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2B4Q
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BU of 2b4q by Molmil
Pseudomonas aeruginosa RhlG/NADP active-site complex
Descriptor: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase
Authors:Miller, D.J, White, S.W.
Deposit date:2005-09-26
Release date:2006-05-02
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of RhlG, an Essential beta-Ketoacyl Reductase in the Rhamnolipid Biosynthetic Pathway of Pseudomonas aeruginosa.
J.Biol.Chem., 281, 2006
2QV7
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BU of 2qv7 by Molmil
Crystal Structure of Diacylglycerol Kinase DgkB in complex with ADP and Mg
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Diacylglycerol Kinase DgkB, MAGNESIUM ION
Authors:Miller, D.J, Jerga, A, Rock, C.O, White, S.W.
Deposit date:2007-08-07
Release date:2008-06-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Analysis of the Staphylococcus aureus DgkB Structure Reveals a Common Catalytic Mechanism for the Soluble Diacylglycerol Kinases.
Structure, 16, 2008
2QVL
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BU of 2qvl by Molmil
Crystal Structure of Diacylglycerol Kinase
Descriptor: Diacylglycerol Kinase DgkB
Authors:Miller, D.J, Jerga, A, Rock, C.O, White, S.W.
Deposit date:2007-08-08
Release date:2008-06-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Analysis of the Staphylococcus aureus DgkB Structure Reveals a Common Catalytic Mechanism for the Soluble Diacylglycerol Kinases.
Structure, 16, 2008
8G66
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BU of 8g66 by Molmil
Structure with SJ3149
Descriptor: (3S)-3-{5-[(1,2-benzoxazol-3-yl)amino]-1-oxo-1,3-dihydro-2H-isoindol-2-yl}piperidine-2,6-dione, Casein kinase I isoform alpha, DNA damage-binding protein 1, ...
Authors:Miller, D.J, Young, S.M, Fischer, M.
Deposit date:2023-02-14
Release date:2023-12-13
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:Structure of ternary complex with molecular glue targeting CK1A for degradation by the CRL4CRBN ubiquitin ligase
To Be Published
3LSJ
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BU of 3lsj by Molmil
Crystal structure of DesT in complex with palmitoyl-CoA
Descriptor: COENZYME A, DesT, PALMITIC ACID
Authors:Miller, D.J, White, S.W.
Deposit date:2010-02-12
Release date:2010-08-04
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for the transcriptional regulation of membrane lipid homeostasis.
Nat.Struct.Mol.Biol., 17, 2010
3LSR
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BU of 3lsr by Molmil
Crystal structure of DesT in complex with duplex DNA
Descriptor: DNA (27-MER), DesT, SULFATE ION
Authors:Miller, D.J, White, S.W.
Deposit date:2010-02-12
Release date:2010-08-04
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structural basis for the transcriptional regulation of membrane lipid homeostasis.
Nat.Struct.Mol.Biol., 17, 2010
3LSP
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BU of 3lsp by Molmil
Crystal Structure of DesT bound to desCB promoter and oleoyl-CoA
Descriptor: DNA (5'-D(*TP*CP*AP*AP*TP*CP*GP*AP*GP*TP*CP*AP*AP*CP*AP*AP*GP*CP*GP*TP*TP*CP*AP*CP*TP*GP*AP*TP*GP*TP*A)-3'), DNA (5'-D(*TP*TP*AP*CP*AP*TP*CP*AP*GP*TP*GP*AP*AP*CP*GP*CP*TP*TP*GP*TP*TP*GP*AP*CP*TP*CP*GP*AP*TP*TP*G)-3'), DesT, ...
Authors:Miller, D.J, White, S.W.
Deposit date:2010-02-12
Release date:2010-08-04
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:Structural basis for the transcriptional regulation of membrane lipid homeostasis.
Nat.Struct.Mol.Biol., 17, 2010
1IL5
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BU of 1il5 by Molmil
STRUCTURE OF RICIN A CHAIN BOUND WITH INHIBITOR 2,5-DIAMINO-4,6-DIHYDROXYPYRIMIDINE (DDP)
Descriptor: 2,4-DIAMINO-4,6-DIHYDROXYPYRIMIDINE, RICIN A CHAIN
Authors:Miller, D.J, Ravikumar, K, Shen, H, Suh, J.-K, Kerwin, S.M, Robertus, J.D.
Deposit date:2001-05-07
Release date:2002-01-16
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure-based design and characterization of novel platforms for ricin and shiga toxin inhibition.
