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5Y0C
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CRYSTAL STRUCTURE OF THE HUMAN NUCLEOSOME AT 2.09 ANGSTROM RESOLUTION
Descriptor:DNA (146-MER), Histone H3.1, Histone H4, ...
Authors:Kurumizaka, H., Arimura, Y., Fujita, R., Noda, M.
Deposit date:2017-07-16
Release date:2018-07-18
Last modified:2018-11-21
Method:X-RAY DIFFRACTION (2.087 Å)
Cite:Cancer-associated mutations of histones H2B, H3.1 and H2A.Z.1 affect the structure and stability of the nucleosome.
Nucleic Acids Res., 46, 2018
5Y0D
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CRYSTAL STRUCTURE OF THE HUMAN NUCLEOSOME CONTAINING THE H2B E76K MUTANT
Descriptor:Histone H3.1, Histone H4, Histone H2A type 1-B/E, ...
Authors:Kurumizaka, H., Arimura, Y., Fujita, R., Noda, M.
Deposit date:2017-07-16
Release date:2018-07-18
Last modified:2018-11-21
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Cancer-associated mutations of histones H2B, H3.1 and H2A.Z.1 affect the structure and stability of the nucleosome.
Nucleic Acids Res., 46, 2018
1HNR
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H-NS (DNA-BINDING DOMAIN)
Descriptor:H-NS
Authors:Shindo, H., Iwaki, T., Ieda, R., Kurumizaka, H., Ueguchi, C., Mizuno, T., Morikawa, S., Nakamura, H., Kuboniwa, H.
Deposit date:1995-04-06
Release date:1995-07-10
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the DNA binding domain of a nucleoid-associated protein, H-NS, from Escherichia coli.
FEBS Lett., 360, 1995
1HNS
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H-NS (DNA-BINDING DOMAIN)
Descriptor:H-NS
Authors:Shindo, H., Iwaki, T., Ieda, R., Kurumizaka, H., Ueguchi, C., Mizuno, T., Morikawa, S., Nakamura, H., Kuboniwa, H.
Deposit date:1995-04-06
Release date:1995-07-10
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the DNA binding domain of a nucleoid-associated protein, H-NS, from Escherichia coli.
FEBS Lett., 360, 1995
5B1L
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THE MOUSE NUCLEOSOME STRUCTURE CONTAINING H3T
Descriptor:Histone H3t, Histone H4, Histone H2A type 1, ...
Authors:Urahama, T., Machida, S., Horikoshi, N., Osakabe, A., Tachiwana, H., Taguchi, H., Kurumizaka, H.
Deposit date:2015-12-08
Release date:2017-02-15
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Testis-Specific Histone Variant H3t Gene Is Essential for Entry into Spermatogenesis
Cell Rep, 18, 2017
5B1M
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THE MOUSE NUCLEOSOME STRUCTURE CONTAINING H3.1
Descriptor:Histone H3.1, Histone H4, Histone H2A type 1, ...
Authors:Urahama, T., Machida, S., Horikoshi, N., Osakabe, A., Tachiwana, H., Taguchi, H., Kurumizaka, H.
Deposit date:2015-12-08
Release date:2017-02-15
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:Testis-Specific Histone Variant H3t Gene Is Essential for Entry into Spermatogenesis
Cell Rep, 18, 2017
3A6N
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THE NUCLEOSOME CONTAINING A TESTIS-SPECIFIC HISTONE VARIANT, HUMAN H3T
Descriptor:Histone H3.1t, Histone H4, Histone H2A type 1-B/E, ...
Authors:Tachiwana, H., Kagawa, W., Osakabe, A., Koichiro, K., Shiga, T., Kimura, H., Kurumizaka, H.
Deposit date:2009-09-04
Release date:2010-05-26
Last modified:2012-07-18
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis of instability of the nucleosome containing a testis-specific histone variant, human H3T
Proc.Natl.Acad.Sci.USA, 107, 2010
3AFA
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THE HUMAN NUCLEOSOME STRUCTURE
Descriptor:Histone H3.1, Histone H4, Histone H2A type 1-B/E, ...
Authors:Tachiwana, H., Kagawa, W., Osakabe, A., Koichiro, K., Shiga, T., Kimura, H., Kurumizaka, H.
Deposit date:2010-02-24
Release date:2010-05-26
Last modified:2012-07-18
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis of instability of the nucleosome containing a testis-specific histone variant, human H3T
Proc.Natl.Acad.Sci.USA, 107, 2010
3AN2
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THE STRUCTURE OF THE CENTROMERIC NUCLEOSOME CONTAINING CENP-A
Descriptor:Histone H3-like centromeric protein A, Histone H4, Histone H2A type 1-B/E, ...
Authors:Tachiwana, H., Kagawa, W., Shiga, T., Saito, K., Osakabe, A., Hayashi-Takanaka, Y., Park, S.-Y., Kimura, H., Kurumizaka, H.
