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1DDE
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BU of 1dde by Molmil
STRUCTURE OF THE DNAG CATALYTIC CORE
Descriptor: DNA PRIMASE, YTTRIUM ION
Authors:Keck, J.L, Roche, D.D, Lynch, A.S, Berger, J.M.
Deposit date:1999-11-09
Release date:2000-04-07
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of the RNA polymerase domain of E. coli primase.
Science, 287, 2000
1DD9
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BU of 1dd9 by Molmil
STRUCTURE OF THE DNAG CATALYTIC CORE
Descriptor: DNA PRIMASE, STRONTIUM ION
Authors:Keck, J.L, Roche, D.D, Lynch, A.S, Berger, J.M.
Deposit date:1999-11-09
Release date:2000-04-07
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of the RNA polymerase domain of E. coli primase.
Science, 287, 2000
2FL7
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BU of 2fl7 by Molmil
S. cerevisiae Sir3 BAH domain
Descriptor: Regulatory protein SIR3
Authors:Keck, J.L, Hou, Z, Daner, J.R, Fox, C.A.
Deposit date:2006-01-05
Release date:2006-05-09
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure of the Sir3 protein bromo adjacent homology (BAH) domain from S. cerevisiae at 1.95 A resolution.
Protein Sci., 15, 2006
1TXY
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BU of 1txy by Molmil
E. coli PriB
Descriptor: Primosomal replication protein n
Authors:Keck, J.L, Lopper, M, Holton, J.M.
Deposit date:2004-07-06
Release date:2004-11-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of PriB, a component of the Escherichia coli replication restart primosome
Structure, 12, 2004
3PLW
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BU of 3plw by Molmil
Ref protein from P1 bacteriophage
Descriptor: Recombination enhancement function protein, SULFATE ION, ZINC ION
Authors:Keck, J.L, Lu, D, Cox, M.M.
Deposit date:2010-11-15
Release date:2010-12-29
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Creating Directed Double-strand Breaks with the Ref Protein: A NOVEL RecA-DEPENDENT NUCLEASE FROM BACTERIOPHAGE P1.
J.Biol.Chem., 286, 2011
2RHF
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BU of 2rhf by Molmil
D. radiodurans RecQ HRDC domain 3
Descriptor: DNA helicase RecQ, PHOSPHATE ION
Authors:Keck, J.L, Killoran, M.P.
Deposit date:2007-10-09
Release date:2008-04-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Structure and function of the regulatory C-terminal HRDC domain from Deinococcus radiodurans RecQ.
Nucleic Acids Res., 36, 2008
3C95
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BU of 3c95 by Molmil
Exonuclease I (apo)
Descriptor: Exodeoxyribonuclease I, MAGNESIUM ION
Authors:Keck, J.L, Lu, D.
Deposit date:2008-02-15
Release date:2008-07-08
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis of Escherichia coli single-stranded DNA-binding protein stimulation of exonuclease I.
Proc.Natl.Acad.Sci.USA, 105, 2008
3C9B
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BU of 3c9b by Molmil
Crystal structure of SeMet Vps75
Descriptor: Vacuolar protein sorting-associated protein 75
Authors:Keck, J.L, Berndsen, C.E, Tsubota, T, Lindner, S.E, Lee, S, Holton, J.M, Kaufman, P.D, Denu, J.M.
Deposit date:2008-02-15
Release date:2008-08-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:Molecular functions of the histone acetyltransferase chaperone complex Rtt109-Vps75
Nat.Struct.Mol.Biol., 15, 2008
4TMU
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BU of 4tmu by Molmil
Crystal structure of RecQ catalytic core from C. sakazakii bound to DNA
Descriptor: DNA (29-MER), RecQ, ZINC ION
Authors:Manthei, K.A, Keck, J.L.
Deposit date:2014-06-02
Release date:2015-03-11
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural mechanisms of DNA binding and unwinding in bacterial RecQ helicases.
Proc.Natl.Acad.Sci.USA, 112, 2015
7R7J
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BU of 7r7j by Molmil
Crystal structure of RadD with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Putative DNA repair helicase RadD, ...
Authors:Osorio Garcia, M.A, Satyshur, K.A, Keck, J.L, Cox, M.M.
Deposit date:2021-06-24
Release date:2022-04-13
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:X-ray crystal structure of the Escherichia coli RadD DNA repair protein bound to ADP reveals a novel zinc ribbon domain.
