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5ZIH
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CRYSTAL STRUCTURE OF THE RED LIGHT-ACTIVATED CHANNELRHODOPSIN CHRIMSON.
Descriptor:Sensory opsin A,Chrimson, (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
Authors:Oda, K., Vierock, J., Oishi, S., Taniguchi, R., Yamashita, K., Nishizawa, T., Hegemann, P., Nureki, O.
Deposit date:2018-03-15
Release date:2018-11-21
Last modified:2018-11-28
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of the red light-activated channelrhodopsin Chrimson.
Nat Commun, 9, 2018
2ZW4
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CRYSTAL STRUCTURE OF BLEOMYCIN N-ACETYLTRANSFERASE COMPLEXED WITH COENZYME A IN THE ORTHORHOMBIC CRYSTAL
Descriptor:Bleomycin acetyltransferase, COENZYME A, SULFATE ION
Authors:Oda, K., Matoba, Y., Sugiyama, M.
Deposit date:2008-12-01
Release date:2009-11-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Catalytic mechanism of bleomycin N-acetyltransferase proposed on the basis of its crystal structure.
J.Biol.Chem., 285, 2010
2ZW5
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CRYSTAL STRUCTURE OF BLEOMYCIN N-ACETYLTRANSFERASE COMPLEXED WITH COENZYME A IN THE TRIGONAL CRYSTAL
Descriptor:Bleomycin acetyltransferase, COENZYME A
Authors:Oda, K., Matoba, Y., Sugiyama, M.
Deposit date:2008-12-01
Release date:2009-11-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Catalytic mechanism of bleomycin N-acetyltransferase proposed on the basis of its crystal structure.
J.Biol.Chem., 285, 2010
2ZW6
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CRYSTAL STRUCTURE OF BLEOMYCIN N-ACETYLTRANSFERASE FROM BLEOMYCIN-PRODUCING STREPTOMYCES VERTICILLUS ATCC15003
Descriptor:Bleomycin acetyltransferase, SULFATE ION
Authors:Oda, K., Matoba, Y., Sugiyama, M.
Deposit date:2008-12-01
Release date:2009-11-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Catalytic mechanism of bleomycin N-acetyltransferase proposed on the basis of its crystal structure.
J.Biol.Chem., 285, 2010
2ZW7
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CRYSTAL STRUCTURE OF BLEOMYCIN N-ACETYLTRANSFERASE COMPLEXED WITH BLEOMYCIN A2 AND COENZYME A
Descriptor:Bleomycin acetyltransferase, COENZYME A, BLEOMYCIN A2
Authors:Oda, K., Matoba, Y., Sugiyama, M.
Deposit date:2008-12-01
Release date:2009-11-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Catalytic mechanism of bleomycin N-acetyltransferase proposed on the basis of its crystal structure.
J.Biol.Chem., 285, 2010
3VVL
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CRYSTAL STRUCTURE OF L-SERINE-O-ACETYLTRANSFERASE FOUND IN D-CYCLOSERINE BIOSYNTHETIC PATHWAY
Descriptor:Homoserine O-acetyltransferase
Authors:Oda, K., Matoba, Y., Kumagai, T., Noda, M., Sugiyama, M.
Deposit date:2012-07-26
Release date:2013-03-20
Last modified:2013-06-05
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Crystallographic study to determine the substrate specificity of an L-serine-acetylating enzyme found in the D-cycloserine biosynthetic pathway
J.Bacteriol., 195, 2013
3VVM
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CRYSTAL STRUCTURE OF G52A-P55G MUTANT OF L-SERINE-O-ACETYLTRANSFERASE FOUND IN D-CYCLOSERINE BIOSYNTHETIC PATHWAY
Descriptor:Homoserine O-acetyltransferase
Authors:Oda, K., Matoba, Y., Kumagai, T., Noda, M., Sugiyama, M.
