deposit date:2006-10-23
Release date:2006-11-13
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure of Vaccinia Virus Thymidine Kinase in Complex with Dttp: Insights for Drug Design.
Bmc Struct.Biol., 6, 2006
2J41
DownloadVisualize
BU of 2j41 by Molmil
Crystal structure of Staphylococcus aureus guanylate monophosphate kinase
Descriptor: GUANOSINE-5'-MONOPHOSPHATE, GUANYLATE KINASE, POTASSIUM ION, ...
Authors:El Omari, K, Dhaliwal, B, Lockyer, M, Charles, I, Hawkins, A.R, Stammers, D.K.
Deposit date:2006-08-24
Release date:2006-10-11
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of Staphylococcus Aureus Guanylate Monophosphate Kinase
Acta Crystallogr.,Sect.F, 62, 2006
6JJH
DownloadVisualize
BU of 6jjh by Molmil
Crystal structure of a two-quartet RNA parallel G-quadruplex complexed with the porphyrin TMPyP4
Descriptor: (1Z,4Z,9Z,15Z)-5,10,15,20-tetrakis(1-methylpyridin-1-ium-4-yl)-21,23-dihydroporphyrin, POTASSIUM ION, RNA (5'-R(*GP*GP*CP*UP*CP*GP*GP*CP*GP*GP*CP*GP*GP*A)-3')
Authors:Zhang, Y.S, EI Omari, K, Duman, R, Wagner, A, Parkinson, G.N, Wei, D.G.
Deposit date:2019-02-25
Release date:2020-02-26
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Native de novo structural determinations of non-canonical nucleic acid motifs by X-ray crystallography at long wavelengths.
Nucleic Acids Res., 48, 2020
6JJF
DownloadVisualize
BU of 6jjf by Molmil
Crystal structure of a two-quartet DNA mixed-parallel/antiparallel G-quadruplex
Descriptor: COBALT HEXAMMINE(III), DNA (5'-D(*GP*GP*CP*TP*CP*GP*GP*CP*GP*GP*CP*GP*GP*A)-3'), POTASSIUM ION, ...
Authors:Zhang, Y.S, EI Omari, K, Duman, R, Wagner, A, Parkinson, G.N, Wei, D.G.
Deposit date:2019-02-25
Release date:2020-02-26
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Native de novo structural determinations of non-canonical nucleic acid motifs by X-ray crystallography at long wavelengths.
Nucleic Acids Res., 48, 2020

218500

PDB entries from 2024-04-17

PDB statisticsPDBj update infoContact PDBjnumon