Plos One, 17, 2022
5JRJ
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BU of 5jrj by Molmil
Crystal Structure of Herbaspirillum seropedicae RecA
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, ...
Authors:Leite, W.C, Galvao, C.W, Saab, S.C, Iulek, J, Etto, R.M, Steffens, M.B.R, Chitteni-Pattu, S, Stanage, T, Keck, J.L, Cox, M.M.
Deposit date:2016-05-06
Release date:2016-08-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural and Functional Studies of H. seropedicae RecA Protein - Insights into the Polymerization of RecA Protein as Nucleoprotein Filament.
PLoS ONE, 11, 2016
1D3Y
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BU of 1d3y by Molmil
STRUCTURE OF THE DNA TOPOISOMERASE VI A SUBUNIT
Descriptor: DNA TOPOISOMERASE VI A SUBUNIT, MAGNESIUM ION, SODIUM ION
Authors:Nichols, M.D, DeAngelis, K.A, Keck, J.L, Berger, J.M.
Deposit date:1999-10-01
Release date:1999-11-05
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and function of an archaeal topoisomerase VI subunit with homology to the meiotic recombination factor Spo11.
EMBO J., 18, 1999
1F21
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BU of 1f21 by Molmil
DIVALENT METAL COFACTOR BINDING IN THE KINETIC FOLDING TRAJECTORY OF E. COLI RIBONUCLEASE HI
Descriptor: RIBONUCLEASE HI
Authors:Goedken, E.R, Keck, J.L, Berger, J.M, Marqusee, S.
Deposit date:2000-05-22
Release date:2000-12-06
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Divalent metal cofactor binding in the kinetic folding trajectory of Escherichia coli ribonuclease HI.
Protein Sci., 9, 2000
2NCJ
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BU of 2ncj by Molmil
Solution Structure of the PriC DNA replication restart protein
Descriptor: Uncharacterized protein
Authors:Cornilescu, C.C, Cornilescu, G, Wessel, S.R, Keck, J.L, Markley, J.L.
Deposit date:2016-04-07
Release date:2016-07-06
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structure and Function of the PriC DNA Replication Restart Protein.
J.Biol.Chem., 291, 2016
2OXJ
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BU of 2oxj by Molmil
Helix Bundle Quaternary Structure from alpha/beta-Peptide Foldamers: GCN4-p1 with beta-residues at b and f heptad positions.
Descriptor: ACETATE ION, hybrid alpha/beta peptide based on the GCN4-p1 sequence; heptad positions b and f substituted with beta-amino acids
Authors:Horne, W.S, Price, J.L, Keck, J.L, Gellman, S.H.
Deposit date:2007-02-20
Release date:2007-03-27
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Helix Bundle Quaternary Structure from alpha/beta-Peptide Foldamers.
J.Am.Chem.Soc., 129, 2007
2OXK
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BU of 2oxk by Molmil
Helix Bundle Quaternary Structure from alpha/beta-Peptide Foldamers: GCN4-pLI with beta-residues at b and f heptad positions.
Descriptor: FORMIC ACID, hybrid alpha/beta peptide based on the GCN4-pLI sequence; heptad positions b and f substituted with beta-amino acids
Authors:Horne, W.S, Price, J.L, Keck, J.L, Gellman, S.H.
Deposit date:2007-02-20
Release date:2007-03-27
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Helix Bundle Quaternary Structure from alpha/beta-Peptide Foldamers.
J.Am.Chem.Soc., 129, 2007
4Z0U
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BU of 4z0u by Molmil
RNase HI/SSB-Ct complex
Descriptor: Ribonuclease H, SSB-Ct Peptide
Authors:Petzold, C, Keck, J.L.
Deposit date:2015-03-26
Release date:2015-04-29
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Interaction with Single-stranded DNA-binding Protein Stimulates Escherichia coli Ribonuclease HI Enzymatic Activity.
J.Biol.Chem., 290, 2015
8FAK
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BU of 8fak by Molmil
DNA replication fork binding triggers structural changes in the PriA DNA helicase that regulate the PriA-PriB replication restart pathway in E. coli
Descriptor: DNA (5'-D(P*CP*AP*GP*AP*CP*TP*CP*AP*TP*TP*TP*AP*GP*CP*CP*CP*TP*TP*AP*TP*CP*CP*G)-3'), DNA (5'-D(P*CP*GP*GP*AP*TP*AP*AP*GP*GP*GP*CP*TP*GP*AP*GP*CP*AP*CP*GP*CP*CP*GP*A)-3'), DNA (5'-D(P*TP*CP*GP*GP*CP*GP*TP*GP*CP*TP*C)-3'), ...