Deposit date:2010-08-27
Release date:2011-07-20
Last modified:2012-07-25
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Crystal structure of the human centromeric nucleosome containing CENP-A
Nature, 476, 2011
3AV1
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THE HUMAN NUCLEOSOME STRUCTURE CONTAINING THE HISTONE VARIANT H3.2
Descriptor:Histone H3.2, Histone H4, Histone H2A type 1-B/E, ...
Authors:Tachiwana, H., Osakabe, A., Shiga, T., Miya, Y., Kimura, H., Kagawa, W., Kurumizaka, H.
Deposit date:2011-02-18
Release date:2011-06-01
Last modified:2012-07-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structures of human nucleosomes containing major histone H3 variants
Acta Crystallogr.,Sect.D, 67, 2011
3AV2
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THE HUMAN NUCLEOSOME STRUCTURE CONTAINING THE HISTONE VARIANT H3.3
Descriptor:Histone H3.3, Histone H4, Histone H2A type 1-B/E, ...
Authors:Tachiwana, H., Osakabe, A., Shiga, T., Miya, M., Kimura, H., Kagawa, W., Kurumizaka, H.
Deposit date:2011-02-18
Release date:2011-06-01
Last modified:2012-07-18
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structures of human nucleosomes containing major histone H3 variants
Acta Crystallogr.,Sect.D, 67, 2011
3W96
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CRYSTAL STRUCTURE OF HUMAN NUCLEOSOME CORE PARTICLE LACKING H2A N-TERMINAL REGION
Descriptor:Histone H3.1, Histone H4, Histone H2A type 1-B/E, ...
Authors:Iwasaki, W., Miya, Y., Horikoshi, N., Osakabe, A., Tachiwana, H., Shibata, T., Kagawa, W., Kurumizaka, H.
Deposit date:2013-04-01
Release date:2013-08-28
Last modified:2013-12-18
Method:X-RAY DIFFRACTION (3 Å)
Cite:Contribution of histone N-terminal tails to the structure and stability of nucleosomes
FEBS Open Bio, 3, 2013
3W97
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CRYSTAL STRUCTURE OF HUMAN NUCLEOSOME CORE PARTICLE LACKING H2B N-TERMINAL REGION
Descriptor:Histone H3.1, Histone H4, Histone H2A type 1-B/E, ...
Authors:Iwasaki, W., Miya, Y., Horikoshi, N., Osakabe, A., Tachiwana, H., Shibata, T., Kagawa, W., Kurumizaka, H.
Deposit date:2013-04-01
Release date:2013-08-28
Last modified:2013-12-18
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Contribution of histone N-terminal tails to the structure and stability of nucleosomes
FEBS Open Bio, 3, 2013
3W98
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CRYSTAL STRUCTURE OF HUMAN NUCLEOSOME CORE PARTICLE LACKING H3.1 N-TERMINAL REGION
Descriptor:Histone H3.1, Histone H4, Histone H2A type 1-B/E, ...
Authors:Iwasaki, W., Miya, Y., Horikoshi, N., Osakabe, A., Tachiwana, H., Shibata, T., Kagawa, W., Kurumizaka, H.
Deposit date:2013-04-01
Release date:2013-08-28
Last modified:2013-12-18
Method:X-RAY DIFFRACTION (3.42 Å)
Cite:Contribution of histone N-terminal tails to the structure and stability of nucleosomes
FEBS Open Bio, 3, 2013
3W99
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CRYSTAL STRUCTURE OF HUMAN NUCLEOSOME CORE PARTICLE LACKING H4 N-TERMINAL REGION
Descriptor:Histone H3.1, Histone H4, Histone H2A type 1-B/E, ...
Authors:Iwasaki, W., Miya, Y., Horikoshi, N., Osakabe, A., Tachiwana, H., Shibata, T., Kagawa, W., Kurumizaka, H.
Deposit date:2013-04-01
Release date:2013-08-28
Last modified:2018-08-22
Method:X-RAY DIFFRACTION (3 Å)
Cite:Contribution of histone N-terminal tails to the structure and stability of nucleosomes
FEBS Open Bio, 3, 2013
3WA9
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THE NUCLEOSOME CONTAINING HUMAN H2A.Z.1
Descriptor:Histone H3.1, Histone H4, Histone H2A.Z, ...
Authors:Horikoshi, N., Sato, K., Shimada, K., Arimura, Y., Osakabe, A., Tachiwana, H., Iwasaki, W., Kagawa, W., Harata, M., Kimura, H., Kurumizaka, H.
Deposit date:2013-04-30
Release date:2013-12-18
Method:X-RAY DIFFRACTION (3.07 Å)
Cite:Structural polymorphism in the L1 loop regions of human H2A.Z.1 and H2A.Z.2
Acta Crystallogr.,Sect.D, 69, 2013
3WAA
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THE NUCLEOSOME CONTAINING HUMAN H2A.Z.2
Descriptor:Histone H3.1, Histone H4, Histone H2A.V, ...