J.Med.Chem., 45, 2002
1IL3
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BU of 1il3 by Molmil
STRUCTURE OF RICIN A CHAIN BOUND WITH INHIBITOR 7-DEAZAGUANINE
Descriptor: 7-DEAZAGUANINE, RICIN A CHAIN
Authors:Miller, D.J, Ravikumar, K, Shen, H, Suh, J.-K, Kerwin, S.M, Robertus, J.D.
Deposit date:2001-05-07
Release date:2002-01-16
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure-based design and characterization of novel platforms for ricin and shiga toxin inhibition.
J.Med.Chem., 45, 2002
1IL9
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BU of 1il9 by Molmil
STRUCTURE OF RICIN A CHAIN BOUND WITH INHIBITOR 8-METHYL-9-OXOGUANINE
Descriptor: 5-AMINO-2-METHYL-6H-OXAZOLO[5,4-D]PYRIMIDIN-7-ONE, RICIN A CHAIN
Authors:Miller, D.J, Ravikumar, K, Shen, H, Suh, J.-K, Kerwin, S.M, Robertus, J.D.
Deposit date:2001-05-07
Release date:2002-01-16
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure-based design and characterization of novel platforms for ricin and shiga toxin inhibition.
J.Med.Chem., 45, 2002
1IL4
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BU of 1il4 by Molmil
STRUCTURE OF RICIN A CHAIN BOUND WITH INHIBITOR 9-DEAZAGUANINE
Descriptor: 9-DEAZAGUANINE, RICIN A CHAIN
Authors:Miller, D.J, Ravikumar, K, Shen, H, Suh, J.-K, Kerwin, S.M, Robertus, J.D.
Deposit date:2001-05-07
Release date:2002-01-16
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure-based design and characterization of novel platforms for ricin and shiga toxin inhibition.
J.Med.Chem., 45, 2002
1M6Y
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BU of 1m6y by Molmil
Crystal Structure Analysis of TM0872, a Putative SAM-dependent Methyltransferase, Complexed with SAH
Descriptor: S-ADENOSYL-L-HOMOCYSTEINE, S-adenosyl-methyltransferase mraW, SULFATE ION
Authors:Miller, D.J, Anderson, W.F, Midwest Center for Structural Genomics (MCSG)
Deposit date:2002-07-17
Release date:2003-01-28
Last modified:2016-03-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal complexes of a predicted S-adenosylmethionine-dependent methyltransferase reveal a typical AdoMet binding domain and a substrate recognition domain
Protein Sci., 12, 2003
1SU1
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BU of 1su1 by Molmil
Structural and biochemical characterization of Yfce, a phosphoesterase from E. coli
Descriptor: Hypothetical protein yfcE, SULFATE ION, ZINC ION
Authors:Miller, D.J, Shuvalova, L, Evdokimova, E, Savchenko, A, Yakunin, A, Anderson, W.F, Midwest Center for Structural Genomics (MCSG)
Deposit date:2004-03-25
Release date:2004-08-17
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural and biochemical characterization of a novel Mn2+-dependent phosphodiesterase encoded by the yfcE gene.
Protein Sci., 16, 2007
1TT4
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BU of 1tt4 by Molmil
Structure of NP459575, a predicted glutathione synthase from Salmonella typhimurium
Descriptor: MAGNESIUM ION, SULFATE ION, putative cytoplasmic protein
Authors:Miller, D.J, Shuvalova, L, Anderson, W.F, Midwest Center for Structural Genomics (MCSG)
Deposit date:2004-06-21
Release date:2004-08-17
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.801 Å)
Cite:Structure of NP459575, a predicted glutathione synthase from Salmonella typhimurium
To be Published
2GQD
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BU of 2gqd by Molmil
The crystal structure of B-ketoacyl-ACP synthase II (FabF) from Staphylococcus aureus
Descriptor: 3-oxoacyl-[acyl-carrier-protein] synthase 2
Authors:Miller, D.J, White, S.W, Zhang, Y.M, Rock, C.O.
Deposit date:2006-04-20
Release date:2006-05-02
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The crystal structure of B-ketoacyl-ACP synthase II (FabF) from Staphylococcus aureus
To be Published
1N2X
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BU of 1n2x by Molmil
Crystal Structure Analysis of TM0872, a Putative SAM-dependent Methyltransferase, Complexed with SAM
Descriptor: S-ADENOSYLMETHIONINE, S-adenosyl-methyltransferase mraW, SULFATE ION
Authors:Miller, D.J, Anderson, W.F, Midwest Center for Structural Genomics (MCSG)
Deposit date:2002-10-24
Release date:2003-01-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal complexes of a predicted S-adenosylmethionine-dependent methyltransferase reveal a typical AdoMet binding domain and a substrate recognition domain
Protein Sci., 12, 2003
1Q7R
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BU of 1q7r by Molmil
X-ray crystallographic analysis of a predicted amidotransferase from B. stearothermophilus at 1.9 A resolution
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, SULFATE ION, ...
