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1YG0
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BU of 1yg0 by Molmil
Solution structure of apo-CopP from Helicobacter pylori
Descriptor: COP associated protein
Authors:Lee, B.J, Park, S.J.
Deposit date:2005-01-04
Release date:2006-01-24
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of apo-CopP from Helicobacter pylori
To be published
7VHV
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BU of 7vhv by Molmil
Crystal structure of S. aureus D-alanine alanyl carrier protein ligase
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, D-alanine--D-alanyl carrier protein ligase, MAGNESIUM ION
Authors:Lee, B.J, Lee, I.-G, Im, H.G, Yoon, H.J.
Deposit date:2021-09-23
Release date:2022-04-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structural and functional analysis of the D-alanyl carrier protein ligase DltA from Staphylococcus aureus Mu50.
Acta Crystallogr D Struct Biol, 78, 2022
4Z1A
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BU of 4z1a by Molmil
Structure of apo form KDO8PS from H.pylori
Descriptor: 2-dehydro-3-deoxyphosphooctonate aldolase
Authors:Lee, B.J, Cho, S, Im, H, Yoon, H.J.
Deposit date:2015-03-27
Release date:2016-03-09
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Identification of novel scaffolds for potential anti-Helicobacter pylori agents based on the crystal structure of H. pylori 3-deoxy-d-manno-octulosonate 8-phosphate synthase (HpKDO8PS).
Eur.J.Med.Chem., 108, 2016
4Z1D
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BU of 4z1d by Molmil
Structure of PEP and zinc bound KDO8PS from H.pylori
Descriptor: 2-dehydro-3-deoxyphosphooctonate aldolase, PHOSPHOENOLPYRUVATE, ZINC ION
Authors:Lee, B.J, Cho, S, Im, H, Yoon, H.J.
Deposit date:2015-03-27
Release date:2016-03-09
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Identification of novel scaffolds for potential anti-Helicobacter pylori agents based on the crystal structure of H. pylori 3-deoxy-d-manno-octulosonate 8-phosphate synthase (HpKDO8PS).
Eur.J.Med.Chem., 108, 2016
4Z1B
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BU of 4z1b by Molmil
Structure of H204A mutant KDO8PS from H.pylori
Descriptor: 2-dehydro-3-deoxyphosphooctonate aldolase
Authors:Lee, B.J, Cho, S, Im, H, Yoon, H.J.
Deposit date:2015-03-27
Release date:2016-03-09
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Identification of novel scaffolds for potential anti-Helicobacter pylori agents based on the crystal structure of H. pylori 3-deoxy-d-manno-octulosonate 8-phosphate synthase (HpKDO8PS).
Eur.J.Med.Chem., 108, 2016
4Z1C
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BU of 4z1c by Molmil
Structure of Cadmium bound KDO8PS from H.pylori
Descriptor: 2-dehydro-3-deoxyphosphooctonate aldolase, CADMIUM ION
Authors:Lee, B.J, Cho, S, Im, H, Yoon, H.J.
Deposit date:2015-03-27
Release date:2016-03-09
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Identification of novel scaffolds for potential anti-Helicobacter pylori agents based on the crystal structure of H. pylori 3-deoxy-d-manno-octulosonate 8-phosphate synthase (HpKDO8PS).
Eur.J.Med.Chem., 108, 2016
4N9H
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BU of 4n9h by Molmil
Crystal structure of Transcription regulation Protein CRP
Descriptor: Catabolite gene activator
Authors:Lee, B.J, Seok, S.H, Im, H, Yoon, H.J.
Deposit date:2013-10-21
Release date:2014-07-09
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structures of inactive CRP species reveal the atomic details of the allosteric transition that discriminates cyclic nucleotide second messengers.
Acta Crystallogr.,Sect.D, 70, 2014
4LTT
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BU of 4ltt by Molmil
Crystal structure of native apo toxin from Helicobacter pylori
Descriptor: Uncharacterized protein, toxin
Authors:Lee, B.J, Im, H, Pathak, C.C, Yoon, H.J.
Deposit date:2013-07-23
Release date:2014-02-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:Crystal structure of apo and copper bound HP0894 toxin from Helicobacter pylori 26695 and insight into mRNase activity
Biochim.Biophys.Acta, 1834, 2013
4LSY
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BU of 4lsy by Molmil
Crystal structure of copper-bound L66S mutant toxin from Helicobacter pylori
Descriptor: CITRATE ANION, COPPER (II) ION, Uncharacterized protein, ...
Authors:Lee, B.J, Im, H, Pathak, C.C, Yoon, H.J.
