Author results

1TAF
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DROSOPHILA TBP ASSOCIATED FACTORS DTAFII42/DTAFII62 HETEROTETRAMER
Descriptor:TFIID TBP ASSOCIATED FACTOR 42, TFIID TBP ASSOCIATED FACTOR 62, ZINC ION
Authors:Xie, X., Kokubo, T., Cohen, S.L., Mirza, U.A., Hoffmann, A., Chait, B.T., Roeder, R.G., Nakatani, Y., Burley, S.K.
Deposit date:1996-06-01
Release date:1996-12-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural similarity between TAFs and the heterotetrameric core of the histone octamer.
Nature, 380, 1996
1BO4
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CRYSTAL STRUCTURE OF A GCN5-RELATED N-ACETYLTRANSFERASE: SERRATIA MARESCENS AMINOGLYCOSIDE 3-N-ACETYLTRANSFERASE
Descriptor:PROTEIN (SERRATIA MARCESCENS AMINOGLYCOSIDE-3-N-ACETYLTRANSFERASE), SPERMIDINE, COENZYME A
Authors:Wolf, E., Vassilev, A., Makino, Y., Sali, A., Nakatani, Y., Burley, S.K.
Deposit date:1998-08-08
Release date:1998-10-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of a GCN5-related N-acetyltransferase: Serratia marcescens aminoglycoside 3-N-acetyltransferase.
Cell(Cambridge,Mass.), 94, 1998
1TBA
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SOLUTION STRUCTURE OF A TBP-TAFII230 COMPLEX: PROTEIN MIMICRY OF THE MINOR GROOVE SURFACE OF THE TATA BOX UNWOUND BY TBP, NMR, 25 STRUCTURES
Descriptor:TRANSCRIPTION INITIATION FACTOR IID 230K CHAIN, TRANSCRIPTION INITIATION FACTOR TFIID
Authors:Liu, D., Ishima, R., Tong, K.I., Bagby, S., Kokubo, T., Muhandiram, D.R., Kay, L.E., Nakatani, Y., Ikura, M.
Deposit date:1998-08-16
Release date:1999-08-16
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of a TBP-TAF(II)230 complex: protein mimicry of the minor groove surface of the TATA box unwound by TBP.
Cell(Cambridge,Mass.), 94, 1998
2PC8
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E292Q MUTANT OF EXO-B-(1,3)-GLUCANASE FROM CANDIDA ALBICANS IN COMPLEX WITH TWO SEPARATELY BOUND GLUCOPYRANOSIDE UNITS AT 1.8 A
Descriptor:Hypothetical protein XOG1, BETA-D-GLUCOSE
Authors:Cutfield, S.M., Cutfield, J.F., Patrick, W.M.
Deposit date:2007-03-29
Release date:2008-04-01
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Carbohydrate binding sites in Candida albicans exo-beta-1,3-glucanase and the role of the Phe-Phe 'clamp' at the active site entrance.
Febs J., 277, 2010
2PF0
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F258I MUTANT OF EXO-B-(1,3)-GLUCANASE FROM CANDIDA ALBICANS AT 1.9 A
Descriptor:Hypothetical protein XOG1
Authors:Cutfield, S.M., Cutfield, J.F., Patrick, W.M.
Deposit date:2007-04-03
Release date:2008-04-01
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Carbohydrate binding sites in Candida albicans exo-beta-1,3-glucanase and the role of the Phe-Phe 'clamp' at the active site entrance.
Febs J., 277, 2010
3EI1
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STRUCTURE OF HSDDB1-DRDDB2 BOUND TO A 14 BP 6-4 PHOTOPRODUCT CONTAINING DNA-DUPLEX
Descriptor:DNA damage-binding protein 1, DNA damage-binding protein 2, 5'-D(*DAP*DCP*DGP*DCP*DGP*DAP*(64T)P*(5PY)P*DGP*DCP*DGP*DCP*DCP*DC)-3', ...
Authors:Scrima, A., Thoma, N.H.
Deposit date:2008-09-15
Release date:2009-01-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis of UV DNA-damage recognition by the DDB1-DDB2 complex.