Authors:Miller, D.J, Anderson, W.F, Midwest Center for Structural Genomics (MCSG)
Deposit date:2003-08-19
Release date:2003-11-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:X-ray structure analysis of a predicted amidotransferase from B. stearothermophilus at 1.9 A resolution
To be Published
4XEK
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BU of 4xek by Molmil
Pyk2-FAT domain in complex with leupaxin LD4 motif
Descriptor: 19-mer peptide containing Leupaxin LD4 motif, Protein-tyrosine kinase 2-beta
Authors:Miller, D.J.
Deposit date:2014-12-24
Release date:2015-12-30
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.793 Å)
Cite:Structural Basis for the Interaction between Pyk2-FAT Domain and Leupaxin LD Repeats.
Biochemistry, 55, 2016
4XEV
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BU of 4xev by Molmil
Fusion of Pyk2-FAT domain with Leupaxin LD1 motif, complexed with Leupaxin LD4 peptide
Descriptor: 19-mer peptide containing Leupaxin LD4 motif, Fusion protein of Protein-tyrosine kinase 2-beta FAT domain and Leupaxin LD1 motif
Authors:Miller, D.J.
Deposit date:2014-12-24
Release date:2015-12-30
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.0073 Å)
Cite:Structural Basis for the Interaction between Pyk2-FAT Domain and Leupaxin LD Repeats.
Biochemistry, 55, 2016
4XEF
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BU of 4xef by Molmil
Pyk2-FAT complexed with Leupaxin LD motif LD1
Descriptor: 20-mer peptide containing LD1 motif of leupaxin, Protein-tyrosine kinase 2-beta
Authors:Miller, D.J.
Deposit date:2014-12-23
Release date:2015-12-23
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural Basis for the Interaction between Pyk2-FAT Domain and Leupaxin LD Repeats.
Biochemistry, 55, 2016
6WJH
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BU of 6wjh by Molmil
Crystal structure of MAGE-A11 bound to the PCF11 degron
Descriptor: Fusion protein of PCF11 and MAGE-A11
Authors:Miller, D.J, Huang, X.
Deposit date:2020-04-13
Release date:2020-10-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Structural basis for substrate recognition and chemical inhibition of oncogenic MAGE ubiquitin ligases.
Nat Commun, 11, 2020
6ASR
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BU of 6asr by Molmil
REV1 UBM2 domain complex with ubiquitin
Descriptor: DNA repair protein REV1, NICKEL (II) ION, Ubiquitin
Authors:Miller, D.J.
Deposit date:2017-08-25
Release date:2018-06-20
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.356 Å)
Cite:Structures of REV1 UBM2 Domain Complex with Ubiquitin and with a Small-Molecule that Inhibits the REV1 UBM2-Ubiquitin Interaction.
J. Mol. Biol., 430, 2018
6NJ7
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BU of 6nj7 by Molmil
11-BETA DEHYDROGENASE ISOZYME 1 IN COMPLEX WITH COLLETOIC ACID
Descriptor: (1S,4S,5S,9S)-9-hydroxy-8-methyl-4-(propan-2-yl)spiro[4.5]dec-7-ene-1-carboxylic acid, Corticosteroid 11-beta-dehydrogenase isozyme 1, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Miller, D.J, Rivas, F.
Deposit date:2019-01-02
Release date:2019-07-24
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Mechanistic Insight on the Mode of Action of Colletoic Acid.
J.Med.Chem., 62, 2019
6NXL
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BU of 6nxl by Molmil
Ubiquitin binding variants
Descriptor: Polyubiquitin-B
Authors:Miller, D.J, Watson, E.R.
Deposit date:2019-02-08
Release date:2020-01-15
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.803 Å)
Cite:Protein engineering of a ubiquitin-variant inhibitor of APC/C identifies a cryptic K48 ubiquitin chain binding site.
Proc.Natl.Acad.Sci.USA, 116, 2019
6NXK
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BU of 6nxk by Molmil
Ubiquitin binding variants
Descriptor: Anaphase-promoting complex subunit 2, Polyubiquitin-C
Authors:Miller, D.J, Watson, E.R.
Deposit date:2019-02-08
Release date:2020-01-15
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Protein engineering of a ubiquitin-variant inhibitor of APC/C identifies a cryptic K48 ubiquitin chain binding site.
Proc.Natl.Acad.Sci.USA, 116, 2019

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PDB entries from 2024-03-27

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