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1D3L
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BU of 1d3l by Molmil
D1D2-ICAM-1 FULLY GLYCOSYLATED, VARIATION OF D1-D2 INTERDOMAIN ANGLE IN DIFFERENT CRYSTAL STRUCTURES.
Descriptor: PROTEIN (INTERCELLULAR ADHESION MOLECULE-1)
Authors:Bella, J, Kolatkar, P.R, Rossmann, M.G.
Deposit date:1999-09-29
Release date:1999-12-01
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Structural studies of two rhinovirus serotypes complexed with fragments of their cellular receptor.
EMBO J., 18, 1999
8JLY
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BU of 8jly by Molmil
Structure of nanobody in complex with alpha-synuclein peptide
Descriptor: GLYCEROL, Nanobody, alpha-synuclein peptide
Authors:Islam, Z, Kolatkar, P.R.
Deposit date:2023-06-04
Release date:2024-01-10
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.29 Å)
Cite:Structural insights into the unique recognition module between alpha-synuclein peptide and nanobody.
Protein Sci., 33, 2024
8JJV
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BU of 8jjv by Molmil
Structure of truncated form of nanobody in complex with alpha-synuclein peptide
Descriptor: Alpha-synuclein peptide, GLYCEROL, Nanobody
Authors:Islam, Z, Kolatkar, P.R.
Deposit date:2023-05-31
Release date:2024-01-10
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.23 Å)
Cite:Structural insights into the unique recognition module between alpha-synuclein peptide and nanobody.
Protein Sci., 33, 2024
6L6Y
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BU of 6l6y by Molmil
Crystal Structure of Pluripotency Reprogramming Factor Sox17 mutant (Sox17EK) HMG Domain bound to DNA
Descriptor: DNA (5'-D(*CP*CP*AP*GP*GP*AP*CP*AP*AP*TP*AP*GP*AP*GP*AP*C)-3'), DNA (5'-D(P*GP*GP*TP*CP*TP*CP*TP*AP*TP*TP*GP*TP*CP*CP*TP*G)-3'), SULFATE ION, ...
Authors:Balasubramanian, M, Kolatkar, P.R.
Deposit date:2019-10-29
Release date:2020-11-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal Structure of Pluripotency Reprogramming Factor Sox17 mutant (Sox17EK) HMG Domain bound to DNA
To Be Published
4S2Q
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BU of 4s2q by Molmil
Crystal Structure of HMG domain of the chondrogenesis master regulator, Sox9 in complex with ChIP-Seq identified DNA element
Descriptor: DNA (5'-D(P*AP*GP*GP*AP*GP*AP*AP*CP*AP*AP*AP*GP*CP*CP*TP*G)-3'), DNA (5'-D(P*AP*GP*GP*CP*TP*TP*TP*GP*TP*TP*CP*TP*CP*CP*TP*G)-3'), Transcription factor SOX-9
Authors:Vivekanandan, S, Moovarkumudalvan, B, Lescar, J, Kolatkar, P.R.
Deposit date:2015-01-21
Release date:2016-02-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal Structure of HMG domain of the chondrogenesis master regulator, Sox9 in complex with ChIP-Seq identified DNA element
To be Published
3F27
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BU of 3f27 by Molmil
Structure of Sox17 Bound to DNA
Descriptor: DNA (5'-D(*DCP*DCP*DAP*DGP*DGP*DAP*DCP*DAP*DAP*DTP*DAP*DGP*DAP*DGP*DAP*DC)-3'), DNA (5'-D(*DGP*DTP*DCP*DTP*DCP*DTP*DAP*DTP*DTP*DGP*DTP*DCP*DCP*DTP*DGP*DG)-3'), Transcription factor SOX-17
Authors:Palasingam, P, Jauch, R, Ng, C.K.L, Kolatkar, P.R.
Deposit date:2008-10-29
Release date:2009-04-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:The Structure of Sox17 Bound to DNA Reveals a Conserved Bending Topology but Selective Protein Interaction Platforms
J.Mol.Biol., 388, 2009
3KMP
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BU of 3kmp by Molmil
Crystal Structure of SMAD1-MH1/DNA complex
Descriptor: 5'-D(P*AP*TP*CP*AP*GP*TP*CP*TP*AP*GP*AP*CP*AP*TP*A)-3', 5'-D(P*GP*TP*AP*TP*GP*TP*CP*TP*AP*GP*AP*CP*TP*GP*A)-3', GLYCEROL, ...
