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11AS
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BU of 11as by Molmil
ASPARAGINE SYNTHETASE MUTANT C51A, C315A COMPLEXED WITH L-ASPARAGINE
Descriptor: ASPARAGINE, ASPARAGINE SYNTHETASE
Authors:Nakatsu, T, Kato, H, Oda, J.
Deposit date:1997-12-02
Release date:1998-12-30
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of asparagine synthetase reveals a close evolutionary relationship to class II aminoacyl-tRNA synthetase.
Nat.Struct.Biol., 5, 1998
12AS
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BU of 12as by Molmil
ASPARAGINE SYNTHETASE MUTANT C51A, C315A COMPLEXED WITH L-ASPARAGINE AND AMP
Descriptor: ADENOSINE MONOPHOSPHATE, ASPARAGINE, ASPARAGINE SYNTHETASE
Authors:Nakatsu, T, Kato, H, Oda, J.
Deposit date:1997-12-02
Release date:1998-12-30
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of asparagine synthetase reveals a close evolutionary relationship to class II aminoacyl-tRNA synthetase.
Nat.Struct.Biol., 5, 1998
2D1Q
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BU of 2d1q by Molmil
Crystal structure of the thermostable Japanese Firefly Luciferase complexed with MgATP
Descriptor: ADENOSINE MONOPHOSPHATE, Luciferin 4-monooxygenase
Authors:Nakatsu, T, Ichiyama, S, Hiratake, J, Saldanha, A, Kobashi, N, Sakata, K, Kato, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-08-31
Release date:2006-03-21
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for the spectral difference in luciferase bioluminescence.
Nature, 440, 2006
2D1R
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BU of 2d1r by Molmil
Crystal structure of the thermostable Japanese firefly Luciferase complexed with OXYLUCIFERIN and AMP
Descriptor: 2-(6-HYDROXY-1,3-BENZOTHIAZOL-2-YL)-1,3-THIAZOL-4(5H)-ONE, ADENOSINE MONOPHOSPHATE, Luciferin 4-monooxygenase
Authors:Nakatsu, T, Ichiyama, S, Hiratake, J, Saldanha, A, Kobashi, N, Sakata, K, Kato, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-08-31
Release date:2006-03-21
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural basis for the spectral difference in luciferase bioluminescence.
Nature, 440, 2006
2D1T
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BU of 2d1t by Molmil
Crystal structure of the thermostable Japanese Firefly Luciferase red-color emission S286N mutant complexed with High-energy intermediate analogue
Descriptor: 5'-O-[N-(DEHYDROLUCIFERYL)-SULFAMOYL] ADENOSINE, CHLORIDE ION, Luciferin 4-monooxygenase
Authors:Nakatsu, T, Ichiyama, S, Hiratake, J, Saldanha, A, Kobashi, N, Sakata, K, Kato, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-08-31
Release date:2006-03-21
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural basis for the spectral difference in luciferase bioluminescence.
Nature, 440, 2006
2D1S
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BU of 2d1s by Molmil
Crystal structure of the thermostable Japanese Firefly Luciferase complexed with High-energy intermediate analogue
Descriptor: 5'-O-[N-(DEHYDROLUCIFERYL)-SULFAMOYL] ADENOSINE, CHLORIDE ION, Luciferin 4-monooxygenase
Authors:Nakatsu, T, Ichiyama, S, Hiratake, J, Saldanha, A, Kobashi, N, Sakata, K, Kato, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-08-31
Release date:2006-03-21
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structural basis for the spectral difference in luciferase bioluminescence.
Nature, 440, 2006
1AUN
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BU of 1aun by Molmil
PATHOGENESIS-RELATED PROTEIN 5D FROM NICOTIANA TABACUM
Descriptor: PR-5D
Authors:Koiwa, H, Kato, H, Nakatsu, T, Oda, J, Yamada, Y, Sato, F.
Deposit date:1997-08-29
Release date:1998-03-04
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of tobacco PR-5d protein at 1.8 A resolution reveals a conserved acidic cleft structure in antifungal thaumatin-like proteins.
J.Mol.Biol., 286, 1999
1AE1
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BU of 1ae1 by Molmil
TROPINONE REDUCTASE-I COMPLEX WITH NADP
Descriptor: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, TROPINONE REDUCTASE-I
Authors:Nakajima, K, Yamashita, A, Akama, H, Nakatsu, T, Kato, H, Hashimoto, T, Oda, J, Yamada, Y.
Deposit date:1997-10-23
Release date:1998-11-18
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structures of two tropinone reductases: different reaction stereospecificities in the same protein fold.
Proc.Natl.Acad.Sci.USA, 95, 1998
2ZZO
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BU of 2zzo by Molmil
Crystal structure of the complex between GP41 fragment N36 and fusion inhibitor C34/S138A
Descriptor: Transmembrane protein
Authors:Watabe, T, Nakano, H, Nakatsu, T, Kato, H, Fujii, N.