Cell(Cambridge,Mass.), 135, 2008
3EI2
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STRUCTURE OF HSDDB1-DRDDB2 BOUND TO A 16 BP ABASIC SITE CONTAINING DNA-DUPLEX
Descriptor:DNA damage-binding protein 1, DNA damage-binding protein 2, 5'-D(*DAP*DAP*DAP*DTP*DGP*DAP*DAP*DTP*(3DR)P*DAP*DAP*DGP*DCP*DAP*DGP*DG)-3', ...
Authors:Scrima, A., Thoma, N.H.
Deposit date:2008-09-15
Release date:2009-01-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis of UV DNA-damage recognition by the DDB1-DDB2 complex.
Cell(Cambridge,Mass.), 135, 2008
3EI3
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STRUCTURE OF THE HSDDB1-DRDDB2 COMPLEX
Descriptor:DNA damage-binding protein 1, DNA damage-binding protein 2, TETRAETHYLENE GLYCOL
Authors:Scrima, A., Thoma, N.H.
Deposit date:2008-09-15
Release date:2009-01-20
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis of UV DNA-damage recognition by the DDB1-DDB2 complex.
Cell(Cambridge,Mass.), 135, 2008
3EI4
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STRUCTURE OF THE HSDDB1-HSDDB2 COMPLEX
Descriptor:DNA damage-binding protein 1, DNA damage-binding protein 2
Authors:Scrima, A., Pavletich, N.P., Thoma, N.H.
Deposit date:2008-09-15
Release date:2009-01-20
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural basis of UV DNA-damage recognition by the DDB1-DDB2 complex.
Cell(Cambridge,Mass.), 135, 2008
3F95
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CRYSTAL STRUCTURE OF EXTRA C-TERMINAL DOMAIN (X) OF EXO-1,3/1,4-BETA-GLUCANASE (EXOP) FROM PSEUDOALTEROMONAS SP. BB1
Descriptor:Beta-glucosidase, CHLORIDE ION
Authors:Nakatani, Y., Cutfield, S.M., Cutfield, J.F.
Deposit date:2008-11-13
Release date:2009-11-17
Last modified:2011-12-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure and activity of exo-1,3/1,4-beta-glucanase from marine bacterium Pseudoalteromonas sp. BB1 showing a novel C-terminal domain
Febs J., 2011
3I4I
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CRYSTAL STRUCTURE OF A PROKARYOTIC BETA-1,3-1,4-GLUCANASE (LICHENASE) DERIVED FROM A MOUSE HINDGUT METAGENOME
Descriptor:1,3-1,4-beta-glucanase, CALCIUM ION
Authors:Nakatani, Y., Nalder, T.D., Tannock, G.W., Cutfield, J.F., Jack, R.W., Carne, A.
Deposit date:2009-07-01
Release date:2010-07-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Crystal structure of a prokaryotic beta-1,3-1,4-glucanase (lichenase) derived from a mouse hindgut metagenome
To be Published
3N9K
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F229A/E292S DOUBLE MUTANT OF EXO-BETA-1,3-GLUCANASE FROM CANDIDA ALBICANS IN COMPLEX WITH LAMINARITRIOSE AT 1.7 A
Descriptor:Glucan 1,3-beta-glucosidase, CALCIUM ION, BETA-D-GLUCOSE
Authors:Nakatani, Y., Cutfield, S.M., Cutfield, J.F.
Deposit date:2010-05-30
Release date:2010-09-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Carbohydrate binding sites in Candida albicans exo-beta-1,3-glucanase and the role of the Phe-Phe 'clamp' at the active site entrance
Febs J., 277, 2010
3O6A
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F144Y/F258Y DOUBLE MUTANT OF EXO-BETA-1,3-GLUCANASE FROM CANDIDA ALBICANS AT 2 A
Descriptor:Glucan 1,3-beta-glucosidase
Authors:Nakatani, Y., Cutfield, S.M., Cutfield, J.F.
Deposit date:2010-07-28
Release date:2010-09-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Carbohydrate binding sites in Candida albicans exo-beta-1,3-glucanase and the role of the Phe-Phe 'clamp' at the active site entrance
Febs J., 277, 2010
3RRX
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CRYSTAL STRUCTURE OF Q683A MUTANT OF EXO-1,3/1,4-BETA-GLUCANASE (EXOP) FROM PSEUDOALTEROMONAS SP. BB1
Descriptor:Exo-1,3/1,4-beta-glucanase, CALCIUM ION, SODIUM ION, ...
