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4CDO
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BU of 4cdo by Molmil
Crystal structure of PQBP1 bound to spliceosomal U5-15kD
Descriptor: THIOREDOXIN-LIKE PROTEIN 4A, POLYGLUTAMINE-BINDING PROTEIN
Authors:Mizuguchi, M, Obita, T, Serita, T, Kojima, R, Nabeshima, Y, Okazawa, H.
Deposit date:2013-11-05
Release date:2014-04-30
Last modified:2014-05-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mutations in the Pqbp1 Gene Prevent its Interaction with the Spliceosomal Protein U5-15Kd.
Nat.Commun., 5, 2014
4BWS
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BU of 4bws by Molmil
Crystal structure of the heterotrimer of PQBP1, U5-15kD and U5-52kD.
Descriptor: CD2 ANTIGEN CYTOPLASMIC TAIL-BINDING PROTEIN 2, POLYGLUTAMINE-BINDING PROTEIN 1, THIOREDOXIN-LIKE PROTEIN 4A
Authors:Mizuguchi, M, Obita, T, Serita, T, Kojima, R, Morimoto, T, Nabeshima, Y, Okazawa, H.
Deposit date:2013-07-04
Release date:2014-04-30
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mutations in the Pqbp1 Gene Prevent its Interaction with the Spliceosomal Protein U5-15Kd.
Nat.Commun., 5, 2014
4BWQ
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BU of 4bwq by Molmil
Crystal structure of U5-15kD in a complex with PQBP1
Descriptor: POLYGLUTAMINE-BINDING PROTEIN 1, THIOREDOXIN-LIKE PROTEIN 4A
Authors:Mizuguchi, M, Obita, T, Serita, T, Kojima, R, Morimoto, T, Nabeshima, Y, Okazawa, H.
Deposit date:2013-07-04
Release date:2014-04-30
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Mutations in the Pqbp1 Gene Prevent its Interaction with the Spliceosomal Protein U5-15Kd.
Nat.Commun., 5, 2014
1WO1
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BU of 1wo1 by Molmil
Tachyplesin I in dodecylphosphocholine micelles
Descriptor: Tachyplesin I
Authors:Mizuguchi, M, Kamata, S, Kawabata, S, Fujitani, N, Kawano, K.
Deposit date:2004-08-11
Release date:2005-08-09
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution structure of tachyplesin I in dodecylphosphocholine
to be published
1WO0
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BU of 1wo0 by Molmil
Solution structure of tachyplesin I in H2O
Descriptor: Tachyplesin I
Authors:Mizuguchi, M, Kamata, S, Kawabata, S, Fujitani, N, Kawano, K.
Deposit date:2004-08-11
Release date:2005-08-09
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution structure of tachyplesin I in H2O
to be published
7W9Q
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BU of 7w9q by Molmil
Crystal structure of V30M-TTR in complex with naringenin derivative-14
Descriptor: (2~{R})-2-(3-chloranyl-4-oxidanyl-phenyl)-5,7-bis(oxidanyl)-2,3-dihydrochromen-4-one, CALCIUM ION, Transthyretin
Authors:Katayama, W, Shimane, A, Nabeshima, Y, Yokoyama, T, Mizuguchi, M.
Deposit date:2021-12-10
Release date:2022-12-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.599 Å)
Cite:Chlorinated Naringenin Analogues as Potential Inhibitors of Transthyretin Amyloidogenesis.
J.Med.Chem., 65, 2022
7W9R
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BU of 7w9r by Molmil
Crystal structure of V30M-TTR in complex with naringenin derivative-18
Descriptor: (2~{R})-2-[3,5-bis(chloranyl)-4-oxidanyl-phenyl]-5,7-bis(oxidanyl)-2,3-dihydrochromen-4-one, Transthyretin
Authors:Katayama, W, Shimane, A, Nabeshima, Y, Yokoyama, T, Mizuguchi, M.
Deposit date:2021-12-10
Release date:2022-12-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.997 Å)
Cite:Chlorinated Naringenin Analogues as Potential Inhibitors of Transthyretin Amyloidogenesis.
J.Med.Chem., 65, 2022
8I75
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BU of 8i75 by Molmil
Crystal structure of decarboxylated osteocalcin at pH 2.0
Descriptor: Osteocalcin
Authors:Yokoyama, T, Nabeshima, Y, Obita, T, Mizuguchi, M.