Authors:Duckworth, A.T, Ducos, P.L, McMillan, S.D, Satyshur, K.A, Blumenthal, K.H, Deorio, H.R, Larson, J.A, Sandler, S.J, Grant, T, Keck, J.L.
Deposit date:2022-11-28
Release date:2023-05-10
Last modified:2023-05-24
Method:ELECTRON MICROSCOPY (3.22 Å)
Cite:Replication fork binding triggers structural changes in the PriA helicase that govern DNA replication restart in E. coli.
Nat Commun, 14, 2023
3IGM
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BU of 3igm by Molmil
A 2.2A crystal structure of the AP2 domain of PF14_0633 from P. falciparum, bound as a domain-swapped dimer to its cognate DNA
Descriptor: 5'-D(*TP*GP*CP*AP*TP*GP*CP*A)-3', PF14_0633 protein
Authors:Lindner, S.E, De Silva, E, Keck, J.L, Llinas, M.
Deposit date:2009-07-28
Release date:2009-11-10
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Determinants of DNA Binding by a P. falciparum ApiAP2 Transcriptional Regulator.
J.Mol.Biol., 395, 2010
3SXU
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BU of 3sxu by Molmil
Structure of the E. coli SSB-DNA polymerase III interface
Descriptor: DNA polymerase III subunit chi, DNA polymerase III subunit psi, SSB peptide
Authors:Marceau, A.H, Keck, J.L.
Deposit date:2011-07-15
Release date:2011-09-21
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure of the SSB-DNA polymerase III interface and its role in DNA replication.
Embo J., 30, 2011
3UFM
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BU of 3ufm by Molmil
Co-crystal structure of Deinococcus radiodurans uracil-DNA glycosylase and the C-terminus of the single-stranded DNA-binding protein
Descriptor: IODIDE ION, Single-stranded DNA-binding protein, Uracil-DNA glycosylase
Authors:George, N.P, Keck, J.L.
Deposit date:2011-11-01
Release date:2012-11-07
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Identification of the SSB-interaction platform of Deinococcus radiodurans uracil-DNA glycosylase
To be Published
3UDG
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BU of 3udg by Molmil
Structure of Deinococcus radiodurans SSB bound to ssDNA
Descriptor: 5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3', Single-stranded DNA-binding protein, THYMIDINE-5'-PHOSPHATE
Authors:George, N.P, Ngo, K.V, Chitteni-Patu, S, Norais, C.A, Battista, J.R, Cox, M.M, Keck, J.L.
Deposit date:2011-10-28
Release date:2012-05-16
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure and Cellular Dynamics of Deinococcus radiodurans Single-stranded DNA (ssDNA)-binding Protein (SSB)-DNA Complexes.
J.Biol.Chem., 287, 2012
3UF7
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BU of 3uf7 by Molmil
Co-crystal structure of Escherichia coli uracil-DNA glycosylase and a C-terminal fragement of the single-stranded DNA-binding protein
Descriptor: SULFATE ION, Single-stranded DNA-binding protein, Uracil-DNA glycosylase
Authors:George, N.P, Liban, T.J, Reyes-Lamothe, R, Keck, J.L.
Deposit date:2011-10-31
Release date:2012-11-07
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Identification of the SSB-interaction platform of Escherichia coli uracil-DNA glycosylase
To be Published
1WUD
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BU of 1wud by Molmil
E. coli RecQ HRDC domain
Descriptor: ATP-dependent DNA helicase recQ
Authors:Bernstein, D.A, Keck, J.L.
Deposit date:2004-12-04
Release date:2005-08-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Conferring Substrate Specificity to DNA Helicases: Role of the RecQ HRDC Domain
STRUCTURE, 13, 2005
3VDY
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BU of 3vdy by Molmil
B. subtilis SsbB/ssDNA
Descriptor: 5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3', Single-stranded DNA-binding protein ssbB
Authors:Yadav, T, Carrasco, B, Myers, A.R, George, N.P, Keck, J.L, Alonso, J.C.
Deposit date:2012-01-06
Release date:2012-03-14
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Genetic recombination in Bacillus subtilis: a division of labor between two single-strand DNA-binding proteins.
Nucleic Acids Res., 40, 2012

 

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