Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6FSQ
DownloadVisualize
BU of 6fsq by Molmil
Structure of A3_bGFPD, an artificial bi-domain protein based on two different alphaRep domains : A3 and a GFP binding domain (bGFPD)
Descriptor: MALONATE ION, SODIUM ION, alphaRep A3_bGFPD
Authors:Li de la Sierra-Gallay, I, Leger, C.
Deposit date:2018-02-20
Release date:2018-08-08
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Ligand-induced conformational switch in an artificial bidomain protein scaffold.
Sci Rep, 9, 2019
6HWP
DownloadVisualize
BU of 6hwp by Molmil
Structure of A3_bGFPD, an artificial bi-domain protein based on two different alphaRep domains : A3 and a GFP binding domain (bGFPD)
Descriptor: A3_bGFPD, MALONATE ION, SODIUM ION
Authors:Li de la Sierra-Gallay, I, Leger, C.
Deposit date:2018-10-12
Release date:2018-10-24
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.547 Å)
Cite:Ligand-induced conformational switch in an artificial bidomain protein scaffold.
Sci Rep, 9, 2019
6FT5
DownloadVisualize
BU of 6ft5 by Molmil
Structure of A3_A3, an artificial bi-domain protein based on two identical alphaRep A3 domains
Descriptor: GLYCEROL, SULFATE ION, alphaRep A3_A3
Authors:Li de la Sierra-Gallay, I, Leger, C, Di Meo, T.
Deposit date:2018-02-20
Release date:2018-08-08
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Ligand-induced conformational switch in an artificial bidomain protein scaffold.
Sci Rep, 9, 2019
7PU9
DownloadVisualize
BU of 7pu9 by Molmil
Crystal structure of CaM in complex with CDZ (form 2)
Descriptor: 1-[bis(4-chlorophenyl)methyl]-3-[(2~{R})-2-(2,4-dichlorophenyl)-2-[(2,4-dichlorophenyl)methoxy]ethyl]imidazole, CALCIUM ION, Calmodulin-1
Authors:Mechaly, A.E, Leger, C, Haouz, A, Chenal, A.
Deposit date:2021-09-28
Release date:2022-08-17
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.279 Å)
Cite:Dynamics and structural changes of calmodulin upon interaction with the antagonist calmidazolium.
Bmc Biol., 20, 2022
7PSZ
DownloadVisualize
BU of 7psz by Molmil
Crystal structure of CaM in complex with CDZ (form 1)
Descriptor: 1-[bis(4-chlorophenyl)methyl]-3-[(2~{R})-2-(2,4-dichlorophenyl)-2-[(2,4-dichlorophenyl)methoxy]ethyl]imidazole, CALCIUM ION, Calmodulin-1, ...
Authors:Mechaly, A.E, Leger, C, Haouz, A, Chenal, A.
Deposit date:2021-09-24
Release date:2022-08-17
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.898 Å)
Cite:Dynamics and structural changes of calmodulin upon interaction with the antagonist calmidazolium.
Bmc Biol., 20, 2022
1NEK
DownloadVisualize
BU of 1nek by Molmil
Complex II (Succinate Dehydrogenase) From E. Coli with ubiquinone bound
Descriptor: CALCIUM ION, CARDIOLIPIN, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Yankovskaya, V, Horsefield, R, Tornroth, S, Luna-Chavez, C, Miyoshi, H, Leger, C, Byrne, B, Cecchini, G, Iwata, S.
Deposit date:2002-12-11
Release date:2003-02-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Architecture of succinate dehydrogenase and reactive oxygen species generation.
Science, 299, 2003
1NEN
DownloadVisualize
BU of 1nen by Molmil
Complex II (Succinate Dehydrogenase) From E. Coli with Dinitrophenol-17 inhibitor co-crystallized at the ubiquinone binding site
Descriptor: 2-[1-METHYLHEXYL]-4,6-DINITROPHENOL, CALCIUM ION, CARDIOLIPIN, ...
