Author results

1YG0
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SOLUTION STRUCTURE OF APO-COPP FROM HELICOBACTER PYLORI
Descriptor:COP associated protein
Authors:Lee, B.J., Park, S.J.
Deposit date:2005-01-04
Release date:2006-01-24
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of apo-CopP from Helicobacter pylori
To be published
4Z1A
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STRUCTURE OF APO FORM KDO8PS FROM H.PYLORI
Descriptor:2-dehydro-3-deoxyphosphooctonate aldolase
Authors:Lee, B.J., Cho, S., Im, H., Yoon, H.J.
Deposit date:2015-03-27
Release date:2016-03-09
Method:X-RAY DIFFRACTION (2 Å)
Cite:Identification of novel scaffolds for potential anti-Helicobacter pylori agents based on the crystal structure of H. pylori 3-deoxy-d-manno-octulosonate 8-phosphate synthase (HpKDO8PS).
Eur.J.Med.Chem., 108, 2016
4Z1B
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STRUCTURE OF H204A MUTANT KDO8PS FROM H.PYLORI
Descriptor:2-dehydro-3-deoxyphosphooctonate aldolase
Authors:Lee, B.J., Cho, S., Im, H., Yoon, H.J.
Deposit date:2015-03-27
Release date:2016-03-09
Last modified:2016-03-16
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Identification of novel scaffolds for potential anti-Helicobacter pylori agents based on the crystal structure of H. pylori 3-deoxy-d-manno-octulosonate 8-phosphate synthase (HpKDO8PS).
Eur.J.Med.Chem., 108, 2016
4Z1C
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STRUCTURE OF CADMIUM BOUND KDO8PS FROM H.PYLORI
Descriptor:2-dehydro-3-deoxyphosphooctonate aldolase, CADMIUM ION
Authors:Lee, B.J., Cho, S., Im, H., Yoon, H.J.
Deposit date:2015-03-27
Release date:2016-03-09
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Identification of novel scaffolds for potential anti-Helicobacter pylori agents based on the crystal structure of H. pylori 3-deoxy-d-manno-octulosonate 8-phosphate synthase (HpKDO8PS).
Eur.J.Med.Chem., 108, 2016
4Z1D
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STRUCTURE OF PEP AND ZINC BOUND KDO8PS FROM H.PYLORI
Descriptor:2-dehydro-3-deoxyphosphooctonate aldolase, PHOSPHOENOLPYRUVATE, ZINC ION
Authors:Lee, B.J., Cho, S., Im, H., Yoon, H.J.
Deposit date:2015-03-27
Release date:2016-03-09
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Identification of novel scaffolds for potential anti-Helicobacter pylori agents based on the crystal structure of H. pylori 3-deoxy-d-manno-octulosonate 8-phosphate synthase (HpKDO8PS).
Eur.J.Med.Chem., 108, 2016
4N9H
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CRYSTAL STRUCTURE OF TRANSCRIPTION REGULATION PROTEIN CRP
Descriptor:Catabolite gene activator
Authors:Lee, B.J., Seok, S.H., Im, H., Yoon, H.J.
Deposit date:2013-10-21
Release date:2014-07-09
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structures of inactive CRP species reveal the atomic details of the allosteric transition that discriminates cyclic nucleotide second messengers.
Acta Crystallogr.,Sect.D, 70, 2014
4LSY
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CRYSTAL STRUCTURE OF COPPER-BOUND L66S MUTANT TOXIN FROM HELICOBACTER PYLORI
Descriptor:Uncharacterized protein, Toxin, CITRATE ANION, ...
Authors:Lee, B.J., Im, H., Pathak, C.C., Yoon, H.J.
Deposit date:2013-07-23
Release date:2014-02-05
Method:X-RAY DIFFRACTION (1.895 Å)
Cite:Crystal structure of apo and copper bound HP0894 toxin from Helicobacter pylori 26695 and insight into mRNase activity
Biochim.Biophys.Acta, 1834, 2013
4LTT
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CRYSTAL STRUCTURE OF NATIVE APO TOXIN FROM HELICOBACTER PYLORI
Descriptor:Uncharacterized protein, toxin
Authors:Lee, B.J., Im, H., Pathak, C.C., Yoon, H.J.
Deposit date:2013-07-23
Release date:2014-02-05
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:Crystal structure of apo and copper bound HP0894 toxin from Helicobacter pylori 26695 and insight into mRNase activity
Biochim.Biophys.Acta, 1834, 2013
4NRN
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CRYSTAL STRUCTURE OF METAL-BOUND TOXIN FROM HELICOBACTER PYLORI
Descriptor:metal-bound toxin, ZINC ION
Authors:Lee, B.J., Im, H., Pathak, C., Jang, S.B.