Authors:Nakatani, Y., Cutfield, S.M., Cutfield, J.F.
Deposit date:2011-05-01
Release date:2011-12-21
Last modified:2014-03-12
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure and activity of exo-1,3/1,4-beta-glucanase from marine bacterium Pseudoalteromonas sp. BB1 showing a novel C-terminal domain
Febs J., 279, 2012
3USZ
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CRYSTAL STRUCTURE OF TRUNCATED EXO-1,3/1,4-BETA-GLUCANASE (EXOP) FROM PSEUDOALTEROMONAS SP. BB1
Descriptor:Exo-1,3/1,4-beta-glucanase, CALCIUM ION, SODIUM ION, ...
Authors:Nakatani, Y., Cutfield, S.M., Cutfield, J.F.
Deposit date:2011-11-24
Release date:2011-12-21
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure and activity of exo-1,3/1,4-beta-glucanase from marine bacterium Pseudoalteromonas sp. BB1 showing a novel C-terminal domain
Febs J., 2011
3UT0
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CRYSTAL STRUCTURE OF EXO-1,3/1,4-BETA-GLUCANASE (EXOP) FROM PSEUDOALTEROMONAS SP. BB1
Descriptor:Exo-1,3/1,4-beta-glucanase, CALCIUM ION, SODIUM ION, ...
Authors:Nakatani, Y., Cutfield, S.M., Cutfield, J.F.
Deposit date:2011-11-24
Release date:2011-12-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure and activity of exo-1,3/1,4-beta-glucanase from marine bacterium Pseudoalteromonas sp. BB1 showing a novel C-terminal domain
Febs J., 2011
4IC2
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CRYSTAL STRUCTURE OF THE XIAP RING DOMAIN
Descriptor:E3 ubiquitin-protein ligase XIAP, ZINC ION, NICKEL (II) ION
Authors:Linke, K., Nakatani, Y., Day, C.L.
Deposit date:2012-12-09
Release date:2012-12-19
Last modified:2013-07-10
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Regulation of ubiquitin transfer by XIAP, a dimeric RING E3 ligase
Biochem.J., 450, 2013
4IC3
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CRYSTAL STRUCTURE OF THE F495L MUTANT XIAP RING DOMAIN
Descriptor:E3 ubiquitin-protein ligase XIAP, ZINC ION, NICKEL (II) ION
Authors:Nakatani, Y., Day, C.L.
Deposit date:2012-12-09
Release date:2012-12-19
Last modified:2013-07-10
Method:X-RAY DIFFRACTION (1.783 Å)
Cite:Regulation of ubiquitin transfer by XIAP, a dimeric RING E3 ligase
Biochem.J., 450, 2013
4KQ6
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PRODUCT COMPLEX OF LUMAZINE SYNTHASE FROM CANDIDA GLABRATA
Descriptor:6,7-dimethyl-8-ribityllumazine synthase, SULFATE ION, 1-deoxy-1-(6,7-dimethyl-2,4-dioxo-3,4-dihydropteridin-8(2H)-yl)-D-ribitol, ...
Authors:Shankar, M., Wilbanks, S.M., Nakatani, Y., Monk, B.C., Tyndall, J.D.A.
Deposit date:2013-05-14
Release date:2013-05-29
Last modified:2013-08-28
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Catalysis product captured in lumazine synthase from the fungal pathogen Candida glabrata.
Acta Crystallogr.,Sect.D, 69, 2013
4NWZ
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STRUCTURE OF BACTERIAL TYPE II NADH DEHYDROGENASE FROM CALDALKALIBACILLUS THERMARUM AT 2.5A RESOLUTION
Descriptor:FAD-dependent pyridine nucleotide-disulfide oxidoreductase, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Nakatani, Y., Heikal, A., Lott, J.S., Sazanov, L.A., Baker, E.N., Cook, G.M.
Deposit date:2013-12-07
Release date:2014-02-19
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of the bacterial type II NADH dehydrogenase: a monotopic membrane protein with an essential role in energy generation.