Authors:Yankovskaya, V, Horsefield, R, Tornroth, S, Luna-Chavez, C, Miyoshi, H, Leger, C, Byrne, B, Cecchini, G, Iwata, S.
Deposit date:2002-12-11
Release date:2003-02-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Architecture of succinate dehydrogenase and reactive oxygen species generation
Science, 299, 2003
4UCW
DownloadVisualize
BU of 4ucw by Molmil
Structure of the T18V small subunit mutant of D. fructosovorans NiFe- hydrogenase
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, GLYCEROL, ...
Authors:Abou-Hamdan, A, Ceccaldi, P, Lebrette, H, Guttierez-Sanz, O, Richaud, P, Cournac, L, Guigliarelli, B, deLacey, A.L, Leger, C, Volbeda, A, Burlat, B, Dementin, S.
Deposit date:2014-12-04
Release date:2015-02-18
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A Threonine Stabilizes the Nic and Nir Catalytic Intermediates of [Nife]-Hydrogenase.
J.Biol.Chem., 290, 2015
4UCX
DownloadVisualize
BU of 4ucx by Molmil
Structure of the T18G small subunit mutant of D. fructosovorans NiFe- hydrogenase
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, GLYCEROL, ...
Authors:Abou-Hamdan, A, Ceccaldi, P, Lebrette, H, Guttierez-Sanz, O, Richaud, P, Cournac, L, Guigliarelli, B, deLacey, A.L, Leger, C, Volbeda, A, Burlat, B, Dementin, S.
Deposit date:2014-12-05
Release date:2015-02-18
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:A threonine stabilizes the NiC and NiR catalytic intermediates of [NiFe]-hydrogenase.
J. Biol. Chem., 290, 2015
4UCQ
DownloadVisualize
BU of 4ucq by Molmil
Structure of the T18D small subunit mutant of D. fructosovorans NiFe- hydrogenase
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, GLYCEROL, ...
Authors:Abou-Hamdan, A, Ceccaldi, P, Lebrette, H, Guttierez-Sanz, O, Richaud, P, Cournac, L, Guigliarelli, B, deLacey, A.L, Leger, C, Volbeda, A, Burlat, B, Dementin, S.
Deposit date:2014-12-04
Release date:2015-02-18
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A threonine stabilizes the NiC and NiR catalytic intermediates of [NiFe]-hydrogenase.
J. Biol. Chem., 290, 2015
4HX5
DownloadVisualize
BU of 4hx5 by Molmil
Crystal structure of 11 beta-HSD1 in complex with SAR184841
Descriptor: 4-[5-(4-tert-butylpiperazin-1-yl)pyridin-2-yl]-N-[(1R,2S,3S,5S,7s)-5-carbamoyltricyclo[3.3.1.1~3,7~]dec-2-yl]-3,4-dihydroquinoxaline-1(2H)-carboxamide, Corticosteroid 11-beta-dehydrogenase isozyme 1, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Loenze, P, Schimanski-Breves, S, Engel, C.K.
Deposit date:2012-11-09
Release date:2013-05-08
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Discovery of SAR184841, a potent and long-lasting inhibitor of 11beta-hydroxysteroid dehydrogenase type 1, active in a physiopathological animal model of T2D
Bioorg.Med.Chem.Lett., 23, 2013
3H3X
DownloadVisualize
BU of 3h3x by Molmil
Structure of the V74M large subunit mutant of NI-FE hydrogenase in an oxidized state
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, GLYCEROL, ...
Authors:Volbeda, A, Martinez, N, Martin, L, Fontecilla-Camps, J.C.
Deposit date:2009-04-17
Release date:2009-07-21
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Introduction of methionines in the gas channel makes [NiFe] hydrogenase aero-tolerant
J.Am.Chem.Soc., 131, 2009
6VX1
DownloadVisualize
BU of 6vx1 by Molmil
Crystal structure of air-exposed C45G/T50C D. vulgaris carbon monoxide dehydrogenase (2 day air exposure)
Descriptor: Carbon monoxide dehydrogenase, Fe(4)-Ni(1)-S(4) cluster, oxidized, ...
