Author results

6Q45
  • Download 6q45
  • View 6q45
Molmil generated image of 6q45
F1-ATPASE FROM FUSOBACTERIUM NUCLEATUM
Descriptor:ATP synthase subunit alpha, ATP synthase subunit beta, ATP synthase gamma chain, ...
Authors:Petri, J., Nakatani, Y., Montgomery, M.G., Ferguson, S.A., Aragao, D., Leslie, A.G.W., Heikal, A., Walker, J.E., Cook, G.M.
Deposit date:2018-12-05
Release date:2019-07-10
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Structure of F1-ATPase from the obligate anaerobe Fusobacterium nucleatum.
Open Biology, 9, 2019
6BDO
  • Download 6bdo
  • View 6bdo
Molmil generated image of 6bdo
STRUCTURE OF BACTERIAL TYPE II NADH DEHYDROGENASE FROM CALDALKALIBACILLUS THERMARUM COMPLEXED WITH A QUINONE INHIBITOR HQNO AT 2.8A RESOLUTION
Descriptor:FAD-dependent pyridine nucleotide-disulfide oxidoreductase, FLAVIN-ADENINE DINUCLEOTIDE, 2-HEPTYL-4-HYDROXY QUINOLINE N-OXIDE
Authors:Cook, G.M., Aragao, D., Nakatani, Y.
Deposit date:2017-10-23
Release date:2018-05-16
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of the NDH-2 - HQNO inhibited complex provides molecular insight into quinone-binding site inhibitors.
Biochim. Biophys. Acta, 1859, 2018
5WED
  • Download 5wed
  • View 5wed
Molmil generated image of 5wed
STRUCTURE OF BACTERIAL TYPE II NADH DEHYDROGENASE FROM CALDALKALIBACILLUS THERMARUM AT 2.15A RESOLUTION
Descriptor:FAD-dependent pyridine nucleotide-disulfide oxidoreductase, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Nakatani, Y., Aragao, D., Cook, G.M.
Deposit date:2017-07-09
Release date:2017-10-18
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structure of type II NADH:quinone oxidoreductase from Caldalkalibacillus thermarum with an improved resolution of 2.15 angstrom.
Acta Crystallogr F Struct Biol Commun, 73, 2017
5KMS
  • Download 5kms
  • View 5kms
Molmil generated image of 5kms
THE STRUCTURE OF TYPE II NADH DEHYDROGENASE FROM CALDALKALIBACILLUS THERMARUM COMPLEXED WITH NAD+ AT 2.5 ANGSTROM RESOLUTION.
Descriptor:FAD-dependent pyridine nucleotide-disulfide oxidoreductase, FLAVIN-ADENINE DINUCLEOTIDE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Cook, G.M., Aragao, D., Nakatani, Y.
Deposit date:2016-06-27
Release date:2017-02-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The mechanism of catalysis by type-II NADH:quinone oxidoreductases.
Sci Rep, 7, 2017
5KMR
  • Download 5kmr
  • View 5kmr
Molmil generated image of 5kmr
THE STRUCTURE OF TYPE II NADH DEHYDROGENASE FROM CALDALKALIBACILLUS THERMARUM COMPLEXED WITH NAD+ AT 3.0 ANGSTROM RESOLUTION.
Descriptor:FAD-dependent pyridine nucleotide-disulfide oxidoreductase, FLAVIN-ADENINE DINUCLEOTIDE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Cook, G.M., Aragao, D., Nakatani, Y.
Deposit date:2016-06-27
Release date:2017-01-25
Method:X-RAY DIFFRACTION (3 Å)
Cite:The mechanism of catalysis by type-II NADH:quinone oxidoreductases.
Sci Rep, 7, 2017
5KMQ
  • Download 5kmq
  • View 5kmq
Molmil generated image of 5kmq
THE STRUCTURE OF I379E VARIANT OF TYPE II NADH DEHYDROGENASE FROM CALDALKALIBACILLUS THERMARUM
Descriptor:FAD-dependent pyridine nucleotide-disulfide oxidoreductase, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Cook, G.M., Aragao, D., Nakatani, Y.
Deposit date:2016-06-27
Release date:2017-01-25
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The mechanism of catalysis by type-II NADH:quinone oxidoreductases.