Deposit date:2013-11-27
Release date:2014-10-15
Method:X-RAY DIFFRACTION (1.802 Å)
Cite:Crystal structure of toxin HP0892 from Helicobacter pylori with two Zn(II) at 1.8 angstrom resolution
Protein Sci., 23, 2014
3U7K
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CRYSTAL STRUCTURES OF THE STAPHYLOCOCCUS AUREUS PEPTIDE DEFORMYLASE IN COMPLEX WITH TWO CLASSES OF NEW INHIBITORS
Descriptor:Peptide deformylase, (S)-N-(cyclopentylmethyl)-N-(2-(hydroxyamino)-2-oxoethyl)-2-(3-(2-methoxyphenyl)ureido)-3,3-dimethylbutanamide, ZINC ION
Authors:Lee, S.J., Lee, S.-J., Lee, S.K., Yoon, H.-J., Lee, H.H., Kim, K.K., Lee, B.J., Suh, S.W.
Deposit date:2011-10-14
Release date:2012-06-27
Last modified:2017-03-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structures of Staphylococcus aureus peptide deformylase in complex with two classes of new inhibitors
Acta Crystallogr.,Sect.D, 68, 2012
3U7L
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CRYSTAL STRUCTURES OF THE STAPHYLOCOCCUS AUREUS PEPTIDE DEFORMYLASE IN COMPLEX WITH TWO CLASSES OF NEW INHIBITORS
Descriptor:Peptide deformylase, ZINC ION, (S)-N-(cyclopentylmethyl)-2-(3-(3,5-difluorophenyl)ureido)-N-(2-(hydroxyamino)-2-oxoethyl)-3,3-dimethylbutanamide
Authors:Lee, S.J., Lee, S.-J., Lee, S.K., Yoon, H.-J., Lee, H.H., Kim, K.K., Lee, B.J., Suh, S.W.
Deposit date:2011-10-14
Release date:2012-06-27
Last modified:2017-03-01
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Structures of Staphylococcus aureus peptide deformylase in complex with two classes of new inhibitors
Acta Crystallogr.,Sect.D, 68, 2012
3U7M
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CRYSTAL STRUCTURES OF THE STAPHYLOCOCCUS AUREUS PEPTIDE DEFORMYLASE IN COMPLEX WITH TWO CLASSES OF NEW INHIBITORS
Descriptor:Peptide deformylase, ZINC ION, N-((2R,4S)-2-butyl-4-(3-(2-fluorophenyl)ureido)-5-methyl-3-oxohexyl)-N-hydroxyformamide
Authors:Lee, S.J., Lee, S.-J., Lee, S.K., Yoon, H.-J., Lee, H.H., Kim, K.K., Lee, B.J., Suh, S.W.
Deposit date:2011-10-14
Release date:2012-06-27
Last modified:2017-03-01
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structures of Staphylococcus aureus peptide deformylase in complex with two classes of new inhibitors
Acta Crystallogr.,Sect.D, 68, 2012
3U7N
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CRYSTAL STRUCTURES OF THE STAPHYLOCOCCUS AUREUS PEPTIDE DEFORMYLASE IN COMPLEX WITH TWO CLASSES OF NEW INHIBITORS
Descriptor:Peptide deformylase, ZINC ION, N-((2R,4S)-2-butyl-5-methyl-4-(3-(5-methylpyridin-2-yl)ureido)-3-oxohexyl)-N-hydroxyformamide
Authors:Lee, S.J., Lee, S.-J., Lee, S.K., Yoon, H.-J., Lee, H.H., Kim, K.K., Lee, B.J., Suh, S.W.
Deposit date:2011-10-14
Release date:2012-06-27
Last modified:2017-03-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structures of Staphylococcus aureus peptide deformylase in complex with two classes of new inhibitors
Acta Crystallogr.,Sect.D, 68, 2012
5HS7
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REDUCED FORM OF THE TRANSCRIPTIONAL REGULATOR YODB FROM B. SUBTILIS
Descriptor:HTH-type transcriptional regulator YodB, GLYCEROL
Authors:Lee, S.J., Lee, I.G., Lee, B.J.
Deposit date:2016-01-25
Release date:2016-08-17
Last modified:2016-09-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Two distinct mechanisms of transcriptional regulation by the redox sensor YodB
Proc.Natl.Acad.Sci.USA, 113, 2016
5HS8
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CRYSTAL STRUCTURE OF THE DIAMIDE-TREATED YODB FROM B. SUBTILIS
Descriptor:HTH-type transcriptional regulator YodB
Authors:Lee, S.J., Lee, I.G., Lee, B.J.
Deposit date:2016-01-25
Release date:2016-08-17
Last modified:2016-09-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Two distinct mechanisms of transcriptional regulation by the redox sensor YodB
Proc.Natl.Acad.Sci.USA, 113, 2016
5HS9
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CRYSTAL STRUCTURE OF THE QUINONE-BOUND YODB FROM B. SUBTILIS
Descriptor:HTH-type transcriptional regulator YodB
Authors:Lee, S.J., Lee, I.G., Lee, B.J.