Mol.Microbiol., 2014
3WNR
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MULTIPLE BINDING MODES OF BENZYL ISOTHIOCYANATE INHIBITOR COMPLEXED WITH MACROPHAGE MIGRATION INHIBITORY FACTOR
Descriptor:Macrophage migration inhibitory factor, N-benzylthioformamide, SULFATE ION, ...
Authors:Spencer, E.S., Dale, E.J., Gommans, A.L., Rutledge, M.T., Gamble, A.B., Smith, R.A.J., Wilbanks, S.M., Hampton, M.B., Tyndall, J.D.A.
Deposit date:2013-12-16
Release date:2014-03-05
Last modified:2015-04-01
Method:X-RAY DIFFRACTION (2.008 Å)
Cite:Multiple binding modes of isothiocyanates that inhibit macrophage migration inhibitory factor
Eur.J.Med.Chem., 93, 2015
3WNS
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ALLYL ISOTHIOCYANATE INHIBITOR COMPLEXED WITH MACROPHAGE MIGRATION INHIBITORY FACTOR
Descriptor:Macrophage migration inhibitory factor, N-prop-2-en-1-ylthioformamide, SULFATE ION, ...
Authors:Spencer, E.S., Dale, E.J., Gommans, A.L., Rutledge, M.T., Gamble, A.B., Smith, R.A.J., Wilbanks, S.M., Hampton, M.B., Tyndall, J.D.A.
Deposit date:2013-12-16
Release date:2014-03-05
Last modified:2015-04-01
Method:X-RAY DIFFRACTION (1.658 Å)
Cite:Multiple binding modes of isothiocyanates that inhibit macrophage migration inhibitory factor
Eur.J.Med.Chem., 93, 2015
3WNT
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MULTIPLE BINDING MODES OF BENZYL ISOTHIOCYANATE INHIBITOR COMPLEXED WITH MACROPHAGE MIGRATION INHIBITORY FACTOR
Descriptor:Macrophage migration inhibitory factor, N-benzylthioformamide, SULFATE ION, ...
Authors:Spencer, E.S., Dale, E.J., Gommans, A.L., Rutledge, M.T., Gamble, A.B., Smith, R.A.J., Wilbanks, S.M., Hampton, M.B., Tyndall, J.D.A.
Deposit date:2013-12-16
Release date:2014-03-05
Last modified:2015-04-01
Method:X-RAY DIFFRACTION (2.074 Å)
Cite:Multiple binding modes of isothiocyanates that inhibit macrophage migration inhibitory factor
Eur.J.Med.Chem., 93, 2015
4OYQ
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(6-ISOTHIOCYANATOHEXYL)BENZENE INHIBITOR COMPLEXED WITH MACROPHAGE MIGRATION INHIBITORY FACTOR
Descriptor:Macrophage migration inhibitory factor, 6-isothiocyanatohexylbenzene, SULFATE ION, ...
Authors:Spencer, E.S., Dale, E.J., Gommans, A.L., Vo, C.T., Rutledge, M.T., Nakatani, Y., Gamble, A.B., Smith, R.A.J., Wilbanks, S.M., Hampton, M.B., Tyndall, J.D.A.
Deposit date:2014-02-12
Release date:2014-03-05
Last modified:2014-08-06
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:To be published
To be published
4OSF
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4-(2-ISOTHIOCYANATOETHYL)PHENOL INHIBITOR COMPLEXED WITH MACROPHAGE MIGRATION INHIBITORY FACTOR
Descriptor:Macrophage migration inhibitory factor, N-[2-(4-hydroxyphenyl)ethyl]thioformamide, SULFATE ION, ...
Authors:Spencer, E.S., Dale, E.J., Gommans, A.L., Vo, C.T., Rutledge, M.T., Nakatani, Y., Gamble, A.B., Smith, R.A.J., Wilbanks, S.M., Hampton, M.B., Tyndall, J.D.A.
Deposit date:2014-02-12
Release date:2014-03-12
Last modified:2015-04-01
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Multiple binding modes of isothiocyanates that inhibit macrophage migration inhibitory factor
Eur.J.Med.Chem., 93, 2015
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