Authors:Horikoshi, N., Sato, K., Shimada, K., Arimura, Y., Osakabe, A., Tachiwana, H., Iwasaki, W., Kagawa, W., Harata, M., Kimura, H., Kurumizaka, H.
Deposit date:2013-04-30
Release date:2013-12-18
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural polymorphism in the L1 loop regions of human H2A.Z.1 and H2A.Z.2
Acta Crystallogr.,Sect.D, 69, 2013
4Z5T
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THE NUCLEOSOME CONTAINING HUMAN H3.5
Descriptor:Histone H3.3C, Histone H4, Histone H2A type 1-B/E, ...
Authors:Urahama, T., Harada, A., Maehara, K., Horikoshi, N., Sato, K., Sato, Y., Shiraishi, K., Sugino, N., Osakabe, A., Tachiwana, H., Kagawa, W., Kimura, H., Ohkawa, Y., Kurumizaka, H.
Deposit date:2015-04-03
Release date:2016-02-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Histone H3.5 forms an unstable nucleosome and accumulates around transcription start sites in human testis.
Epigenetics Chromatin, 9, 2016
5GXQ
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THE CRYSTAL STRUCTURE OF THE NUCLEOSOME CONTAINING H3.6
Descriptor:Histone H3.6, Histone H4, Histone H2A type 1-B/E, ...
Authors:Taguchi, H., Xie, Y., Horikoshi, N., Kurumizaka, H.
Deposit date:2016-09-19
Release date:2017-04-19
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Crystal Structure and Characterization of Novel Human Histone H3 Variants, H3.6, H3.7, and H3.8
Biochemistry, 56, 2017
5X7X
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THE CRYSTAL STRUCTURE OF THE NUCLEOSOME CONTAINING H3.3 AT 2.18 ANGSTROM RESOLUTION
Descriptor:Histone H3.3, Histone H4, Histone H2A type 1-B/E, ...
Authors:Arimura, Y., Taguchi, H., Kurumizaka, H.
Deposit date:2017-02-27
Release date:2017-04-19
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.184 Å)
Cite:Crystal Structure and Characterization of Novel Human Histone H3 Variants, H3.6, H3.7, and H3.8
Biochemistry, 56, 2017
5XM0
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THE MOUSE NUCLEOSOME STRUCTURE CONTAINING H2A, H2B TYPE3-A, H3.3, AND H4
Descriptor:Histone H3.3, Histone H4, Histone H2A type 1-B, ...
Authors:Taguchi, H., Horikoshi, N., Kurumizaka, H.
Deposit date:2017-05-12
Release date:2018-03-07
Last modified:2019-03-20
Method:X-RAY DIFFRACTION (2.874 Å)
Cite:Histone H3.3 sub-variant H3mm7 is required for normal skeletal muscle regeneration.
Nat Commun, 9, 2018
5XM1
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THE MOUSE NUCLEOSOME STRUCTURE CONTAINING H2A, H2B TYPE3-A, H3MM7, AND H4
Descriptor:Histone H3mm7, Histone H4, Histone H2A type 1-B, ...
Authors:Taguchi, H., Horikoshi, N., Kurumizaka, H.
Deposit date:2017-05-12
Release date:2018-03-07
Last modified:2019-03-20
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:Histone H3.3 sub-variant H3mm7 is required for normal skeletal muscle regeneration.
Nat Commun, 9, 2018
5ZBX
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THE CRYSTAL STRUCTURE OF THE NUCLEOSOME CONTAINING HISTONE H3.1 CATD(V76Q, K77D)
Descriptor:Histone H3.1,Histone H3-like centromeric protein A,Histone H3.1, Histone H4, Histone H2A type 1-B/E, ...
Authors:Arimura, Y., Takagi, H., Kurumizaka, H.
Deposit date:2018-02-13
Release date:2019-02-13
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:The CENP-A centromere targeting domain facilitates H4K20 monomethylation in the nucleosome by structural polymorphism.
Nat Commun, 10, 2019
1AA3
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C-TERMINAL DOMAIN OF THE E. COLI RECA, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor:RECA
Authors:Aihara, H., Ito, Y., Kurumizaka, H., Terada, T., Yokoyama, S., Shibata, T., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:1997-01-22
Release date:1997-07-23
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:An interaction between a specified surface of the C-terminal domain of RecA protein and double-stranded DNA for homologous pairing.
J.Mol.Biol., 274, 1997
1B22
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RAD51 (N-TERMINAL DOMAIN)
Descriptor:DNA REPAIR PROTEIN RAD51
Authors:Aihara, H., Ito, Y., Kurumizaka, H., Yokoyama, S., Shibata, T., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:1998-12-04
Release date:1999-12-03
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The N-terminal domain of the human Rad51 protein binds DNA: structure and a DNA binding surface as revealed by NMR.
J.Mol.Biol., 290, 1999