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5X5X
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BU of 5x5x by Molmil
Crystal structure of the Fab fragment of anti-osteocalcin C-terminal peptide antibody KTM219
Descriptor: DI(HYDROXYETHYL)ETHER, FORMIC ACID, Fd chain of anti-osteocalcin antibody KTM219, ...
Authors:Komatsu, M, Dong, J, Ueda, H, Arai, R.
Deposit date:2017-02-18
Release date:2018-02-21
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the Fab fragment of anti-osteocalcin C-terminal peptide antibody KTM219
To be published
4ZY3
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BU of 4zy3 by Molmil
Crystal Structure of Keap1 in Complex with a small chemical compound, K67
Descriptor: FORMIC ACID, Kelch-like ECH-associated protein 1, N,N'-[2-(2-oxopropyl)naphthalene-1,4-diyl]bis(4-ethoxybenzenesulfonamide)
Authors:Fukutomi, T, Iso, T, Suzuki, T, Takagi, K, Mizushima, T, Komatsu, M, Yamamoto, M.
Deposit date:2015-05-21
Release date:2016-05-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:p62/Sqstm1 promotes malignancy of HCV-positive hepatocellular carcinoma through Nrf2-dependent metabolic reprogramming
Nat Commun, 7, 2016
3B0F
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BU of 3b0f by Molmil
Crystal structure of the UBA domain of p62 and its interaction with ubiquitin
Descriptor: SULFATE ION, Sequestosome-1
Authors:Isogai, S, Morimoto, D, Arita, K, Unzai, S, Tenno, T, Hasegawa, J, Sou, Y, Komatsu, M, Tanaka, K, Shirakawa, M, Tochio, H.
Deposit date:2011-06-09
Release date:2011-06-29
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of the ubiquitin-associated (UBA) domain of p62 and its interaction with ubiquitin.
J.Biol.Chem., 286, 2011
2RRU
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BU of 2rru by Molmil
Solution structure of the UBA omain of p62 and its interaction with ubiquitin
Descriptor: Sequestosome-1
Authors:Isogai, S, Morimoto, D, Arita, K, Unzai, S, Tenno, T, Hasegawa, J, Sou, Y, Komatsu, M, Tanaka, K, Shirakawa, M, Tochio, H.
Deposit date:2011-06-09
Release date:2011-06-29
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Crystal structure of the UBA omain of p62 and its interaction with ubiquitin
To be Published
3WDZ
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BU of 3wdz by Molmil
Crystal Structure of Keap1 in Complex with phosphorylated p62
Descriptor: Kelch-like ECH-associated protein 1, Peptide from Sequestosome-1
Authors:Fukutomi, T, Takagi, K, Mizushima, T, Tanaka, K, Komatsu, M, Yamamoto, M.
Deposit date:2013-06-26
Release date:2013-09-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Phosphorylation of p62 activates the Keap1-Nrf2 pathway during selective autophagy.
Mol.Cell, 51, 2013
1WXS
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BU of 1wxs by Molmil
Solution Structure of Ufm1, a ubiquitin-fold modifier
Descriptor: Ubiquitin-fold Modifier 1
Authors:Sasakawa, H, Sakata, E, Yamaguchi, Y, Komatsu, M, Tatsumi, K, Kominami, E, Tanaka, K, Kato, K.
Deposit date:2005-02-01
Release date:2006-04-18
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution structure and dynamics of Ufm1, a ubiquitin-fold modifier 1
Biochem.Biophys.Res.Commun., 343, 2006
3WIM
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BU of 3wim by Molmil
GABARAP-LIR peptide complex
Descriptor: Gamma-aminobutyric acid receptor-associated protein, WD repeat and FYVE domain-containing protein 3
Authors:Lystad, A, Ichimura, Y, Takagi, K, Yang, Y, Pankiv, S, Mizushima, T, Komatsu, M, Simonsen, A.
Deposit date:2013-09-19
Release date:2014-03-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:GABARAP-LIR peptide complex
To be Published, 2014
2D1I
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BU of 2d1i by Molmil
Structure of human Atg4b
Descriptor: Cysteine protease APG4B
Authors:Kumanomidou, T, Mizushima, T, Komatsu, M, Suzuki, A, Tanida, I, Sou, Y.S, Ueno, T, Kominami, E, Tanaka, K, Yamane, T.