Deposit date:2013-07-23
Release date:2014-02-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.895 Å)
Cite:Crystal structure of apo and copper bound HP0894 toxin from Helicobacter pylori 26695 and insight into mRNase activity
Biochim.Biophys.Acta, 1834, 2013
4NRN
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BU of 4nrn by Molmil
Crystal structure of metal-bound toxin from Helicobacter pylori
Descriptor: ZINC ION, metal-bound toxin
Authors:Lee, B.J, Im, H, Pathak, C, Jang, S.B.
Deposit date:2013-11-27
Release date:2014-10-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.802 Å)
Cite:Crystal structure of toxin HP0892 from Helicobacter pylori with two Zn(II) at 1.8 angstrom resolution
Protein Sci., 23, 2014
6IFM
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BU of 6ifm by Molmil
Crystal structure of DNA bound VapBC from Salmonella typhimurium
Descriptor: Antitoxin VapB, DNA backward (27-MER), DNA forward (27-MER), ...
Authors:Park, D.W, Lee, B.J.
Deposit date:2018-09-20
Release date:2020-01-29
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.804 Å)
Cite:Crystal structure of proteolyzed VapBC and DNA-bound VapBC from Salmonella enterica Typhimurium LT2 and VapC as a putative Ca2+-dependent ribonuclease.
Faseb J., 34, 2020
6IFC
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BU of 6ifc by Molmil
Crystal structure of VapBC from Salmonella typhimurium
Descriptor: Antitoxin VapB, CALCIUM ION, tRNA(fMet)-specific endonuclease VapC
Authors:Park, D.W, Lee, B.J.
Deposit date:2018-09-19
Release date:2020-01-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Crystal structure of proteolyzed VapBC and DNA-bound VapBC from Salmonella enterica Typhimurium LT2 and VapC as a putative Ca2+-dependent ribonuclease.
Faseb J., 34, 2020
6JHW
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BU of 6jhw by Molmil
Structure of anti-CRISPR AcrIIC3 and NmeCas9 HNH
Descriptor: AcrIIC3, CRISPR-associated endonuclease Cas9
Authors:Suh, J.Y, Lee, B.J, Lee, S.J, Kim, Y.
Deposit date:2019-02-19
Release date:2019-08-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Anti-CRISPR AcrIIC3 discriminates between Cas9 orthologs via targeting the variable surface of the HNH nuclease domain.
Febs J., 286, 2019
6JHV
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BU of 6jhv by Molmil
Structure of anti-CRISPR AcrIIC3
Descriptor: AcrIIC3
Authors:Suh, J.Y, Lee, B.J, Lee, S.J, Kim, Y.
Deposit date:2019-02-19
Release date:2019-08-28
Last modified:2019-12-18
Method:X-RAY DIFFRACTION (2.321 Å)
Cite:Anti-CRISPR AcrIIC3 discriminates between Cas9 orthologs via targeting the variable surface of the HNH nuclease domain.
Febs J., 286, 2019
4Z9E
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BU of 4z9e by Molmil
Alba from Thermoplasma volcanium
Descriptor: DNA/RNA-binding protein Alba
Authors:Ma, C, Lee, S.J, Pathak, C, Lee, B.J.
Deposit date:2015-04-10
Release date:2016-02-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Alba from Thermoplasma volcanium belongs to alpha-NAT's: An insight into the structural aspects of Tv Alba and its acetylation by Tv Ard1.
Arch.Biochem.Biophys., 590, 2016
5HS9
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BU of 5hs9 by Molmil
Crystal structure of the quinone-bound YodB from B. subtilis
Descriptor: HTH-type transcriptional regulator YodB
Authors:Lee, S.J, Lee, I.G, Lee, B.J.
Deposit date:2016-01-25
Release date:2016-08-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Two distinct mechanisms of transcriptional regulation by the redox sensor YodB
Proc.Natl.Acad.Sci.USA, 113, 2016
5HS7
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BU of 5hs7 by Molmil
Reduced form of the transcriptional regulator YodB from B. subtilis
Descriptor: GLYCEROL, HTH-type transcriptional regulator YodB
Authors:Lee, S.J, Lee, I.G, Lee, B.J.
Deposit date:2016-01-25
Release date:2016-08-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Two distinct mechanisms of transcriptional regulation by the redox sensor YodB
Proc.Natl.Acad.Sci.USA, 113, 2016
5HS8
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BU of 5hs8 by Molmil
Crystal structure of the diamide-treated YodB from B. subtilis
Descriptor: HTH-type transcriptional regulator YodB
Authors:Lee, S.J, Lee, I.G, Lee, B.J.