Authors:Baburajendran, N, Palasingam, P, Narasimhan, K, Jauch, R, Kolatkar, P.R.
Deposit date:2009-11-11
Release date:2010-02-23
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of Smad1 MH1/DNA complex reveals distinctive rearrangements of BMP and TGF-beta effectors.
Nucleic Acids Res., 38, 2010
3QSV
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BU of 3qsv by Molmil
Structural basis for DNA recognition by constitutive Smad4 MH1 dimers
Descriptor: DNA (5'-D(P*TP*GP*CP*AP*GP*TP*CP*TP*AP*GP*AP*CP*TP*GP*CP*A)-3'), Mothers against decapentaplegic homolog 4, ZINC ION
Authors:Baburajendran, N, Jauch, R, Zhen, C.T.Y, Kolatkar, P.R.
Deposit date:2011-02-22
Release date:2011-06-22
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.708 Å)
Cite:Structural basis for DNA recognition by constitutive Smad4 MH1 dimers
To be Published
2VI6
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BU of 2vi6 by Molmil
Crystal Structure of the Nanog Homeodomain
Descriptor: HOMEOBOX PROTEIN NANOG
Authors:Jauch, R, Ng, C.K.L, Saitakendu, K.S, Stevens, R.C, Kolatkar, P.R.
Deposit date:2007-11-28
Release date:2008-01-15
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure and DNA Binding of the Homeodomain of the Stem Cell Transcription Factor Nanog.
J.Mol.Biol., 376, 2008
2XSD
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BU of 2xsd by Molmil
Crystal Structure of the dimeric Oct-6 (Pou3f1) POU domain bound to palindromic MORE DNA
Descriptor: 1,2-ETHANEDIOL, 5'-D(*AP*TP*GP*CP*AP*TP*GP*AP*GP*GP*AP)-3', 5'-D(*CP*CP*TP*CP*AP*TP*GP*CP*AP*TP*AP)-3', ...
Authors:Jauch, R, Choo, S.H, Ng, C.K.L, Kolatkar, P.R.
Deposit date:2010-09-28
Release date:2010-10-20
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.049 Å)
Cite:Crystal Structure of the Dimeric Oct6 (POU3F1) POU Domain Bound to Palindromic More DNA.
Proteins, 79, 2011
3U2B
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BU of 3u2b by Molmil
Structure of the Sox4 HMG domain bound to DNA
Descriptor: DNA (5'-D(*CP*CP*AP*GP*GP*AP*CP*AP*AP*TP*AP*GP*AP*GP*AP*C)-3'), DNA (5'-D(*GP*TP*CP*TP*CP*TP*AP*TP*TP*GP*TP*CP*CP*TP*GP*G)-3'), Transcription factor SOX-4
Authors:Jauch, R, Ng, C.K.L, Kolatkar, P.R.
Deposit date:2011-10-03
Release date:2011-12-28
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.402 Å)
Cite:The crystal structure of the Sox4 HMG domain-DNA complex suggests a mechanism for positional interdependence in DNA recognition
Biochem.J., 443, 2012
4AYA
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BU of 4aya by Molmil
Crystal structure of ID2 HLH homodimer at 2.1A resolution
Descriptor: ACETATE ION, DNA-BINDING PROTEIN INHIBITOR ID-2, POTASSIUM ION
Authors:Wong, M.V, Jiang, S, Palasingam, P, Kolatkar, P.R.
Deposit date:2012-06-19
Release date:2012-11-14
Method:X-RAY DIFFRACTION (2.103 Å)
Cite:A Divalent Ion is Crucial in the Structure and Dominant-Negative Function of Id Proteins, a Class of Helix-Loop-Helix Transcription Regulators.
Plos One, 7, 2012
4E6S
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BU of 4e6s by Molmil
Crystal structure of the SCAN domain from mouse Zfp206
Descriptor: Zinc finger and SCAN domain-containing protein 10
Authors:Liang, Y, Choo, S.H, Rossbach, M, Baburajendran, N, Palasingam, P, Kolatkar, P.R.