Deposit date:2005-08-24
Release date:2006-01-10
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Crystal Structure of Human Atg4b, a Processing and De-conjugating Enzyme for Autophagosome-forming Modifiers
J.Mol.Biol., 355, 2006
2Z6P
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BU of 2z6p by Molmil
Crystal Structure of the Ufc1, Ufm1 conjugating enzyme 1
Descriptor: Ufm1-conjugating enzyme 1
Authors:Mizushima , T, Tatsumi, K, Ozaki, Y, Kawakami, T, Suzuki, A, Ogasahara, K, Komatsu, M, Kominami, E, Tanaka, K, Yamane, T.
Deposit date:2007-08-06
Release date:2007-09-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of Ufc1, the Ufm1-conjugating enzyme
Biochem.Biophys.Res.Commun., 362, 2007
2Z6O
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BU of 2z6o by Molmil
Crystal Structure of the Ufc1, Ufm1 conjugating enzyme 1
Descriptor: MAGNESIUM ION, Ufm1-conjugating enzyme 1
Authors:Mizushima , T, Tatsumi, K, Ozaki, Y, Kawakami, T, Suzuki, A, Ogasahara, K, Komatsu, M, Kominami, E, Tanaka, K, Yamane, T.
Deposit date:2007-08-06
Release date:2007-09-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of Ufc1, the Ufm1-conjugating enzyme
Biochem.Biophys.Res.Commun., 362, 2007
2ZJD
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BU of 2zjd by Molmil
Crystal Structure of LC3-p62 complex
Descriptor: Microtubule-associated proteins 1A/1B light chain 3B precursor, undecameric peptide from Sequestosome-1
Authors:Ichimura, Y, Kumanomidou, T, Sou, Y, Mizushima, T, Ezaki, J, Ueno, T, Kominami, E, Yamane, T, Tanaka, K, Komatsu, M.
Deposit date:2008-03-05
Release date:2008-06-03
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Structural Basis for Sorting Mechanism of p62 in Selective Autophagy
J.Biol.Chem., 283, 2008
3ADE
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BU of 3ade by Molmil
Crystal Structure of Keap1 in Complex with Sequestosome-1/p62
Descriptor: Kelch-like ECH-associated protein 1, SULFATE ION, Sequestosome-1
Authors:Kurokawa, H, Yamamoto, M.
Deposit date:2010-01-19
Release date:2010-03-16
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The selective autophagy substrate p62 activates the stress responsive transcription factor Nrf2 through inactivation of Keap1
Nat.Cell Biol., 12, 2010
5HKH
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BU of 5hkh by Molmil
Crystal structure of Ufm1 in complex with UBA5
Descriptor: ASP-ASN-GLU-TRP-GLY-ILE-GLU-LEU-VAL, Ubiquitin-fold modifier 1
Authors:Huber, J, Doetsch, V, Rogov, V.V, Akutsu, M.
Deposit date:2016-01-14
Release date:2016-03-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structural and Functional Analysis of a Novel Interaction Motif within UFM1-activating Enzyme 5 (UBA5) Required for Binding to Ubiquitin-like Proteins and Ufmylation.
J.Biol.Chem., 291, 2016
7W3N
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BU of 7w3n by Molmil
Crystal structure of Ufm1 fused to UFBP1 UFIM
Descriptor: UFBP1 peptide,Ubiquitin-fold modifier 1
Authors:Noda, N.N.
Deposit date:2021-11-25
Release date:2022-12-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The UFM1 system regulates ER-phagy through the ufmylation of CYB5R3.
Nat Commun, 13, 2022
7W3O
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BU of 7w3o by Molmil
Crystal structure of human CYB5R3
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, NADH-cytochrome b5 reductase 3 soluble form
Authors:Noda, N.N.
Deposit date:2021-11-25
Release date:2022-12-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.46 Å)
Cite:The UFM1 system regulates ER-phagy through the ufmylation of CYB5R3.
Nat Commun, 13, 2022
3OQC
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BU of 3oqc by Molmil
Ubiquitin-fold modifier 1 Specific Protease, UfSP2
Descriptor: Ufm1-specific protease 2
Authors:Ha, B.H, Chung, C.H, Kim, E.E.
Deposit date:2010-09-02
Release date:2011-01-12
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of ubiquitin-fold modifier 1-specific protease UfSP2
J.Biol.Chem., 286, 2011
6HB9
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BU of 6hb9 by Molmil
Crystal structure of the GABARAP in complex with the UBA5 LIR motif
Descriptor: Gamma-aminobutyric acid receptor-associated protein
Authors:Huber, J, Rogov, V, Akutsu, M.