Authors:Wittenborn, E.C, Drennan, C.L.
Deposit date:2020-02-20
Release date:2020-07-29
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.78 Å)
Cite:The Solvent-Exposed Fe-S D-Cluster Contributes to Oxygen-Resistance inDesulfovibrio vulgarisNi-Fe Carbon Monoxide Dehydrogenase.
Acs Catalysis, 10, 2020
6VX0
DownloadVisualize
BU of 6vx0 by Molmil
Crystal structure of air-exposed C45G/T50C D. vulgaris carbon monoxide dehydrogenase (2 hour air exposure)
Descriptor: Carbon monoxide dehydrogenase, Fe(4)-Ni(1)-S(4) cluster, oxidized, ...
Authors:Wittenborn, E.C, Drennan, C.L.
Deposit date:2020-02-20
Release date:2020-07-29
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:The Solvent-Exposed Fe-S D-Cluster Contributes to Oxygen-Resistance inDesulfovibrio vulgarisNi-Fe Carbon Monoxide Dehydrogenase.
Acs Catalysis, 10, 2020
6OND
DownloadVisualize
BU of 6ond by Molmil
Crystal structure of Desulfovibrio vulgaris carbon monoxide dehydrogenase produced without CooC, reduced
Descriptor: CHLORIDE ION, Carbon monoxide dehydrogenase, FE (III) ION, ...
Authors:Wittenborn, E.C, Cohen, S.E, Drennan, C.L.
Deposit date:2019-04-21
Release date:2019-07-24
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.723 Å)
Cite:Structural insight into metallocofactor maturation in carbon monoxide dehydrogenase.
J.Biol.Chem., 294, 2019
6DC2
DownloadVisualize
BU of 6dc2 by Molmil
Crystal structure of Desulfovibrio vulgaris carbon monoxide dehydrogenase C301S variant
Descriptor: Carbon monoxide dehydrogenase, FE (III) ION, FE(4)-NI(1)-S(4) CLUSTER, ...
Authors:Wittenborn, E.C, Drennan, C.L.
Deposit date:2018-05-04
Release date:2018-10-03
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.992 Å)
Cite:Redox-dependent rearrangements of the NiFeS cluster of carbon monoxide dehydrogenase.
Elife, 7, 2018
8CM5
DownloadVisualize
BU of 8cm5 by Molmil
W-formate dehydrogenase C872A from Desulfovibrio vulgaris
Descriptor: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE, DI(HYDROXYETHYL)ETHER, Formate dehydrogenase, ...
Authors:Vilela-Alves, G, Mota, C, Klymanska, K, Oliveira, A.R, Manuel, R.R, Pereira, I.C, Romao, M.J.
Deposit date:2023-02-17
Release date:2023-09-27
Last modified:2024-01-03
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:An allosteric redox switch involved in oxygen protection in a CO 2 reductase.
Nat.Chem.Biol., 20, 2024
8CM6
DownloadVisualize
BU of 8cm6 by Molmil
W-formate dehydrogenase C872A from Desulfovibrio vulgaris - with Formamide
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE, CHLORIDE ION, ...
Authors:Vilela-Alves, G, Mota, C, Oliveira, A.R, Manuel, R.R, Pereira, I.C, Romao, M.J.
Deposit date:2023-02-17
Release date:2023-09-27
Last modified:2024-01-03
Method:X-RAY DIFFRACTION (1.416 Å)
Cite:An allosteric redox switch involved in oxygen protection in a CO 2 reductase.
Nat.Chem.Biol., 20, 2024
8CM4
DownloadVisualize
BU of 8cm4 by Molmil
W-formate dehydrogenase C872A from Desulfovibrio vulgaris - exposed to oxygen
Descriptor: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE, DI(HYDROXYETHYL)ETHER, Formate dehydrogenase, ...
Authors:Vilela-Alves, G, Mota, C, Klymanska, K, Oliveira, A.R, Manuel, R.R, Pereira, I.C, Romao, M.J.