Sci Rep, 7, 2017
5KMP
  • Download 5kmp
  • View 5kmp
Molmil generated image of 5kmp
THE STRUCTURE OF G164E VARIANT OF TYPE II NADH DEHYDROGENASE FROM CALDALKALIBACILLUS THERMARUM
Descriptor:FAD-dependent pyridine nucleotide-disulfide oxidoreductase, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Cook, G.M., Aragao, D., Nakatani, Y.
Deposit date:2016-06-27
Release date:2017-01-25
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:The mechanism of catalysis by type-II NADH:quinone oxidoreductases.
Sci Rep, 7, 2017
5IJW
  • Download 5ijw
  • View 5ijw
Molmil generated image of 5ijw
GLUTAMATE RACEMASE (MURI) FROM MYCOBACTERIUM SMEGMATIS WITH BOUND D-GLUTAMATE, 1.8 ANGSTROM RESOLUTION, X-RAY DIFFRACTION
Descriptor:Glutamate racemase, D-GLUTAMIC ACID, IODIDE ION
Authors:Poen, S., Nakatani, Y., Krause, K.
Deposit date:2016-03-02
Release date:2016-05-25
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Exploring the structure of glutamate racemase from Mycobacterium tuberculosis as a template for anti-mycobacterial drug discovery.
Biochem. J., 473, 2016
5HJ7
  • Download 5hj7
  • View 5hj7
Molmil generated image of 5hj7
GLUTAMATE RACEMASE MYCOBACTERIUM TUBERCULOSIS (MURI) WITH BOUND D-GLUTAMATE, 2.3 ANGSTROM RESOLUTION, X-RAY DIFFRACTION
Descriptor:Glutamate racemase, D-GLUTAMIC ACID
Authors:Poen, S., Nakatani, Y., Krause, K.
Deposit date:2016-01-12
Release date:2016-05-25
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Exploring the structure of glutamate racemase from Mycobacterium tuberculosis as a template for anti-mycobacterial drug discovery.
Biochem. J., 473, 2016
5FCL
  • Download 5fcl
  • View 5fcl
Molmil generated image of 5fcl
CRYSTAL STRUCTURE OF CAS1 FROM PECTOBACTERIUM ATROSEPTICUM
Descriptor:CRISPR-associated endonuclease Cas1
Authors:Wilkinson, M.E., Nakatani, Y., Opel-Reading, H.K., Fineran, P.C., Krause, K.L.
Deposit date:2015-12-15
Release date:2016-03-16
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural plasticity and in vivo activity of Cas1 from the type I-F CRISPR-Cas system.
Biochem.J., 473, 2016
5CEM
  • Download 5cem
  • View 5cem
Molmil generated image of 5cem
PSEUDOKINASE AND C-TERMINAL EXTENSION OF HUMAN TRIBBLES HOMOLOG 1
Descriptor:Tribbles homolog 1, SULFATE ION
Authors:Mace, P.D., Nakatani, Y.
Deposit date:2015-07-07
Release date:2015-11-11
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Molecular Mechanism of CCAAT-Enhancer Binding Protein Recruitment by the TRIB1 Pseudokinase.
Structure, 23, 2015
5CEK
  • Download 5cek
  • View 5cek
Molmil generated image of 5cek
PSEUDOKINASE DOMAIN OF HUMAN TRIBBLES HOMOLOG 1
Descriptor:Tribbles homolog 1
Authors:Mace, P.D., Nakatani, Y.
Deposit date:2015-07-07
Release date:2015-11-11
Last modified:2017-09-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Molecular Mechanism of CCAAT-Enhancer Binding Protein Recruitment by the TRIB1 Pseudokinase.
Structure, 23, 2015
4ZKC
  • Download 4zkc
  • View 4zkc
Molmil generated image of 4zkc
THE CHEMOKINE BINDING PROTEIN OF ORF VIRUS COMPLEXED WITH CCL7
Descriptor:Chemokine binding protein, C-C motif chemokine 7, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Knapp, K.M., Nakatani, Y., Krause, K.L.
Deposit date:2015-04-30
Release date:2015-07-08
Last modified:2018-06-13
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Structures of Orf Virus Chemokine Binding Protein in Complex with Host Chemokines Reveal Clues to Broad Binding Specificity.
Structure, 23, 2015
4ZKB
  • Download 4zkb
  • View 4zkb
Molmil generated image of 4zkb
THE CHEMOKINE BINDING PROTEIN OF ORF VIRUS COMPLEXED WITH CCL3
Descriptor:Chemokine binding protein, C-C motif chemokine 3, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Knapp, K.M., Nakatani, Y., Krause, K.L.