Deposit date:2016-01-25
Release date:2016-08-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Two distinct mechanisms of transcriptional regulation by the redox sensor YodB
Proc.Natl.Acad.Sci.USA, 113, 2016
8H0H
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BU of 8h0h by Molmil
Hypotethical protein from Mycobacterium tuberculsosis
Descriptor: Uncharacterized protein Rv1546
Authors:Kim, D.H, Na, Y, Lee, B.J.
Deposit date:2022-09-29
Release date:2023-09-06
Method:X-RAY DIFFRACTION (2.74 Å)
Cite:Domain swapping of the C-terminal helix promotes the dimerization of a novel ribonuclease protein from Mycobacterium tuberculosis.
Protein Sci., 32, 2023
8H2D
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BU of 8h2d by Molmil
The hypothetical protein from Mycobacterium tuberculosis mutant - E47A
Descriptor: Uncharacterized protein Rv1546
Authors:Kim, D.H, Na, Y, Lee, B.J.
Deposit date:2022-10-05
Release date:2023-09-06
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Domain swapping of the C-terminal helix promotes the dimerization of a novel ribonuclease protein from Mycobacterium tuberculosis.
Protein Sci., 32, 2023
3U7K
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BU of 3u7k by Molmil
Crystal structures of the Staphylococcus aureus peptide deformylase in complex with two classes of new inhibitors
Descriptor: (S)-N-(cyclopentylmethyl)-N-(2-(hydroxyamino)-2-oxoethyl)-2-(3-(2-methoxyphenyl)ureido)-3,3-dimethylbutanamide, Peptide deformylase, ZINC ION
Authors:Lee, S.J, Lee, S.-J, Lee, S.K, Yoon, H.-J, Lee, H.H, Kim, K.K, Lee, B.J, Suh, S.W.
Deposit date:2011-10-14
Release date:2012-06-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structures of Staphylococcus aureus peptide deformylase in complex with two classes of new inhibitors
Acta Crystallogr.,Sect.D, 68, 2012
3U7N
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BU of 3u7n by Molmil
Crystal structures of the Staphylococcus aureus peptide deformylase in complex with two classes of new inhibitors
Descriptor: N-((2R,4S)-2-butyl-5-methyl-4-(3-(5-methylpyridin-2-yl)ureido)-3-oxohexyl)-N-hydroxyformamide, Peptide deformylase, ZINC ION
Authors:Lee, S.J, Lee, S.-J, Lee, S.K, Yoon, H.-J, Lee, H.H, Kim, K.K, Lee, B.J, Suh, S.W.
Deposit date:2011-10-14
Release date:2012-06-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structures of Staphylococcus aureus peptide deformylase in complex with two classes of new inhibitors
Acta Crystallogr.,Sect.D, 68, 2012
3U7L
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BU of 3u7l by Molmil
Crystal structures of the Staphylococcus aureus peptide deformylase in complex with two classes of new inhibitors
Descriptor: (S)-N-(cyclopentylmethyl)-2-(3-(3,5-difluorophenyl)ureido)-N-(2-(hydroxyamino)-2-oxoethyl)-3,3-dimethylbutanamide, Peptide deformylase, ZINC ION
Authors:Lee, S.J, Lee, S.-J, Lee, S.K, Yoon, H.-J, Lee, H.H, Kim, K.K, Lee, B.J, Suh, S.W.
Deposit date:2011-10-14
Release date:2012-06-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Structures of Staphylococcus aureus peptide deformylase in complex with two classes of new inhibitors
Acta Crystallogr.,Sect.D, 68, 2012
3U7M
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BU of 3u7m by Molmil
Crystal structures of the Staphylococcus aureus peptide deformylase in complex with two classes of new inhibitors
Descriptor: N-((2R,4S)-2-butyl-4-(3-(2-fluorophenyl)ureido)-5-methyl-3-oxohexyl)-N-hydroxyformamide, Peptide deformylase, ZINC ION
Authors:Lee, S.J, Lee, S.-J, Lee, S.K, Yoon, H.-J, Lee, H.H, Kim, K.K, Lee, B.J, Suh, S.W.
Deposit date:2011-10-14
Release date:2012-06-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structures of Staphylococcus aureus peptide deformylase in complex with two classes of new inhibitors
Acta Crystallogr.,Sect.D, 68, 2012
3UI3
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BU of 3ui3 by Molmil
Structural and Biochemical Characterization of HP0315 from Helicobacter pylori as a VapD Protein with an Endoribonuclease Activity
Descriptor: Immunoglobulin G-binding protein G, Virulence-associated protein D
Authors:Kwon, A.R, Kim, J.H, Lee, B.J.
Deposit date:2011-11-04
Release date:2012-02-08
Last modified:2017-08-23
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural and biochemical characterization of HP0315 from Helicobacter pylori as a VapD protein with an endoribonuclease activity.
Nucleic Acids Res., 2012

 

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