Deposit date:2018-08-10
Release date:2019-05-01
Last modified:2020-01-29
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:An atypical LIR motif within UBA5 (ubiquitin like modifier activating enzyme 5) interacts with GABARAP proteins and mediates membrane localization of UBA5.
Autophagy, 16, 2020
6H8C
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BU of 6h8c by Molmil
Structure of the human GABARAPL2 protein in complex with the UBA5 LIR motif
Descriptor: Gamma-aminobutyric acid receptor-associated protein-like 2, Ubiquitin-like modifier-activating enzyme 5
Authors:Huber, J, Loehr, F, Gruber, J, Akutsu, M, Guentert, P, Doetsch, V, Rogov, V.V.
Deposit date:2018-08-02
Release date:2019-05-01
Last modified:2020-01-29
Method:SOLUTION NMR
Cite:An atypical LIR motif within UBA5 (ubiquitin like modifier activating enzyme 5) interacts with GABARAP proteins and mediates membrane localization of UBA5.
Autophagy, 16, 2020
2ZJ3
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BU of 2zj3 by Molmil
Isomerase domain of human glucose:fructose-6-phosphate amidotransferase
Descriptor: 6-O-phosphono-alpha-D-glucopyranose, Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1
Authors:Nakaishi, Y, Bando, M, Kondo, K, Tsuge, H.
Deposit date:2008-02-29
Release date:2009-01-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural analysis of human glutamine:fructose-6-phosphate amidotransferase, a key regulator in type 2 diabetes
Febs Lett., 583, 2009
2ZJ4
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BU of 2zj4 by Molmil
Isomerase domain of human glucose:fructose-6-phosphate amidotransferase
Descriptor: 2-DEOXY-2-AMINO GLUCITOL-6-PHOSPHATE, Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1
Authors:Nakaishi, Y, Bando, M, Kondo, K, Tsuge, H.
Deposit date:2008-02-29
Release date:2009-01-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural analysis of human glutamine:fructose-6-phosphate amidotransferase, a key regulator in type 2 diabetes
Febs Lett., 583, 2009
7YO8
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BU of 7yo8 by Molmil
Crystal structure of fission yeast Hfl1 LIR fused to human GABARAPL2
Descriptor: Transmembrane protein 184 homolog C30D11.06c,Gamma-aminobutyric acid receptor-associated protein-like 2
Authors:Yamasaki, A, Noda, N.N.
Deposit date:2022-08-01
Release date:2022-11-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.805 Å)
Cite:Development of new tools to study membrane-anchored mammalian Atg8 proteins.
Autophagy, 19, 2023
7YO9
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BU of 7yo9 by Molmil
Crystal structure of fusion protein of human TP53INP2 LIR and human GABARAP
Descriptor: ISOPROPYL ALCOHOL, PHOSPHATE ION, Tumor protein p53-inducible nuclear protein 2,Gamma-aminobutyric acid receptor-associated protein
Authors:Yamasaki, A, Noda, N.N.
Deposit date:2022-08-01
Release date:2022-11-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Development of new tools to study membrane-anchored mammalian Atg8 proteins.
Autophagy, 19, 2023
2MGW
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BU of 2mgw by Molmil
Solution Structure of the UBA Domain of Human NBR1
Descriptor: Next to BRCA1 gene 1 protein
Authors:Walinda, E, Morimoto, D, Sugase, K, Komatsu, M, Tochio, H, Shirakawa, M.
Deposit date:2013-11-09
Release date:2014-04-09
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structure of the ubiquitin-associated (UBA) domain of human autophagy receptor NBR1 and its interaction with ubiquitin and polyubiquitin.
J.Biol.Chem., 289, 2014
2MJ5
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BU of 2mj5 by Molmil
Structure of the UBA Domain of Human NBR1 in Complex with Ubiquitin
Descriptor: Next to BRCA1 gene 1 protein, Polyubiquitin-C
Authors:Walinda, E, Morimoto, D, Sugase, K, Komatsu, M, Tochio, H, Shirakawa, M.
Deposit date:2013-12-25
Release date:2014-04-09
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structure of the ubiquitin-associated (UBA) domain of human autophagy receptor NBR1 and its interaction with ubiquitin and polyubiquitin.
J.Biol.Chem., 289, 2014

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