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1ZB6
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BU of 1zb6 by Molmil
Co-Crystal Structure of ORF2 an Aromatic Prenyl Transferase from Streptomyces sp. strain cl190 complexed with GSPP and 1,6-dihydroxynaphtalene
Descriptor: 1,6-DIHYDROXY NAPHTHALENE, Aromatic prenyltransferase, GERANYL S-THIOLODIPHOSPHATE, ...
Authors:Kuzuyama, T, Noel, J.P, Richard, S.B.
Deposit date:2005-04-07
Release date:2005-06-21
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural basis for the promiscuous biosynthetic prenylation of aromatic natural products.
Nature, 435, 2005
1ZDW
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BU of 1zdw by Molmil
Co-crystal structure of Orf2 an aromatic prenyl transferase from Streptomyces sp. strain CL190 complexed with GSPP and Flaviolin
Descriptor: Aromatic prenyltransferase, FLAVIOLIN, GERANYL S-THIOLODIPHOSPHATE, ...
Authors:Kuzuyama, T, Noel, J.P, Richard, S.B.
Deposit date:2005-04-15
Release date:2005-06-21
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Structural basis for the promiscuous biosynthetic prenylation of aromatic natural products.
Nature, 435, 2005
1ZDY
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BU of 1zdy by Molmil
Co-crystal structure of Orf2 an aromatic prenyl transferase from Streptomyces sp. strain CL190 complexed with TAPS
Descriptor: Aromatic prenyltransferase, N-(TRIS(HYDROXYMETHYL)METHYL)-3-AMINOPROPANESULFONIC ACID
Authors:Kuzuyama, T, Noel, J.P, Richard, S.B.
Deposit date:2005-04-15
Release date:2005-06-21
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:Structural basis for the promiscuous biosynthetic prenylation of aromatic natural products.
Nature, 435, 2005
1ZCW
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BU of 1zcw by Molmil
Co-crystal structure of Orf2 an aromatic prenyl transferase from Streptomyces sp. strain CL190 complexed with GPP
Descriptor: Aromatic prenyltransferase, GERANYL DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Kuzuyama, T, Noel, J.P, Richard, S.B.
Deposit date:2005-04-13
Release date:2005-06-21
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural basis for the promiscuous biosynthetic prenylation of aromatic natural products.
Nature, 435, 2005
8HAR
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BU of 8har by Molmil
SAH-bound C-Methyltransferase Fur6 from Streptomyces sp. KO-3988
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Fur6, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Noguchi, T, Nagata, R, Tomita, T, Kuzuyama, T.
Deposit date:2022-10-26
Release date:2023-11-01
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Reductive biosynthesis of meroterpenoids via transient diazotization
To Be Published
4Y1P
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BU of 4y1p by Molmil
Crystal structure of 3-isopropylmalate dehydrogenase (Saci_0600) from Sulfolobus acidocaldarius complex with 3-isopropylmalate and Mg2+
Descriptor: 3-ISOPROPYLMALIC ACID, 3-isopropylmalate dehydrogenase, MAGNESIUM ION, ...
Authors:Takahashi, K, Tomita, T, Kuzuyama, T, Nishiyama, M.
Deposit date:2015-02-08
Release date:2016-03-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Characterization of two beta-decarboxylating dehydrogenases from Sulfolobus acidocaldarius
Extremophiles, 20, 2016
4YB4
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BU of 4yb4 by Molmil
Crystal structure of homoisocitrate dehydrogenase from Thermus thermophilus in complex with homoisocitrate, magnesium ion (II) and NADH
Descriptor: (1R,2S)-1-hydroxybutane-1,2,4-tricarboxylic acid, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Takahashi, K, Tomita, T, Kuzuyama, T, Nishiyama, M.
Deposit date:2015-02-18
Release date:2016-03-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of homoisocitrate dehydrogenase from Thermus thermophilus in complex with homoisocitrate, magnesium(II) and NADH
To Be Published
6IR4
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BU of 6ir4 by Molmil
Crystal structure of BioU from Synechocystis sp.PCC6803 (apo form)
Descriptor: Slr0355 protein
Authors:Sakaki, K, Oishi, K, Shimizu, T, Tomita, T, Kuzuyama, T, Nishiyama, M.
Deposit date:2018-11-10
Release date:2020-01-15
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:A suicide enzyme catalyzes multiple reactions for biotin biosynthesis in cyanobacteria.
Nat.Chem.Biol., 16, 2020
6ITD
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BU of 6itd by Molmil
Crystal structure of BioU (K124A) from Synechocystis sp.PCC6803 in complex with the analog of reaction intermediate, 3-(1-aminoethyl)-nonanedioic acid
Descriptor: 3-(1-AMINOETHYL)NONANEDIOIC ACID, Slr0355 protein
Authors:Sakaki, K, Tomita, T, Kuzuyama, T, Nishiyama, M.