Deposit date:2015-04-30
Release date:2015-07-08
Last modified:2018-06-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structures of Orf Virus Chemokine Binding Protein in Complex with Host Chemokines Reveal Clues to Broad Binding Specificity.
Structure, 23, 2015
4ZK9
  • Download 4zk9
  • View 4zk9
Molmil generated image of 4zk9
THE CHEMOKINE BINDING PROTEIN OF ORF VIRUS COMPLEXED WITH CCL2
Descriptor:Chemokine binding protein, C-C motif chemokine 2, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Knapp, K.M., Nakatani, Y., Krause, K.L.
Deposit date:2015-04-30
Release date:2015-07-08
Last modified:2018-06-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structures of Orf Virus Chemokine Binding Protein in Complex with Host Chemokines Reveal Clues to Broad Binding Specificity.
Structure, 23, 2015
4QHR
  • Download 4qhr
  • View 4qhr
Molmil generated image of 4qhr
THE STRUCTURE OF ALANINE RACEMASE FROM ACINETOBACTER BAUMANNII
Descriptor:Alanine racemase
Authors:Davis, E., Scaletti-Hutchinson, E., Nakatani, Y., Krause, K.L.
Deposit date:2014-05-29
Release date:2015-05-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The structure of alanine racemase from Acinetobacter baumannii
ACTA CRYSTALLOGR.,SECT.F, 70, 2014
4P5I
  • Download 4p5i
  • View 4p5i
Molmil generated image of 4p5i
CRYSTAL STRUCTURE OF THE CHEMOKINE BINDING PROTEIN FROM ORF VIRUS
Descriptor:Chemokine binding protein, N-ACETYL-D-GLUCOSAMINE
Authors:Counago, R.M., Krause, K.L.
Deposit date:2014-03-17
Release date:2015-07-15
Last modified:2018-06-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structures of Orf Virus Chemokine Binding Protein in Complex with Host Chemokines Reveal Clues to Broad Binding Specificity.
Structure, 23, 2015
4OYQ
  • Download 4oyq
  • View 4oyq
Molmil generated image of 4oyq
(6-ISOTHIOCYANATOHEXYL)BENZENE INHIBITOR COMPLEXED WITH MACROPHAGE MIGRATION INHIBITORY FACTOR
Descriptor:Macrophage migration inhibitory factor, 6-isothiocyanatohexylbenzene, SULFATE ION, ...
Authors:Spencer, E.S., Dale, E.J., Gommans, A.L., Vo, C.T., Rutledge, M.T., Nakatani, Y., Gamble, A.B., Smith, R.A.J., Wilbanks, S.M., Hampton, M.B., Tyndall, J.D.A.
Deposit date:2014-02-12
Release date:2014-03-05
Last modified:2014-08-06
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:To be published
To be published
4OSF
  • Download 4osf
  • View 4osf
Molmil generated image of 4osf
4-(2-ISOTHIOCYANATOETHYL)PHENOL INHIBITOR COMPLEXED WITH MACROPHAGE MIGRATION INHIBITORY FACTOR
Descriptor:Macrophage migration inhibitory factor, N-[2-(4-hydroxyphenyl)ethyl]thioformamide, SULFATE ION, ...
Authors:Spencer, E.S., Dale, E.J., Gommans, A.L., Vo, C.T., Rutledge, M.T., Nakatani, Y., Gamble, A.B., Smith, R.A.J., Wilbanks, S.M., Hampton, M.B., Tyndall, J.D.A.
Deposit date:2014-02-12
Release date:2014-03-12
Last modified:2015-04-01
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Multiple binding modes of isothiocyanates that inhibit macrophage migration inhibitory factor
Eur.J.Med.Chem., 93, 2015
4NWZ
  • Download 4nwz
  • View 4nwz
Molmil generated image of 4nwz
STRUCTURE OF BACTERIAL TYPE II NADH DEHYDROGENASE FROM CALDALKALIBACILLUS THERMARUM AT 2.5A RESOLUTION
Descriptor:FAD-dependent pyridine nucleotide-disulfide oxidoreductase, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Nakatani, Y., Heikal, A., Lott, J.S., Sazanov, L.A., Baker, E.N., Cook, G.M.
Deposit date:2013-12-07
Release date:2014-02-19
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of the bacterial type II NADH dehydrogenase: a monotopic membrane protein with an essential role in energy generation.