Deposit date:2012-07-26
Release date:2013-03-20
Last modified:2013-06-05
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystallographic study to determine the substrate specificity of an L-serine-acetylating enzyme found in the D-cycloserine biosynthetic pathway
J.Bacteriol., 195, 2013
3WWT
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CRYSTAL STRUCTURE OF THE Y3:STAT1ND COMPLEX
Descriptor:Signal transducer and activator of transcription 1-alpha/beta, Protein C', CALCIUM ION
Authors:Sakaguchi, T., Oda, K., Matoba, Y.
Deposit date:2014-06-27
Release date:2015-07-01
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Basis of the Inhibition of STAT1 Activity by Sendai Virus C protein
To be Published
1BHU
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THE 3D STRUCTURE OF THE STREPTOMYCES METALLOPROTEINASE INHIBITOR, SMPI, ISOLATED FROM STREPTOMYCES NIGRESCENS TK-23, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor:METALLOPROTEINASE INHIBITOR
Authors:Tate, S., Ohno, A., Seeram, S.S., Hiraga, K., Oda, K., Kainosho, M.
Deposit date:1998-06-10
Release date:1999-01-06
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure of the Streptomyces metalloproteinase inhibitor, SMPI, isolated from Streptomyces nigrescens TK-23: another example of an ancestral beta gamma-crystallin precursor structure.
J.Mol.Biol., 282, 1998
1GT9
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HIGH RESOLUTION CRYSTAL STRUCTURE OF A THERMOSTABLE SERINE-CARBOXYL TYPE PROTEINASE, KUMAMOLISIN (KSCP)
Descriptor:KUMAMOLYSIN, CALCIUM ION, SULFATE ION
Authors:Comellas-Bigler, M., Fuentes-Prior, P., Maskos, K., Huber, R., Oyama, H., Uchida, K., Dunn, B.M., Oda, K., Bode, W.
Deposit date:2002-01-14
Release date:2002-06-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:The 1.4 A Crystal Structure of Kumamolysin. A Thermostable Serine-Carboxyl-Type Proteinase
Structure, 10, 2002
1GTG
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CRYSTAL STRUCTURE OF THE THERMOSTABLE SERINE-CARBOXYL TYPE PROTEINASE, KUMAMOLYSIN (KSCP)
Descriptor:KUMAMOLYSIN, CALCIUM ION
Authors:Comellas-Bigler, M., Fuentes-Prior, P., Maskos, K., Huber, R., Oyama, H., Uchida, K., Dunn, B.M., Oda, K., Bode, W.
Deposit date:2002-01-15
Release date:2002-06-13
Last modified:2018-02-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The 1.4 A Crystal Structure of Kumamolysin. A Thermostable Serine-Carboxyl-Type Proteinase
Structure, 10, 2002
1GTJ
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CRYSTAL STRUCTURE OF THE THERMOSTABLE SERINE-CARBOXYL TYPE PROTEINASE, KUMAMOLISIN (KSCP) - COMPLEX WITH AC-ILE-ALA-PHE-CHO
Descriptor:KUMAMOLYSIN, ALDEHYDE INHIBITOR, SULFATE ION, ...
Authors:Comellas-Bigler, M., Fuentes-Prior, P., Maskos, K., Huber, R., Oyama, H., Uchida, K., Dunn, B.M., Oda, K., Bode, W.
Deposit date:2002-01-15
Release date:2002-06-13
Last modified:2018-02-28
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:The 1.4 A Crystal Structure of Kumamolysin. A Thermostable Serine-Carboxyl-Type Proteinase
Structure, 10, 2002
1GTL
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THE THERMOSTABLE SERINE-CARBOXYL TYPE PROTEINASE, KUMAMOLISIN (KSCP) - COMPLEX WITH AC-ILE-PRO-PHE-CHO
Descriptor:KUMAMOLYSIN, ALDEHYDE INHIBITOR, CALCIUM ION, ...
Authors:Comellas-Bigler, M., Fuentes-Prior, P., Maskos, K., Huber, R., Oyama, H., Uchida, K., Dunn, B.M., Oda, K., Bode, W.