Deposit date:2023-01-31
Release date:2024-01-31
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Crystal structures of decarboxylated osteocalcin and implications for the interaction with its receptor
To Be Published
8I76
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BU of 8i76 by Molmil
Crystal structure of decarboxylated osteocalcin at pH 2.0 without glycerol
Descriptor: Osteocalcin
Authors:Yokoyama, T, Nabeshima, Y, Obita, T, Mizuguchi, M.
Deposit date:2023-01-31
Release date:2024-01-31
Method:X-RAY DIFFRACTION (1.381 Å)
Cite:Crystal structures of decarboxylated osteocalcin and implications for the interaction with its receptor
To Be Published
8I74
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BU of 8i74 by Molmil
Crystal structure of decarboxylated osteocalcin at pH 8.5
Descriptor: Osteocalcin
Authors:Yokoyama, T, Nabeshima, Y, Obita, T, Mizuguchi, M.
Deposit date:2023-01-31
Release date:2024-01-31
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Crystal structures of decarboxylated osteocalcin and implications for the interaction with its receptor
To Be Published
6KGB
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BU of 6kgb by Molmil
Crystal structure of E61K mutated transthyretin
Descriptor: CALCIUM ION, Transthyretin
Authors:Yokoyama, T, Mizuguchi, M.
Deposit date:2019-07-11
Release date:2020-07-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:A low amyloidogenic E61K transthyretin mutation may cause familial amyloid polyneuropathy.
J.Neurochem., 156, 2021
7WL6
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BU of 7wl6 by Molmil
Crystal structure of I73L mutated human transthyretin
Descriptor: MAGNESIUM ION, Transthyretin
Authors:Nakagawa, M, Obita, T, Mizuguchi, M.
Deposit date:2022-01-12
Release date:2022-11-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.418007 Å)
Cite:The hydrophobic residue Leu73 is crucial for the high stability and low aggregation properties of murine transthyretin.
Biochem.J., 479, 2022
4PWG
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BU of 4pwg by Molmil
Crystal structure of V30M mutant human transthyretin complexed with caffeic acid ethyl ester
Descriptor: CALCIUM ION, Transthyretin, ethyl (2E)-3-(3,4-dihydroxyphenyl)prop-2-enoate
Authors:Yokoyama, T, Kosaka, Y, Mizuguchi, M.
Deposit date:2014-03-20
Release date:2014-11-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.798 Å)
Cite:Inhibitory Activities of Propolis and Its Promising Component, Caffeic Acid Phenethyl Ester, against Amyloidogenesis of Human Transthyretin
J.Med.Chem., 57, 2014
4PWK
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BU of 4pwk by Molmil
Crystal structure of V30M mutant human transthyretin complexed with dihydroguaiaretic acid
Descriptor: 4,4'-[(2R,3R)-2,3-dimethylbutane-1,4-diyl]bis(2-methoxyphenol), Transthyretin
Authors:Yokoyama, T, Kosaka, Y, Mizuguchi, M.
Deposit date:2014-03-20
Release date:2014-11-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Inhibitory Activities of Propolis and Its Promising Component, Caffeic Acid Phenethyl Ester, against Amyloidogenesis of Human Transthyretin
J.Med.Chem., 57, 2014
4QRF
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BU of 4qrf by Molmil
Crystal structure of V30M mutant human transthyretin complexed with caffeic acid phenethyl ester
Descriptor: 2-phenylethyl (2E)-3-(3,4-dihydroxyphenyl)prop-2-enoate, Transthyretin
Authors:Yokoyama, T, Kosaka, Y, Mizuguchi, M.
Deposit date:2014-06-30
Release date:2014-11-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Inhibitory Activities of Propolis and Its Promising Component, Caffeic Acid Phenethyl Ester, against Amyloidogenesis of Human Transthyretin
J.Med.Chem., 57, 2014
2MDB
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BU of 2mdb by Molmil
Tachyplesin I in the presence of lipopolysaccharide
Descriptor: Tachyplesin-1
Authors:Kushibiki, T, Kamiya, M, Aizawa, T, Kumaki, Y, Kikukawa, T, Mizuguchi, M, Demura, M, Kawabata, S.I, Kawano, K.
Deposit date:2013-09-09
Release date:2014-02-19
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Interaction between tachyplesin I, an antimicrobial peptide derived from horseshoe crab, and lipopolysaccharide.
Biochim.Biophys.Acta, 1844, 2014
2RTV
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BU of 2rtv by Molmil
Tachyplesin I in water
Descriptor: Tachyplesin-1
Authors:Kushibiki, T, Kamiya, M, Aizawa, T, Kumaki, Y, Kikukawa, T, Mizuguchi, M, Demura, M, Kawabata, S.I, Kawano, K.