Deposit date:2018-11-21
Release date:2020-01-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:A suicide enzyme catalyzes multiple reactions for biotin biosynthesis in cyanobacteria.
Nat.Chem.Biol., 16, 2020
6KTQ
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BU of 6ktq by Molmil
Crystal structure of catalytic domain of homocitrate synthase from Sulfolobus acidocaldarius (SaHCS(dRAM)) in complex with alpha-ketoglutarate/Zn2+/CoA
Descriptor: 2-OXOGLUTARIC ACID, COENZYME A, Homocitrate synthase, ...
Authors:Suzuki, T, Tomita, T, Kuzuyama, T, Nishiyama, M.
Deposit date:2019-08-28
Release date:2020-09-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Involvement of subdomain II in the recognition of acetyl-CoA revealed by the crystal structure of homocitrate synthase from Sulfolobus acidocaldarius.
Febs J., 288, 2021
6IPW
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BU of 6ipw by Molmil
Crystal structure of CqsB2 from Streptomyces exfoliatus in complex with the product, 1-(2-hydroxypropyl)-2-methyl-carbazole-3,4-dione
Descriptor: 2-methyl-1-[(2R)-2-oxidanylpropyl]-9H-carbazole-3,4-dione, CqsB2
Authors:Tomita, T, Kobayashi, M, Nishiyama, M, Kuzuyama, T.
Deposit date:2018-11-05
Release date:2019-10-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:An Unprecedented Cyclization Mechanism in the Biosynthesis of Carbazole Alkaloids in Streptomyces.
Angew.Chem.Int.Ed.Engl., 58, 2019
6IPV
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BU of 6ipv by Molmil
Crystal structure of CqsB2 from Streptomyces exfoliatus 2419-SVT2 (apo form)
Descriptor: CqsB2
Authors:Tomita, T, Kobayashi, M, Nishiyama, M, Kuzuyama, T.
Deposit date:2018-11-05
Release date:2019-10-16
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:An Unprecedented Cyclization Mechanism in the Biosynthesis of Carbazole Alkaloids in Streptomyces.
Angew.Chem.Int.Ed.Engl., 58, 2019
5X3D
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BU of 5x3d by Molmil
Crystal structure of HEP-CMP-bound form of cytidylyltransferase (CyTase) domain of Fom1 from Streptomyces wedmorensis
Descriptor: Phosphoenolpyruvate phosphomutase, [[(2R,3S,4R,5R)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-(2-hydroxyethyl)phosphinic acid
Authors:Tomita, T, Cho, S.H, Kuzuyama, T, Nishiyama, M.
Deposit date:2017-02-04
Release date:2017-09-13
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Fosfomycin Biosynthesis via Transient Cytidylylation of 2-Hydroxyethylphosphonate by the Bifunctional Fom1 Enzyme
ACS Chem. Biol., 12, 2017
1IV4
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BU of 1iv4 by Molmil
Structure of 2C-Methyl-D-erythritol-2,4-cyclodiphosphate Synthase (bound form Substrate)
Descriptor: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, CYTIDINE-5'-MONOPHOSPHATE, MAGNESIUM ION
Authors:Kishida, H, Wada, T, Unzai, S, Kuzuyama, T, Terada, T, Sirouzu, M, Yokoyama, S, Tame, J.R.H, Park, S.-Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-03-11
Release date:2002-09-11
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structure and catalytic mechanism of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MECDP) synthase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis.
Acta Crystallogr.,Sect.D, 59, 2003
1IV1
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BU of 1iv1 by Molmil
Structure of 2C-Methyl-D-erythritol-2,4-cyclodiphosphate Synthase
Descriptor: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Authors:Kishida, H, Wada, T, Unzai, S, Kuzuyama, T, Terada, T, Sirouzu, M, Yokoyama, S, Tame, J.R.H, Park, S.-Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-03-11
Release date:2002-09-11
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structure and catalytic mechanism of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MECDP) synthase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis.
Acta Crystallogr.,Sect.D, 59, 2003
1IV3
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BU of 1iv3 by Molmil
Structure of 2C-Methyl-D-erythritol-2,4-cyclodiphosphate Synthase (bound form MG atoms)
Descriptor: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, MAGNESIUM ION
Authors:Kishida, H, Wada, T, Unzai, S, Kuzuyama, T, Terada, T, Sirouzu, M, Yokoyama, S, Tame, J.R.H, Park, S.-Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-03-11
Release date:2002-09-11
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Structure and catalytic mechanism of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MECDP) synthase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis.
Acta Crystallogr.,Sect.D, 59, 2003
1IV2
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BU of 1iv2 by Molmil
Structure of 2C-Methyl-D-erythritol-2,4-cyclodiphosphate Synthase (bound form CDP)
Descriptor: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, CYTIDINE-5'-DIPHOSPHATE, MAGNESIUM ION
Authors:Kishida, H, Wada, T, Unzai, S, Kuzuyama, T, Terada, T, Sirouzu, M, Yokoyama, S, Tame, J.R.H, Park, S.-Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-03-11
Release date:2002-09-11
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structure and catalytic mechanism of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MECDP) synthase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis.