Deposit date:2002-01-16
Release date:2002-06-13
Last modified:2018-02-28
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The 1.4 A Crystal Structure of Kumamolysin. A Thermostable Serine-Carboxyl-Type Proteinase
Structure, 10, 2002
2IFR
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CRYSTAL STRUCTURE OF SCYTALIDO-GLUTAMIC PEPTIDASE WITH A PEPTIDE BASED TRANSITION STATE ANALOG
Descriptor:Scytalidopepsin B, Octapeptide, ACETIC ACID
Authors:Pillai, B., Cherney, M.M., Hiraga, K., Takada, K., Oda, K., James, M.N.
Deposit date:2006-09-21
Release date:2006-10-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of scytalidoglutamic peptidase with its first potent inhibitor provides insights into substrate specificity and catalysis.
J.Mol.Biol., 365, 2007
2IFW
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CRYSTAL STRUCTURE OF SCYTALIDO-GLUTAMIC PEPTIDASE WITH A TRANSITION STATE ANALOG INHIBITOR
Descriptor:Scytalidopepsin B, Heptapeptide, ACETIC ACID, ...
Authors:Pillai, B., Cherney, M.M., Hiraga, K., Takada, K., Oda, K., James, M.N.
Deposit date:2006-09-21
Release date:2006-10-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of scytalidoglutamic peptidase with its first potent inhibitor provides insights into substrate specificity and catalysis.
J.Mol.Biol., 365, 2007
1F53
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NMR STRUCTURE OF KILLER TOXIN-LIKE PROTEIN SKLP
Descriptor:YEAST KILLER TOXIN-LIKE PROTEIN
Authors:Ohki, S., Kariya, E., Hiraga, K., Wakamiya, A., Isobe, T., Oda, K., Kainosho, M.
Deposit date:2000-06-12
Release date:2000-12-27
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure of Streptomyces killer toxin-like protein, SKLP: further evidence for the wide distribution of single-domain betagamma-crystallin superfamily proteins.
J.Mol.Biol., 305, 2001
1T1E
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HIGH RESOLUTION CRYSTAL STRUCTURE OF THE INTACT PRO-KUMAMOLISIN, A SEDOLISIN TYPE PROTEINASE (PREVIOUSLY CALLED KUMAMOLYSIN OR KSCP)
Descriptor:kumamolisin, CALCIUM ION
Authors:Comellas-Bigler, M., Maskos, K., Huber, R., Oyama, H., Oda, K., Bode, W.
Deposit date:2004-04-16
Release date:2004-08-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:1.2 a crystal structure of the serine carboxyl proteinase pro-kumamolisin: structure of an intact pro-subtilase
Structure, 12, 2004
1T1G
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HIGH RESOLUTION CRYSTAL STRUCTURE OF MUTANT E23A OF KUMAMOLISIN, A SEDOLISIN TYPE PROTEINASE (PREVIOUSLY CALLED KUMAMOLYSIN OR KSCP)
Descriptor:kumamolisin, CALCIUM ION, SULFATE ION
Authors:Comellas-Bigler, M., Maskos, K., Huber, R., Oyama, H., Oda, K., Bode, W.
Deposit date:2004-04-16
Release date:2004-08-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:1.2 a crystal structure of the serine carboxyl proteinase pro-kumamolisin: structure of an intact pro-subtilase
Structure, 12, 2004
1T1I
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HIGH RESOLUTION CRYSTAL STRUCTURE OF MUTANT W129A OF KUMAMOLISIN, A SEDOLISIN TYPE PROTEINASE (PREVIOUSLY CALLED KUMAMOLYSIN OR KSCP)
Descriptor:kumamolisin, CALCIUM ION, SULFATE ION
Authors:Comellas-Bigler, M., Maskos, K., Huber, R., Oyama, H., Oda, K., Bode, W.