Deposit date:2023-02-17
Release date:2023-09-27
Last modified:2024-01-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:An allosteric redox switch involved in oxygen protection in a CO 2 reductase.
Nat.Chem.Biol., 20, 2024
8CM7
DownloadVisualize
BU of 8cm7 by Molmil
W-formate dehydrogenase M405A from Desulfovibrio vulgaris
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE, CHLORIDE ION, ...
Authors:Vilela-Alves, G, Mota, C, Oliveira, A.R, Manuel, R.R, Pereira, I.C, Romao, M.J.
Deposit date:2023-02-17
Release date:2023-09-27
Last modified:2024-01-03
Method:X-RAY DIFFRACTION (2.117 Å)
Cite:An allosteric redox switch involved in oxygen protection in a CO 2 reductase.
Nat.Chem.Biol., 20, 2024
6B6X
DownloadVisualize
BU of 6b6x by Molmil
Crystal structure of Desulfovibrio vulgaris carbon monoxide dehydrogenase, dithionite-reduced (protein batch 2), canonical C-cluster
Descriptor: CHLORIDE ION, Carbon monoxide dehydrogenase, FE(4)-NI(1)-S(4) CLUSTER, ...
Authors:Wittenborn, E.C, Drennan, C.L.
Deposit date:2017-10-03
Release date:2018-10-03
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Redox-dependent rearrangements of the NiFeS cluster of carbon monoxide dehydrogenase.
Elife, 7, 2018
6B6W
DownloadVisualize
BU of 6b6w by Molmil
Crystal structure of Desulfovibrio vulgaris carbon monoxide dehydrogenase, as-isolated (protein batch 2), oxidized C-cluster
Descriptor: CHLORIDE ION, Carbon monoxide dehydrogenase, FE(4)-NI(1)-S(4) CLUSTER, ...
Authors:Wittenborn, E.C, Drennan, C.L.
Deposit date:2017-10-03
Release date:2018-10-03
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Redox-dependent rearrangements of the NiFeS cluster of carbon monoxide dehydrogenase.
Elife, 7, 2018
6B6Y
DownloadVisualize
BU of 6b6y by Molmil
Crystal structure of Desulfovibrio vulgaris carbon monoxide dehydrogenase, dithionite-reduced then oxygen-exposed (protein batch 2), oxidized C-cluster
Descriptor: Carbon monoxide dehydrogenase, FE2/S2 (INORGANIC) CLUSTER, Fe(4)-Ni(1)-S(4) cluster, ...
Authors:Wittenborn, E.C, Drennan, C.L.
Deposit date:2017-10-03
Release date:2018-10-03
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Redox-dependent rearrangements of the NiFeS cluster of carbon monoxide dehydrogenase.
Elife, 7, 2018
6B6V
DownloadVisualize
BU of 6b6v by Molmil
Crystal structure of Desulfovibrio vulgaris carbon monoxide dehydrogenase, as-isolated (protein batch 1), canonical C-cluster
Descriptor: Carbon monoxide dehydrogenase, FE(4)-NI(1)-S(4) CLUSTER, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Wittenborn, E.C, Drennan, C.L.
Deposit date:2017-10-03
Release date:2018-10-03
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Redox-dependent rearrangements of the NiFeS cluster of carbon monoxide dehydrogenase.
Elife, 7, 2018
3QQP
DownloadVisualize
BU of 3qqp by Molmil
Crystal Structure of 11beta-Hydroxysteroid Dehydrogenase 1 (11b-HSD1) in Complex with Urea Inhibitor
Descriptor: 3,4-dihydroquinolin-1(2H)-yl[4-(1H-imidazol-5-yl)piperidin-1-yl]methanone, Corticosteroid 11-beta-dehydrogenase isozyme 1, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Loenze, P, Schimanski-Breves, S, Engel, C.K.
Deposit date:2011-02-16
Release date:2012-02-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:Pyrrolidine-pyrazole ureas as potent and selective inhibitors of 11beta-hydroxysteroid-dehydrogenase type 1.
Bioorg.Med.Chem.Lett., 21, 2011

 

12>

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon