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7C3H
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BU of 7c3h by Molmil
Structure of L-lysine oxidase in complex with L-lysine
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Kondo, H, Kitagawa, M, Sugiyama, S, Imada, K.
Deposit date:2020-05-12
Release date:2020-09-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis of strict substrate recognition of l-lysine alpha-oxidase from Trichoderma viride.
Protein Sci., 29, 2020
2YQU
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BU of 2yqu by Molmil
Crystal structures and evolutionary relationship of two different lipoamide dehydrogenase(E3s) from Thermus thermophilus
Descriptor: 2-oxoglutarate dehydrogenase E3 component, CARBONATE ION, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Kondo, H, Hossain, M.T, Adachi, W, Nakai, T, Kamiya, N, Kuramitsu, K.
Deposit date:2007-03-31
Release date:2008-04-01
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structures and evolutionary relationship of two different lipoamide dehydrogenase(E3s) from Thermus thermophilus
To be Published
3VN3
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BU of 3vn3 by Molmil
Fungal antifreeze protein exerts hyperactivity by constructing an inequable beta-helix
Descriptor: 1,2-ETHANEDIOL, Antifreeze protein
Authors:Kondo, H, Xiao, N, Hanada, Y, Sugimoto, H, Hoshino, T, Garnham, C.P, Davies, P.L, Tsuda, S.
Deposit date:2011-12-21
Release date:2012-06-06
Last modified:2013-07-17
Method:X-RAY DIFFRACTION (0.95 Å)
Cite:Ice-binding site of snow mold fungus antifreeze protein deviates from structural regularity and high conservation
Proc.Natl.Acad.Sci.USA, 109, 2012
1J05
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BU of 1j05 by Molmil
The crystal structure of anti-carcinoembryonic antigen monoclonal antibody T84.66 Fv fragment
Descriptor: GLYCEROL, PHOSPHATE ION, anti-CEA mAb T84.66, ...
Authors:Kondo, H, Nishimura, Y, Shiroishi, M, Asano, R, Noro, N, Tsumoto, K, Kumagai, I.
Deposit date:2002-11-01
Release date:2003-12-16
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The crystal structure of anti-carcinoembryonic antigen monoclonal antibody T84.66 Fv fragment
To be Published
6A8K
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BU of 6a8k by Molmil
Crystal structure of Ice-binding Protein from a Sea-Ice Microalga
Descriptor: GLYCEROL, Ice binding protein 1
Authors:Kondo, H, Bayer-Giraldi, M.
Deposit date:2018-07-09
Release date:2018-11-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Multiple binding modes of a moderate ice-binding protein from a polar microalga
Phys Chem Chem Phys, 20, 2018
2DHT
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BU of 2dht by Molmil
Crystal structure of isocitrate dehydrogenase from Sulfolobus tokodaii strain7
Descriptor: 409aa long hypothetical NADP-dependent isocitrate dehydrogenase
Authors:Kondo, H, Murakami, M, Ihara, K, Suzuki, S, Kouyama, T.
Deposit date:2006-03-25
Release date:2007-03-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of isocitrate dehydrogenase of Sulfolobus tokodaii strain7
To be Published
1C08
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BU of 1c08 by Molmil
CRYSTAL STRUCTURE OF HYHEL-10 FV-HEN LYSOZYME COMPLEX
Descriptor: ANTI-HEN EGG WHITE LYSOZYME ANTIBODY (HYHEL-10), LYSOZYME
Authors:Shiroishi, M, Kondo, H, Matsushima, M, Tsumoto, K, Kumagai, I.
Deposit date:1999-07-15
Release date:2000-07-19
Last modified:2023-05-31
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of anti-Hen egg white lysozyme antibody (HyHEL-10) Fv-antigen complex. Local structural changes in the protein antigen and water-mediated interactions of Fv-antigen and light chain-heavy chain interfaces.
J.Biol.Chem., 274, 1999
2DCZ
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BU of 2dcz by Molmil
Thermal Stabilization of Bacillus subtilis Family-11 Xylanase By Directed Evolution
Descriptor: 1,4-DIETHYLENE DIOXIDE, Endo-1,4-beta-xylanase A, SULFATE ION
Authors:Kondo, H, Miyazaki, K, Takenouchi, M, Noro, N, Suzuki, M, Tsuda, S.
Deposit date:2006-01-18
Release date:2006-02-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Thermal Stabilization of Bacillus subtilis Family-11 Xylanase by Directed Evolution
J.Biol.Chem., 281, 2006
2DCY
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BU of 2dcy by Molmil
Crystal structure of Bacillus subtilis family-11 xylanase
Descriptor: 1,4-DIETHYLENE DIOXIDE, D(-)-TARTARIC ACID, Endo-1,4-beta-xylanase A, ...
Authors:Kondo, H, Miyazaki, K, Takenouchi, M, Noro, N, Suzuki, M, Tsuda, S.
Deposit date:2006-01-18
Release date:2006-02-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Thermal Stabilization of Bacillus subtilis Family-11 Xylanase by Directed Evolution
J.Biol.Chem., 281, 2006
2E5M
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BU of 2e5m by Molmil
Crystal structure of isocitrate dehydrogenase from Sulfolobus tokodaii strain 7
Descriptor: 409aa long hypothetical NADP-dependent isocitrate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Kouyama, T, Kondo, H.
Deposit date:2006-12-22
Release date:2008-01-15
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structures of the Putative Isocitrate Dehydrogenase fromSulfolobus tokodaiiStrain 7 in the Apo and NADP+-Bound Forms.
Archaea, 2018, 2018
1E32
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BU of 1e32 by Molmil
Structure of the N-Terminal domain and the D1 AAA domain of membrane fusion ATPase p97
Descriptor: ADENOSINE-5'-DIPHOSPHATE, P97
Authors:Zhang, X, Shaw, A, Bates, P.A, Gorman, M.A, Kondo, H, Dokurno, P, Leonard M, G, Sternberg, J.E, Freemont, P.S.
Deposit date:2000-06-05
Release date:2001-05-31
Last modified:2019-07-24
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure of the Aaa ATPase P97
Mol.Cell, 6, 2000
1R7R
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BU of 1r7r by Molmil
The crystal structure of murine p97/VCP at 3.6A
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Transitional endoplasmic reticulum ATPase
Authors:Huyton, T, Pye, V.E, Briggs, L.C, Flynn, T.C, Beuron, F, Kondo, H, Ma, J, Zhang, X, Freemont, P.S.
Deposit date:2003-10-22
Release date:2003-12-16
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:The crystal structure of murine p97/VCP at 3.6A
J.Struct.Biol., 144, 2003
1S3S
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BU of 1s3s by Molmil
Crystal structure of AAA ATPase p97/VCP ND1 in complex with p47 C
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)- ATPase p97 subunit) (Valosin containing protein) (VCP) [Contains: Valosin], p47 protein
Authors:Dreveny, I, Kondo, H, Uchiyama, K, Shaw, A, Zhang, X, Freemont, P.S.
Deposit date:2004-01-14
Release date:2004-03-30
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural basis of the interaction between the AAA ATPase p97/VCP and its adaptor protein p47.
Embo J., 23, 2004
7BWY
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BU of 7bwy by Molmil
Crystal structure of ice-binding protein from an Antarctic ascomycete, Antarctomyces psychrotrophicus.
Descriptor: GLYCEROL, Ice-binding protein isoform1a
Authors:Yamauchi, A, Arai, T, Kondo, H, Tsuda, S.
Deposit date:2020-04-16
Release date:2020-05-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:An Ice-Binding Protein from an Antarctic Ascomycete Is Fine-Tuned to Bind to Specific Water Molecules Located in the Ice Prism Planes.
Biomolecules, 10, 2020
7BWX
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BU of 7bwx by Molmil
Crystal structure of ice-binding protein from an Antarctic ascomycete, Antarctomyces psychrotrophicus.
Descriptor: GLYCEROL, Ice-binding protein isoform1a, SULFATE ION
Authors:Yamauchi, A, Arai, T, Kondo, H, Tsuda, S.
Deposit date:2020-04-16
Release date:2020-05-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.904 Å)
Cite:An Ice-Binding Protein from an Antarctic Ascomycete Is Fine-Tuned to Bind to Specific Water Molecules Located in the Ice Prism Planes.
Biomolecules, 10, 2020
2J2M
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BU of 2j2m by Molmil
Crystal Structure Analysis of Catalase from Exiguobacterium oxidotolerans
Descriptor: CATALASE, PROTOPORPHYRIN IX CONTAINING FE
Authors:Hara, I, Ichise, N, Kojima, K, Kondo, H, Ohgiya, S, Matsuyama, H, Yumoto, I.
Deposit date:2006-08-17
Release date:2007-01-16
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Relationship between the Size of the Bottleneck 15 a from Iron in the Main Channel and the Reactivity of Catalase Corresponding to the Molecular Size of Substrates.
Biochemistry, 46, 2007
2ZIB
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BU of 2zib by Molmil
Crystal structure analysis of calcium-independent type II antifreeze protein
Descriptor: SULFATE ION, Type II antifreeze protein
Authors:Nishimiya, Y, Sato, R, Kondo, H, Noro, N, Sugimoto, H, Suzuki, M, Tsuda, S.
Deposit date:2008-02-14
Release date:2008-08-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Crystal structure and mutational analysis of Ca2+-independent type II antifreeze protein from longsnout poacher, Brachyopsis rostratus
J.Mol.Biol., 382, 2008
3A0F
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BU of 3a0f by Molmil
The crystal structure of Geotrichum sp. M128 xyloglucanase
Descriptor: Xyloglucanase
Authors:Yaoi, K, Kondo, H, Hiyoshi, A, Noro, N, Sugimoto, H, Tsuda, S, Miyazaki, K.
Deposit date:2009-03-16
Release date:2009-09-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The crystal structure of a xyloglucan-specific endo-beta-1,4-glucanase from Geotrichum sp. M128 xyloglucanase reveals a key amino acid residue for substrate specificity
Febs J., 276, 2009
1ULZ
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BU of 1ulz by Molmil
Crystal structure of the biotin carboxylase subunit of pyruvate carboxylase
Descriptor: pyruvate carboxylase n-terminal domain
Authors:Kondo, S, Nakajima, Y, Sugio, S, Yong-Biao, J, Sueda, S, Kondo, H.
Deposit date:2003-09-18
Release date:2004-03-09
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of the biotin carboxylase subunit of pyruvate carboxylase from Aquifex aeolicus at 2.2 A resolution.
Acta Crystallogr.,Sect.D, 60, 2004
3W3D
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BU of 3w3d by Molmil
Crystal structure of smooth muscle G actin DNase I complex
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Actin, gamma-enteric smooth muscle, ...
Authors:Sakabe, N, Sakabe, K, Sasaki, K, Kondo, H, Shimomur, M.
Deposit date:2012-12-20
Release date:2013-01-30
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Refined structure and solvent network of chicken gizzard G-actin DNase 1 complex at 1.8A resolution
Acta Crystallogr.,Sect.A, 49, 1993
1J1P
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BU of 1j1p by Molmil
Crystal structure of HyHEL-10 Fv mutant LS91A complexed with hen egg white lysozyme
Descriptor: Ig VH,anti-lysozyme, Lysozyme C, lysozyme binding Ig kappa chain V23-J2 region
Authors:Yokota, A, Tsumoto, K, Shiroishi, M, Kondo, H, Kumagai, I.
Deposit date:2002-12-13
Release date:2003-01-14
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Role of Hydrogen Bonding via Interfacial Water Molecules in Antigen-Antibody Complexation. THE HyHEL-10-HEL INTERACTION
J.BIOL.CHEM., 278, 2003
1J1O
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BU of 1j1o by Molmil
Crystal Structure of HyHEL-10 Fv mutant LY50F complexed with hen egg white lysozyme
Descriptor: Ig VH,anti-lysozyme, Lysozyme C, lysozyme binding Ig kappa chain V23-J2 region
Authors:Yokota, A, Tsumoto, K, Shiroishi, M, Kondo, H, Kumagai, I.
Deposit date:2002-12-13
Release date:2003-01-14
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Role of Hydrogen Bonding via Interfacial Water Molecules in Antigen-Antibody Complexation. THE HyHEL-10-HEL INTERACTION
J.BIOL.CHEM., 278, 2003
1J1X
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BU of 1j1x by Molmil
Crystal Structure of HyHEL-10 Fv mutant LS93A complexed with hen egg white lysozyme
Descriptor: Ig VH,anti-lysozyme, Lysozyme C, lysozyme binding Ig kappa chain V23-J2 region
Authors:Yokota, A, Tsumoto, K, Shiroishi, M, Kondo, H, Kumagai, I.
Deposit date:2002-12-20
Release date:2003-01-14
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Role of Hydrogen Bonding via Interfacial Water Molecules in Antigen-Antibody Complexation. THE HyHEL-10-HEL INTERACTION
J.BIOL.CHEM., 278, 2003
1JRU
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BU of 1jru by Molmil
NMR STRUCTURE OF THE UBX DOMAIN FROM P47 (ENERGY MINIMISED AVERAGE)
Descriptor: p47 protein
Authors:Yuan, X.M, Shaw, A, Zhang, X.D, Kondo, H, Lally, J, Freemont, P.S, Matthews, S.J.
Deposit date:2001-08-15
Release date:2001-08-17
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution structure and interaction surface of the C-terminal domain from p47: a major p97-cofactor involved in SNARE disassembly.
J.Mol.Biol., 311, 2001
5AYU
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BU of 5ayu by Molmil
Crystal structure of HyHEL-10 Fv
Descriptor: GLYCEROL, Ig VH,anti-lysozyme, lysozyme binding Ig kappa chain V23-J2 region
Authors:Nakanishi, T, Tsumoto, K, Yokota, A, Kondo, H, Kumagai, I.
Deposit date:2015-09-04
Release date:2016-09-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of HyHEL-10 Fv
To Be Published

 

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