Deposit date:2012-03-15
Release date:2012-05-02
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal optimization and preliminary diffraction data analysis of the SCAN domain of Zfp206.
Acta Crystallogr.,Sect.F, 68, 2012
1OSY
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BU of 1osy by Molmil
Crystal structure of FIP-Fve fungal immunomodulatory protein
Descriptor: BROMIDE ION, IMMUNOMODULATORY PROTEIN FIP-FVE
Authors:Palasingam, P, Joseph, J.S, Seow, S.V, Shai, V, Robinson, H, Chua, K.Y, Kolatkar, P.R.
Deposit date:2003-03-20
Release date:2003-11-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A 1.7A structure of Fve, a member of the new fungal immunomodulatory protein family
J.Mol.Biol., 332, 2003
1SB2
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BU of 1sb2 by Molmil
High resolution Structure determination of rhodocetin
Descriptor: Rhodocetin alpha subunit, Rhodocetin beta subunit
Authors:Paaventhan, P, Kong, C.G, Joseph, J.S, Chung, M.C.M, Kolatkar, P.R.
Deposit date:2004-02-10
Release date:2005-02-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of rhodocetin reveals noncovalently bound heterodimer interface
Protein Sci., 14, 2005
1IAM
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BU of 1iam by Molmil
STRUCTURE OF THE TWO AMINO-TERMINAL DOMAINS OF HUMAN INTERCELLULAR ADHESION MOLECULE-1, ICAM-1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, INTERCELLULAR ADHESION MOLECULE-1
Authors:Bella, J, Kolatkar, P.R, Marlor, C, Greve, J.M, Rossmann, M.G.
Deposit date:1998-02-22
Release date:1998-04-29
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The structure of the two amino-terminal domains of human ICAM-1 suggests how it functions as a rhinovirus receptor and as an LFA-1 integrin ligand.
Proc.Natl.Acad.Sci.USA, 95, 1998
1F94
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BU of 1f94 by Molmil
THE 0.97 RESOLUTION STRUCTURE OF BUCANDIN, A NOVEL TOXIN ISOLATED FROM THE MALAYAN KRAIT
Descriptor: BUCANDIN
Authors:Kuhn, P, Deacon, A.M, Comoso, S, Rajaseger, G, Kini, R.M, Uson, I, Kolatkar, P.R.
Deposit date:2000-07-06
Release date:2000-07-26
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (0.97 Å)
Cite:The atomic resolution structure of bucandin, a novel toxin isolated from the Malayan krait, determined by direct methods.
Acta Crystallogr.,Sect.D, 56, 2000
1D3E
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BU of 1d3e by Molmil
CRYO-EM STRUCTURE OF HUMAN RHINOVIRUS 16 (HRV16) COMPLEXED WITH A TWO-DOMAIN FRAGMENT OF ITS CELLULAR RECEPTOR, INTERCELLULAR ADHESION MOLECULE-1 (D1D2-ICAM-1). IMPLICATIONS FOR VIRUS-RECEPTOR INTERACTIONS. ALPHA CARBONS ONLY
Descriptor: PROTEIN (INTERCELLULAR ADHESION MOLECULE-1), PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP1), PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP2), ...
Authors:Bella, J, Rossmann, M.G.
Deposit date:1999-09-29
Release date:2000-01-19
Last modified:2022-12-21
Method:ELECTRON MICROSCOPY (28 Å)
Cite:Structural studies of two rhinovirus serotypes complexed with fragments of their cellular receptor.
EMBO J., 18, 1999
1D3I
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BU of 1d3i by Molmil
CRYO-EM STRUCTURE OF HUMAN RHINOVIRUS 14 (HRV14) COMPLEXED WITH A TWO-DOMAIN FRAGMENT OF ITS CELLULAR RECEPTOR, INTERCELLULAR ADHESION MOLECULE-1 (D1D2-ICAM-1). IMPLICATIONS FOR VIRUS-RECEPTOR INTERACTIONS. ALPHA CARBONS ONLY
Descriptor: PROTEIN (INTERCELLULAR ADHESION MOLECULE-1), PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP1), PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP2), ...
Authors:Bella, J, Rossmann, M.G.
Deposit date:1999-09-29
Release date:2000-01-19
Last modified:2024-02-07
Method:ELECTRON MICROSCOPY (26 Å)
Cite:Structural studies of two rhinovirus serotypes complexed with fragments of their cellular receptor.