Mol.Microbiol., 2014
4M82
  • Download 4m82
  • View 4m82
Molmil generated image of 4m82
THE STRUCTURE OF E292S GLYCOSYNTHASE VARIANT OF EXO-1,3-BETA-GLUCANASE FROM CANDIDA ALBICANS COMPLEXED WITH P-NITROPHENYL-GENTIOBIOSIDE (PRODUCT) AT 1.6A RESOLUTION
Descriptor:EXO-1,3-BETA-GLUCANASE, 4-nitrophenyl 6-O-beta-D-glucopyranosyl-beta-D-glucopyranoside, BETA-D-GLUCOSE, ...
Authors:Nakatani, Y., Cutfield, S.M., Larsen, D.S., Cutfield, J.F.
Deposit date:2013-08-12
Release date:2014-06-25
Method:X-RAY DIFFRACTION (1.592 Å)
Cite:Major Change in Regiospecificity for the Exo-1,3-beta-glucanase from Candida albicans following Its Conversion to a Glycosynthase.
Biochemistry, 53, 2014
4M81
  • Download 4m81
  • View 4m81
Molmil generated image of 4m81
THE STRUCTURE OF E292S GLYCOSYNTHASE VARIANT OF EXO-1,3-BETA-GLUCANASE FROM CANDIDA ALBICANS COMPLEXED WITH 1-FLUORO-ALPHA-D-GLUCOPYRANOSIDE (DONOR) AND P-NITROPHENYL BETA-D-GLUCOPYRANOSIDE (ACCEPTOR) AT 1.86A RESOLUTION
Descriptor:EXO-1,3-BETA-GLUCANASE, 1-FLUORO-ALPHA-1-DEOXY-D-GLUCOSE, 4-nitrophenyl beta-D-glucopyranoside, ...
Authors:Nakatani, Y., Cutfield, S.M., Larsen, D.S., Cutfield, J.F.
Deposit date:2013-08-12
Release date:2014-06-25
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Major Change in Regiospecificity for the Exo-1,3-beta-glucanase from Candida albicans following Its Conversion to a Glycosynthase.
Biochemistry, 53, 2014
4M80
  • Download 4m80
  • View 4m80
Molmil generated image of 4m80
THE STRUCTURE OF E292S GLYCOSYNTHASE VARIANT OF EXO-1,3-BETA-GLUCANASE FROM CANDIDA ALBICANS AT 1.85A RESOLUTION
Descriptor:EXO-1,3-BETA-GLUCANASE
Authors:Nakatani, Y., Cutfield, S.M., Larsen, D.S., Cutfield, J.F.
Deposit date:2013-08-12
Release date:2014-06-25
Method:X-RAY DIFFRACTION (1.858 Å)
Cite:Major Change in Regiospecificity for the Exo-1,3-beta-glucanase from Candida albicans following Its Conversion to a Glycosynthase.
Biochemistry, 53, 2014
4KQ6
  • Download 4kq6
  • View 4kq6
Molmil generated image of 4kq6
PRODUCT COMPLEX OF LUMAZINE SYNTHASE FROM CANDIDA GLABRATA
Descriptor:6,7-dimethyl-8-ribityllumazine synthase, SULFATE ION, 1-deoxy-1-(6,7-dimethyl-2,4-dioxo-3,4-dihydropteridin-8(2H)-yl)-D-ribitol, ...
Authors:Shankar, M., Wilbanks, S.M., Nakatani, Y., Monk, B.C., Tyndall, J.D.A.
Deposit date:2013-05-14
Release date:2013-05-29
Last modified:2013-08-28
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Catalysis product captured in lumazine synthase from the fungal pathogen Candida glabrata.
Acta Crystallogr.,Sect.D, 69, 2013
4IC3
  • Download 4ic3
  • View 4ic3
Molmil generated image of 4ic3
CRYSTAL STRUCTURE OF THE F495L MUTANT XIAP RING DOMAIN
Descriptor:E3 ubiquitin-protein ligase XIAP, ZINC ION, NICKEL (II) ION
Authors:Nakatani, Y., Day, C.L.
Deposit date:2012-12-09
Release date:2012-12-19
Last modified:2013-07-10
Method:X-RAY DIFFRACTION (1.783 Å)
Cite:Regulation of ubiquitin transfer by XIAP, a dimeric RING E3 ligase
Biochem.J., 450, 2013
<12>