Deposit date:2013-09-19
Release date:2014-02-19
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Interaction between tachyplesin I, an antimicrobial peptide derived from horseshoe crab, and lipopolysaccharide.
Biochim.Biophys.Acta, 1844, 2014
4Y9B
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BU of 4y9b by Molmil
Crystal structure of V30M mutated transthyretin in complex with alpha-mangostin
Descriptor: 1,3,6-trihydroxy-7-methoxy-2,8-bis(3-methylbut-2-en-1-yl)-9H-xanthen-9-one, CALCIUM ION, CHLORIDE ION, ...
Authors:Yokoyama, T, Mizuguchi, M.
Deposit date:2015-02-17
Release date:2015-09-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Discovery of gamma-Mangostin as an Amyloidogenesis Inhibitor
Sci Rep, 5, 2015
4Y9F
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BU of 4y9f by Molmil
Crystal structure of V30M mutated transthyretin with bromide in complex with gamma-mangostin
Descriptor: 1,3,6,7-tetrahydroxy-2,8-bis(3-methylbut-2-en-1-yl)-9H-xanthen-9-one, BROMIDE ION, Transthyretin
Authors:Yokoyama, T, Mizuguchi, M.
Deposit date:2015-02-17
Release date:2015-09-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Discovery of gamma-Mangostin as an Amyloidogenesis Inhibitor
Sci Rep, 5, 2015
4Y9E
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BU of 4y9e by Molmil
Crystal structure of V30M mutated transthyretin in complex with gamma-mangostin
Descriptor: 1,3,6,7-tetrahydroxy-2,8-bis(3-methylbut-2-en-1-yl)-9H-xanthen-9-one, CHLORIDE ION, Transthyretin
Authors:Yokoyama, T, Mizuguchi, M.
Deposit date:2015-02-17
Release date:2015-09-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Discovery of gamma-Mangostin as an Amyloidogenesis Inhibitor
Sci Rep, 5, 2015
4Y9C
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BU of 4y9c by Molmil
Crystal structure of V30M mutated transthyretin with bromide in complex with alpha-mangostin
Descriptor: 1,3,6-trihydroxy-7-methoxy-2,8-bis(3-methylbut-2-en-1-yl)-9H-xanthen-9-one, BROMIDE ION, Transthyretin
Authors:Yokoyama, T, Mizuguchi, M.
Deposit date:2015-02-17
Release date:2015-09-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Discovery of gamma-Mangostin as an Amyloidogenesis Inhibitor
Sci Rep, 5, 2015
4Y9G
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BU of 4y9g by Molmil
Crystal structure of V30M mutated transthyretin in complex with 3-isomangostin
Descriptor: 5,9-dihydroxy-8-methoxy-2,2-dimethyl-7-(3-methylbut-2-en-1-yl)-3,4-dihydro-2H,6H-pyrano[3,2-b]xanthen-6-one, Transthyretin
Authors:Yokoyama, T, Mizuguchi, M.
Deposit date:2015-02-17
Release date:2015-09-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Discovery of gamma-Mangostin as an Amyloidogenesis Inhibitor
Sci Rep, 5, 2015
3A5P
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BU of 3a5p by Molmil
Crystal structure of hemagglutinin
Descriptor: Haemagglutinin I
Authors:Watanabe, N, Sakai, N, Nakamura, T, Nabeshima, Y, Kouno, T, Mizuguchi, M, Kawano, K.
Deposit date:2009-08-10
Release date:2010-08-11
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:The Structure of Physarum polycephalum hemagglutinin I suggests a minimal carbohydrate recognition domain of legume lectin fold
J.Mol.Biol., 405, 2011
7CCU
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BU of 7ccu by Molmil
Crystal structure of death-associated protein kinase 1 in complex with resveratrol
Descriptor: Death-associated protein kinase 1, RESVERATROL, SULFATE ION
Authors:Yokoyama, T, Suzuki, R, Mizuguchi, M.
Deposit date:2020-06-18
Release date:2021-01-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.649 Å)
Cite:Crystal structure of death-associated protein kinase 1 in complex with the dietary compound resveratrol.
Iucrj, 8, 2020
7CCV
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BU of 7ccv by Molmil
Crystal structure of death-associated protein kinase 1 in complex with piceatannol
Descriptor: Death-associated protein kinase 1, PICEATANNOL, SULFATE ION
Authors:Yokoyama, T, Suzuki, R, Mizuguchi, M.
Deposit date:2020-06-18
Release date:2021-01-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.753 Å)
Cite:Crystal structure of death-associated protein kinase 1 in complex with the dietary compound resveratrol.
Iucrj, 8, 2020

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