Acta Crystallogr.,Sect.D, 59, 2003
5XOY
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BU of 5xoy by Molmil
Crystal structure of LysK from Thermus thermophilus in complex with Lysine
Descriptor: LYSINE, SULFATE ION, [LysW]-lysine hydrolase
Authors:Tomita, T, Fujita, S, Hasebe, F, Cho, S.-H, Yoshida, A, Kuzuyama, T, Nishiyama, M.
Deposit date:2017-05-31
Release date:2017-09-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Crystal structure of LysK, an enzyme catalyzing the last step of lysine biosynthesis in Thermus thermophilus, in complex with lysine: Insight into the mechanism for recognition of the amino-group carrier protein, LysW
Biochem. Biophys. Res. Commun., 491, 2017
7VWT
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BU of 7vwt by Molmil
Carbazole Prenyl Transferase CqsB4
Descriptor: 2-methyl-1-[(2R)-2-oxidanylpropyl]-9H-carbazole-3,4-dione, CqsB4, DI(HYDROXYETHYL)ETHER, ...
Authors:Suemune, H, Nagata, R, Kuzuyama, T, Nagano, S.
Deposit date:2021-11-11
Release date:2022-03-23
Last modified:2022-05-18
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Structural Basis for the Prenylation Reaction of Carbazole-Containing Natural Products Catalyzed by Squalene Synthase-Like Enzymes.
Angew.Chem.Int.Ed.Engl., 61, 2022
7VWS
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BU of 7vws by Molmil
Carbazole Prenyl Transferase LvqB4
Descriptor: 2-methyl-1-[(2R)-2-oxidanylpropyl]-9H-carbazole-3,4-dione, LvqB4, MAGNESIUM ION, ...
Authors:Suemune, H, Nagata, R, Kuzuyama, T, Nagano, S.
Deposit date:2021-11-11
Release date:2022-03-23
Last modified:2022-05-18
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Structural Basis for the Prenylation Reaction of Carbazole-Containing Natural Products Catalyzed by Squalene Synthase-Like Enzymes.
Angew.Chem.Int.Ed.Engl., 61, 2022
1JVS
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BU of 1jvs by Molmil
Crystal structure of 1-deoxy-D-xylulose 5-phosphate reductoisomerase; a target enzyme for antimalarial drugs
Descriptor: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, SULFATE ION
Authors:Yajima, S, Nonaka, T, Kuzuyama, T, Seto, H, Ohsawa, K.
Deposit date:2001-08-31
Release date:2002-10-09
Last modified:2019-11-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of 1-deoxy-D-xylulose 5-phosphate reductoisomerase complexed with cofactors: implications of a flexible loop movement upon substrate binding.
J.Biochem., 131, 2002
1WZE
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BU of 1wze by Molmil
Structural basis for alteration of cofactor specificity of Malate dehydrogenase from Thermus flavus
Descriptor: Malate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Tomita, T, Fushinobu, S, Kuzuyama, T, Nishiyama, M.
Deposit date:2005-03-04
Release date:2006-03-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for alteration of cofactor specificity of malate dehydrogenase from Thermus flavus
to be published
1WZI
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BU of 1wzi by Molmil
Structural basis for alteration of cofactor specificity of Malate dehydrogenase from Thermus flavus
Descriptor: Malate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Tomita, T, Fushinobu, S, Kuzuyama, T, Nishiyama, M.
Deposit date:2005-03-05
Release date:2006-03-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for alteration of cofactor specificity of malate dehydrogenase from Thermus flavus
to be published
3AAW
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BU of 3aaw by Molmil
Crystal structure of aspartate kinase from Corynebacterium glutamicum in complex with lysine and threonine
Descriptor: Aspartokinase, Aspartokinase LysC beta subunit, LYSINE, ...
Authors:Yoshida, A, Tomita, T, Kuzuyama, T, Nishiyama, M.
Deposit date:2009-11-27
Release date:2010-06-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mechanism of concerted inhibition of {alpha}2{beta}2-type heterooligomeric aspartate kinase from Corynebacterium glutamicum
J.Biol.Chem., 285, 2010
3AB2
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BU of 3ab2 by Molmil
Crystal structure of aspartate kinase from Corynebacterium glutamicum in complex with threonine
Descriptor: Aspartokinase, THREONINE
Authors:Yoshida, A, Tomita, T, Kuzuyama, T, Nishiyama, M.
Deposit date:2009-11-30
Release date:2010-06-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Mechanism of concerted inhibition of {alpha}2{beta}2-type heterooligomeric aspartate kinase from Corynebacterium glutamicum
J.Biol.Chem., 285, 2010

 

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