Deposit date:2004-04-16
Release date:2004-08-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:1.2 a crystal structure of the serine carboxyl proteinase pro-kumamolisin: structure of an intact pro-subtilase
Structure, 12, 2004
6M8W
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PSEUDOMONAS SERINE-CARBOXYL PROTEINASE (SEDOLISIN) COMPLEXED WITH THE INHIBITOR AIAF
Descriptor:SEDOLISIN, AIAF PEPTIDE INHIBITOR, CALCIUM ION, ...
Authors:Wlodawer, A., Li, M., Gustchina, A., Dauter, Z., Uchida, K., Oyama, H., Goldfarb, N.E., Dunn, B.M., Oda, K.
Deposit date:2018-08-22
Release date:2018-10-24
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Inhibitor complexes of the Pseudomonas serine-carboxyl proteinase
Biochemistry, 40, 2001
6M8Y
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PSEUDOMONAS SERINE-CARBOXYL PROTEINASE (SEDOLISIN) COMPLEXED WITH THE INHIBITOR AIPF
Descriptor:SEDOLISIN, AIPF PEPTIDE INHIBITOR, CALCIUM ION, ...
Authors:Wlodawer, A., Li, M., Gustchina, A., Dauter, Z., Uchida, K., Oyama, H., Goldfarb, N.E., Dunn, B.M., Oda, K.
Deposit date:2018-08-22
Release date:2018-10-24
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Inhibitor complexes of the Pseudomonas serine-carboxyl proteinase
Biochemistry, 40, 2001
6M9C
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PSEUDOMONAS SERINE-CARBOXYL PROTEINASE (SEDOLISIN) COMPLEXED WITH THE INHIBITOR PSEUDOTYROSTATIN
Descriptor:SEDOLISIN, Pseudotyrostatin, CALCIUM ION, ...
Authors:Wlodawer, A., Li, M., Gustchina, A., Dauter, Z., Uchida, K., Oyama, H., Goldfarb, N.E., Dunn, B.M., Oda, K.
Deposit date:2018-08-23
Release date:2018-10-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Inhibitor complexes of the Pseudomonas serine-carboxyl proteinase
Biochemistry, 40, 2001
6M9D
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PSEUDOMONAS SERINE-CARBOXYL PROTEINASE (SEDOLISIN) COMPLEXED WITH THE INHIBITOR CHYMOSTATIN
Descriptor:SEDOLISIN, Chymostatin A, CALCIUM ION
Authors:Wlodawer, A., Li, M., Gustchina, A., Dauter, Z., Uchida, K., Oyama, H., Goldfarb, N.E., Dunn, B.M., Oda, K.
Deposit date:2018-08-23
Release date:2018-10-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Inhibitor complexes of the Pseudomonas serine-carboxyl proteinase
Biochemistry, 40, 2001
6M9F
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PSEUDOMONAS SERINE-CARBOXYL PROTEINASE (SEDOLISIN) COMPLEXED WITH THE INHIBITOR TYROSTATIN
Descriptor:SEDOLISIN, Tyrostatin, CALCIUM ION, ...
Authors:Wlodawer, A., Li, M., Gustchina, A., Dauter, Z., Uchida, K., Oyama, H., Goldfarb, N.E., Dunn, B.M., Oda, K.
Deposit date:2018-08-23
Release date:2018-10-24
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Inhibitor complexes of the Pseudomonas serine-carboxyl proteinase
Biochemistry, 40, 2001
1NLU
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PSEUDOMONAS SEDOLISIN (SERINE-CARBOXYL PROTEINASE) COMPLEXED WITH TWO MOLECULES OF PSEUDO-IODOTYROSTATIN
Descriptor:SEDOLISIN, PSEUDO-IODOTYROSTATIN, CALCIUM ION
Authors:Wlodawer, A., Li, M., Gustchina, A., Dauter, Z., Uchida, K., Oyama, H., Glodfarb, N.E., Dunn, B.M., Oda, K.
Deposit date:2003-01-07
Release date:2004-01-20
Last modified:2012-12-12
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Two inhibitor molecules bound in the active site of Pseudomonas sedolisin: a model for the bi-product complex following cleavage of a peptide substrate.
Biochem.Biophys.Res.Commun., 314, 2004
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