Deposit date:2009-02-20
Release date:2009-08-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:X-ray crystallographic study of an HIV-1 fusion inhibitor with the gp41 S138A substitution
J.Mol.Biol., 392, 2009
1IPE
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BU of 1ipe by Molmil
TROPINONE REDUCTASE-II COMPLEXED WITH NADPH
Descriptor: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, TROPINONE REDUCTASE-II
Authors:Yamashita, A, Endo, M, Higashi, T, Nakatsu, T, Yamada, Y, Oda, J, Kato, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2001-05-09
Release date:2003-06-03
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Capturing Enzyme Structure Prior to Reaction Initiation: Tropinone Reductase-II-Substrate Complexes
BIOCHEMISTRY, 42, 2003
1IPF
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BU of 1ipf by Molmil
TROPINONE REDUCTASE-II COMPLEXED WITH NADPH AND TROPINONE
Descriptor: 8-METHYL-8-AZABICYCLO[3,2,1]OCTAN-3-ONE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, TROPINONE REDUCTASE-II
Authors:Yamashita, A, Endo, M, Higashi, T, Nakatsu, T, Yamada, Y, Oda, J, Kato, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2001-05-09
Release date:2003-06-03
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Capturing Enzyme Structure Prior to Reaction Initiation: Tropinone Reductase-II-Substrate Complexes
BIOCHEMISTRY, 42, 2003
7FC9
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BU of 7fc9 by Molmil
Crystal structure of CmABCB1 in lipidic mesophase revealed by LCP-SFX
Descriptor: ACETATE ION, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Pan, D, Oyama, R, Sato, T, Nakane, T, Mizunuma, R, Matsuoka, K, Joti, Y, Tono, K, Nango, E, Iwata, S, Nakatsu, T, Kato, H.
Deposit date:2021-07-14
Release date:2022-02-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of CmABCB1 multi-drug exporter in lipidic mesophase revealed by LCP-SFX.
Iucrj, 9, 2022
1KCD
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BU of 1kcd by Molmil
Endopolygalacturonase I from Stereum purpureum complexed with two galacturonate at 1.15 A resolution.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ENDOPOLYGALACTURONASE, ...
Authors:Shimizu, T, Nakatsu, T, Miyairi, K, Okuno, T, Kato, H.
Deposit date:2001-11-08
Release date:2002-06-05
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Active-site architecture of endopolygalacturonase I from Stereum purpureum revealed by crystal structures in native and ligand-bound forms at atomic resolution.
Biochemistry, 41, 2002
1KCC
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BU of 1kcc by Molmil
Endopolygalacturonase I from Stereum purpureum complexed with a galacturonate at 1.00 A resolution.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ENDOPOLYGALACTURONASE, ...
Authors:Shimizu, T, Nakatsu, T, Miyairi, K, Okuno, T, Kato, H.
Deposit date:2001-11-08
Release date:2002-06-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1 Å)
Cite:Active-site architecture of endopolygalacturonase I from Stereum purpureum revealed by crystal structures in native and ligand-bound forms at atomic resolution.
Biochemistry, 41, 2002
5GX3
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BU of 5gx3 by Molmil
Luciferin-regenerating enzyme collected with serial synchrotron rotational crystallography with accumulated dose of 6.9 MGy (6th measurement)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, GLYCEROL, Luciferin regenerating enzyme, ...
Authors:Hasegawa, K, Yamashita, K, Murai, T, Nuemket, N, Hirata, K, Ueno, G, Ago, H, Nakatsu, T, Kumasaka, T, Yamamoto, M.
Deposit date:2016-09-15
Release date:2017-01-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Development of a dose-limiting data collection strategy for serial synchrotron rotation crystallography
J Synchrotron Radiat, 24, 2017
5GX5
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BU of 5gx5 by Molmil
Luciferin-regenerating enzyme collected with serial synchrotron rotational crystallography with accumulated dose of 26 MGy (23rd measurement)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, GLYCEROL, Luciferin regenerating enzyme, ...
Authors:Hasegawa, K, Yamashita, K, Murai, T, Nuemket, N, Hirata, K, Ueno, G, Ago, H, Nakatsu, T, Kumasaka, T, Yamamoto, M.
Deposit date:2016-09-15
Release date:2017-01-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Development of a dose-limiting data collection strategy for serial synchrotron rotation crystallography
J Synchrotron Radiat, 24, 2017
5GX1
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BU of 5gx1 by Molmil
Luciferin-regenerating enzyme collected with serial synchrotron rotational crystallography with accumulated dose of 1.1 MGy (1st measurement)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, GLYCEROL, Luciferin regenerating enzyme, ...
Authors:Hasegawa, K, Yamashita, K, Murai, T, Nuemket, N, Hirata, K, Ueno, G, Ago, H, Nakatsu, T, Kumasaka, T, Yamamoto, M.