Deposit date:2016-01-25
Release date:2016-08-17
Last modified:2016-09-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Two distinct mechanisms of transcriptional regulation by the redox sensor YodB
Proc.Natl.Acad.Sci.USA, 113, 2016
3UI3
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STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF HP0315 FROM HELICOBACTER PYLORI AS A VAPD PROTEIN WITH AN ENDORIBONUCLEASE ACTIVITY
Descriptor:Immunoglobulin G-binding protein G, Virulence-associated protein D
Authors:Kwon, A.R., Kim, J.H., Lee, B.J.
Deposit date:2011-11-04
Release date:2012-02-08
Last modified:2017-08-23
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural and biochemical characterization of HP0315 from Helicobacter pylori as a VapD protein with an endoribonuclease activity.
Nucleic Acids Res., 2012
4Z9E
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ALBA FROM THERMOPLASMA VOLCANIUM
Descriptor:DNA/RNA-binding protein Alba
Authors:Ma, C., Lee, S.J., Pathak, C., Lee, B.J.
Deposit date:2015-04-10
Release date:2016-02-24
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Alba from Thermoplasma volcanium belongs to alpha-NAT's: An insight into the structural aspects of Tv Alba and its acetylation by Tv Ard1.
Arch.Biochem.Biophys., 590, 2016
4PV6
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CRYSTAL STRUCTURE ANALYSIS OF ARD1 FROM THERMOPLASMA VOLCANIUM
Descriptor:N-terminal acetyltransferase complex subunit [ARD1], ACETYL COENZYME *A, COENZYME A
Authors:Ma, C., Lee, S.J., Lee, B.J.
Deposit date:2014-03-15
Release date:2015-01-21
Method:X-RAY DIFFRACTION (3.32 Å)
Cite:Structure of Thermoplasma volcanium Ard1 belongs to N-acetyltransferase family member suggesting multiple ligand binding modes with acetyl coenzyme A and coenzyme A.
Biochim.Biophys.Acta, 1844, 2014
5X3T
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VAPBC FROM MYCOBACTERIUM TUBERCULOSIS
Descriptor:Antitoxin VapB26, Ribonuclease VapC26, MAGNESIUM ION
Authors:Kang, S.M., Kim, D.H., Yoon, H.J., Lee, B.J.
Deposit date:2017-02-07
Release date:2017-06-07
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Functional details of the Mycobacterium tuberculosis VapBC26 toxin-antitoxin system based on a structural study: insights into unique binding and antibiotic peptides.
Nucleic Acids Res., 45, 2017
5XR2
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SAV0551
Descriptor:Protein/nucleic acid deglycase HchA, LACTIC ACID, ZINC ION
Authors:Kim, H.J., Kwon, A.R., Lee, B.J.
Deposit date:2017-06-07
Release date:2017-11-01
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural and functional studies of SAV0551 fromStaphylococcus aureusas a chaperone and glyoxalase III.
Biosci. Rep., 37, 2017
5XR3
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SAV0551 WITH GLYOXYLATE
Descriptor:Protein/nucleic acid deglycase HchA, GLYOXYLIC ACID
Authors:Kim, H.J., Kwon, A.R., Lee, B.J.
Deposit date:2017-06-08
Release date:2017-11-01
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (3.01 Å)
Cite:Structural and functional studies of SAV0551 fromStaphylococcus aureusas a chaperone and glyoxalase III.
Biosci. Rep., 37, 2017
1Z8M
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SOLUTION STRUCTURE OF THE CONSERVED HYPOTHTICAL PROTEIN HP0894 FROM HELICOBACTER PYLORI
Descriptor:conserved hypothetical protein HP0894
Authors:Han, K.D., Park, S.J., Jang, S.B., Lee, B.J.
Deposit date:2005-03-30
Release date:2005-11-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of conserved hypothetical protein HP0894 from Helicobacter pylori
Proteins, 61, 2005
1ZHC
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SOLUTION STRUCTURE OF HP1242 FROM HELICOBACTER PYLORI
Descriptor:hypothetical protein HP1242
Authors:Kang, S.J., Park, S.J., Jung, S.J., Lee, B.J.
Deposit date:2005-04-25
Release date:2005-12-06
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of HP1242 from Helicobacter pylori
Proteins, 61, 2005
2H9Z
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SOLUTION STRUCTURE OF HYPOTHETICAL PROTEIN, HP0495 FROM HELICOBACTER PYLORI
Descriptor:Hypothetical protein HP0495
Authors:Seo, M.D., Park, S.J., Kim, H.J., Lee, B.J.
Deposit date:2006-06-12
Release date:2007-05-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of hypothetical protein, HP0495 (Y495_HELPY) from Helicobacter pylori.
Proteins, 67, 2007
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