EMBO J., 18, 1999
1ITH
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BU of 1ith by Molmil
STRUCTURE DETERMINATION AND REFINEMENT OF HOMOTETRAMERIC HEMOGLOBIN FROM URECHIS CAUPO AT 2.5 ANGSTROMS RESOLUTION
Descriptor: CYANIDE ION, HEMOGLOBIN (CYANO MET), PROTOPORPHYRIN IX CONTAINING FE
Authors:Hackert, M, Kolatkar, P, Ernst, S.R, Ogata, C.M, Hendrickson, W.A, Merritt, E.A, Phizackerley, R.P.
Deposit date:1991-12-03
Release date:1993-10-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure determination and refinement of homotetrameric hemoglobin from Urechis caupo at 2.5 A resolution.
Acta Crystallogr.,Sect.B, 48, 1992
4Y60
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BU of 4y60 by Molmil
Structure of SOX18-HMG/PROX1-DNA
Descriptor: DNA (5'-D(*CP*AP*CP*TP*AP*GP*CP*AP*TP*TP*GP*TP*CP*TP*GP*GP*G)-3'), DNA (5'-D(*GP*CP*CP*CP*AP*GP*AP*CP*AP*AP*TP*GP*CP*TP*AP*GP*T)-3'), Transcription factor SOX-18
Authors:Narasimhan, K, Prokoph, N, Kolatkar, P, Robinson, H, Jauch, R.
Deposit date:2015-02-12
Release date:2016-03-02
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structure and decoy-mediated inhibition of the SOX18/Prox1-DNA interaction.
Nucleic Acids Res., 44, 2016
1AYN
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BU of 1ayn by Molmil
HUMAN RHINOVIRUS 16 COAT PROTEIN
Descriptor: HUMAN RHINOVIRUS 16 COAT PROTEIN, LAURIC ACID, MYRISTIC ACID, ...
Authors:Hadfield, A.T, Oliveira, M.A, Zhao, R, Rossmann, M.G.
Deposit date:1997-11-06
Release date:1998-01-21
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:The structure of human rhinovirus 16.
Structure, 1, 1993
1C8M
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BU of 1c8m by Molmil
REFINED CRYSTAL STRUCTURE OF HUMAN RHINOVIRUS 16 COMPLEXED WITH VP63843 (PLECONARIL), AN ANTI-PICORNAVIRAL DRUG CURRENTLY IN CLINICAL TRIALS
Descriptor: 3-{3,5-DIMETHYL-4-[3-(3-METHYL-ISOXAZOL-5-YL)-PROPOXY]-PHENYL}-5-TRIFLUOROMETHYL-[1,2,4]OXADIAZOLE, HUMAN RHINOVIRUS 16 COAT PROTEIN, ZINC ION
Authors:Chakravarty, S, Bator, C.M, Pevear, D.C, Diana, G.D, Rossmann, M.G.
Deposit date:2000-05-26
Release date:2000-11-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:THE REFINED STRUCTURE OF A PICORNAVIRUS INHIBITOR CURRENTLY IN CLINICAL TRIALS, WHEN COMPLEXED WITH HUMAN RHINOVIRUS 16
to be published
1AYM
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BU of 1aym by Molmil
HUMAN RHINOVIRUS 16 COAT PROTEIN AT HIGH RESOLUTION
Descriptor: HUMAN RHINOVIRUS 16 COAT PROTEIN, LAURIC ACID, MYRISTIC ACID, ...
Authors:Hadfield, A.T, Rossmann, M.G.
Deposit date:1997-11-06
Release date:1998-01-21
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:The refined structure of human rhinovirus 16 at 2.15 A resolution: implications for the viral life cycle.
Structure, 5, 1997
4A3N
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BU of 4a3n by Molmil
Crystal Structure of HMG-BOX of Human SOX17
Descriptor: TRANSCRIPTION FACTOR SOX-17, ZINC ION
Authors:Gao, N, Gao, H, Qian, H, Si, S, Xie, Y.
Deposit date:2011-10-01
Release date:2011-12-28
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural Basis of Human Transcription Factor Sry-Related Box 17 Binding to DNA.
Protein Pept.Lett., 20, 2013

 

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