Deposit date:2016-09-15
Release date:2017-01-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Development of a dose-limiting data collection strategy for serial synchrotron rotation crystallography
J Synchrotron Radiat, 24, 2017
5GX2
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BU of 5gx2 by Molmil
Luciferin-regenerating enzyme collected with serial synchrotron rotational crystallography with accumulated dose of 3.4 MGy (3rd measurement)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, GLYCEROL, Luciferin regenerating enzyme, ...
Authors:Hasegawa, K, Yamashita, K, Murai, T, Nuemket, N, Hirata, K, Ueno, G, Ago, H, Nakatsu, T, Kumasaka, T, Yamamoto, M.
Deposit date:2016-09-15
Release date:2017-01-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Development of a dose-limiting data collection strategy for serial synchrotron rotation crystallography
J Synchrotron Radiat, 24, 2017
5GX4
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BU of 5gx4 by Molmil
Luciferin-regenerating enzyme collected with serial synchrotron rotational crystallography with accumulated dose of 14 MGy (12th measurement)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, GLYCEROL, Luciferin regenerating enzyme, ...
Authors:Hasegawa, K, Yamashita, K, Murai, T, Nuemket, N, Hirata, K, Ueno, G, Ago, H, Nakatsu, T, Kumasaka, T, Yamamoto, M.
Deposit date:2016-09-15
Release date:2017-01-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Development of a dose-limiting data collection strategy for serial synchrotron rotation crystallography
J Synchrotron Radiat, 24, 2017
1K5C
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BU of 1k5c by Molmil
Endopolygalacturonase I from Stereum purpureum at 0.96 A resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ENDOPOLYGALACTURONASE, ...
Authors:Shimizu, T, Nakatsu, T, Miyairi, K, Okuno, T, Kato, H.
Deposit date:2001-10-10
Release date:2002-06-05
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (0.96 Å)
Cite:Active-site architecture of endopolygalacturonase I from Stereum purpureum revealed by crystal structures in native and ligand-bound forms at atomic resolution.
Biochemistry, 41, 2002
5D4I
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BU of 5d4i by Molmil
Intact nitrite complex of a copper nitrite reductase determined by serial femtosecond crystallography
Descriptor: COPPER (II) ION, Copper-containing nitrite reductase, NITRITE ION
Authors:Fukuda, Y, Tse, K.M, Nakane, T, Nakatsu, T, Suzuki, M, Sugahara, M, Inoue, S, Masuda, T, Yumoto, F, Matsugaki, N, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Murphy, M.E.P, Inoue, T, Iwata, S, Mizohata, E.
Deposit date:2015-08-07
Release date:2016-03-09
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
5D4H
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BU of 5d4h by Molmil
High-resolution nitrite complex of a copper nitrite reductase determined by synchrotron radiation crystallography
Descriptor: ACETIC ACID, COPPER (II) ION, Copper-containing nitrite reductase, ...
Authors:Fukuda, Y, Tse, K.M, Nakane, T, Nakatsu, T, Suzuki, M, Sugahara, M, Inoue, S, Masuda, T, Yumoto, F, Matsugaki, N, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Murphy, M.E.P, Inoue, T, Iwata, S, Mizohata, E.
Deposit date:2015-08-07
Release date:2016-03-09
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
5F7A
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BU of 5f7a by Molmil
Nitrite complex structure of copper nitrite reductase from Alcaligenes faecalis determined at 293 K
Descriptor: COPPER (II) ION, Copper-containing nitrite reductase, NITRITE ION
Authors:Fukuda, Y, Tse, K.M, Nakane, T, Nakatsu, T, Suzuki, M, Sugahara, M, Inoue, S, Masuda, T, Yumoto, F, Matsugaki, N, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Murphy, M.E.P, Inoue, T, Iwata, S, Mizohata, E.
Deposit date:2015-12-07
Release date:2016-03-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
5F7B
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BU of 5f7b by Molmil
Resting state structure of CuNiR form Alcaligenes faecalis determined at 293 K
Descriptor: COPPER (II) ION, Copper-containing nitrite reductase
Authors:Fukuda, Y, Tse, K.M, Nakane, T, Nakatsu, T, Suzuki, M, Sugahara, M, Inoue, S, Masuda, T, Yumoto, F, Matsugaki, N, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Murphy, M.E.P, Inoue, T, Iwata, S, Mizohata, E.
Deposit date:2015-12-07
Release date:2016-03-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
5D9B
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BU of 5d9b by Molmil
Luciferin-regenerating enzyme solved by SIRAS using XFEL (refined against native data)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Luciferin regenerating enzyme, MAGNESIUM ION
Authors:Yamashita, K, Pan, D, Okuda, T, Murai, T, Kodan, A, Yamaguchi, T, Gomi, K, Kajiyama, N, Kato, H, Ago, H, Yamamoto, M, Nakatsu, T.
Deposit date:2015-08-18
Release date:2015-09-23
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:An isomorphous replacement method for efficient de novo phasing for serial femtosecond crystallography.
Sci Rep, 5, 2015

 

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