Author results

1AA9
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HUMAN C-HA-RAS(1-171)(DOT)GDP, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor:C-HA-RAS, MAGNESIUM ION, GUANOSINE-5'-DIPHOSPHATE
Authors:Ito, Y., Yamasaki, Y., Muto, Y., Kawai, G., Nishimura, S., Miyazawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:1997-01-27
Release date:1997-07-29
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Regional polysterism in the GTP-bound form of the human c-Ha-Ras protein.
Biochemistry, 36, 1997
1FNX
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SOLUTION STRUCTURE OF THE HUC RBD1-RBD2 COMPLEXED WITH THE AU-RICH ELEMENT
Descriptor:AU-RICH RNA ELEMENT, HU ANTIGEN C
Authors:Inoue, M., Hirao, M., Kasashima, K., Kim, I.-S., Kawai, G., Kigawa, T., Sakamoto, H., Muto, Y., Yokoyama, S.
Deposit date:2000-08-24
Release date:2003-06-24
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of mouse HuC RNA-binding domains complexed with an AU-Rich element reveals determinants of neuronal differentiation
To be Published, 2000
1IT1
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SOLUTION STRUCTURES OF FERROCYTOCHROME C3 FROM DESULFOVIBRIO VULGARIS MIYAZAKI F
Descriptor:cytochrome c3, HEME C
Authors:Harada, E., Fukuoka, Y., Ohmura, T., Fukunishi, A., Kawai, G., Fujiwara, T., Akutsu, H.
Deposit date:2001-12-29
Release date:2002-07-10
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Redox-coupled conformational alternations in cytochrome c(3) from D. vulgaris Miyazaki F on the basis of its reduced solution structure.
J.Mol.Biol., 319, 2002
1J1H
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SOLUTION STRUCTURE OF A TMRNA-BINDING PROTEIN, SMPB, FROM THERMUS THERMOPHILUS
Descriptor:Small Protein B
Authors:Someya, T., Nameki, N., Hosoi, H., Suzuki, S., Hatanaka, H., Fujii, M., Terada, T., Shirouzu, M., Inoue, Y., Shibata, T., Kuramitsu, S., Yokoyama, S., Kawai, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-12-04
Release date:2003-02-11
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus
FEBS Lett., 535, 2003
1K2G
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STRUCTURAL BASIS FOR THE 3'-TERMINAL GUANOSINE RECOGNITION BY THE GROUP I INTRON
Descriptor:5'-R(*CP*AP*GP*AP*CP*UP*UP*CP*GP*GP*UP*CP*GP*CP*AP*GP*AP*GP*AP*UP*GP*G)-3'
Authors:Kitamura, Y., Muto, Y., Watanabe, S., Kim, I., Ito, T., Nishiya, Y., Sakamoto, K., Ohtsuki, T., Kawai, G., Watanabe, K., Hosono, K., Takaku, H., Katoh, E., Yamazaki, T., Inoue, T., Yokoyama, S.
Deposit date:2001-09-27
Release date:2002-05-08
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of an RNA fragment with the P7/P9.0 region and the 3'-terminal guanosine of the tetrahymena group I intron.
RNA, 8, 2002
1L1W
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NMR STRUCTURE OF A SRP19 BINDING DOMAIN IN HUMAN SRP RNA
Descriptor:SRP19 binding domain of SRP RNA
Authors:Sakamoto, T., Morita, S., Tabata, K., Nakamura, K., Kawai, G.
Deposit date:2002-02-20
Release date:2002-05-22
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of a SRP19 binding domain in human SRP RNA.
J.Biochem.(Tokyo), 132, 2002
1WKS
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SOLUTION STRUCTURE OF AN RNA STEM-LOOP DERIVED FROM THE 3' CONSERVED REGION OF EEL LINE UNAL2
Descriptor:5'-R(*GP*GP*CP*UP*UP*UP*GP*GP*AP*UP*AP*AP*AP*AP*GP*CP*C)-3'
Authors:Baba, S., Kajikawa, M., Okada, N., Kawai, G.
Deposit date:2004-06-04
Release date:2004-06-22
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of an RNA stem-loop derived from the 3' conserved region of eel LINE UnaL2
Rna, 10, 2004
1XWP
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SOLUTION STRUCTURE OF AUCGCA LOOP
Descriptor:5'-R(*GP*GP*AP*GP*AP*UP*CP*GP*CP*AP*CP*UP*CP*CP*A)-3'
Authors:Sakamoto, T., Oguro, A., Kawai, G., Ohtsu, T., Nakamura, Y.
Deposit date:2004-11-02
Release date:2005-02-15
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structures of double loops of an RNA aptamer against mammalian initiation factor 4A
Nucleic Acids Res., 33, 2005
1XWU
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SOLUTION STRUCTURE OF ACAUAGA LOOP
Descriptor:5'-R(*CP*GP*AP*AP*AP*CP*AP*UP*AP*GP*AP*UP*UP*CP*GP*A)-3'
Authors:Sakamoto, T., Oguro, A., Kawai, G., Ohtsu, T., Nakamura, Y.
Deposit date:2004-11-02
Release date:2005-02-15
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structures of double loops of an RNA aptamer against mammalian initiation factor 4A
Nucleic Acids Res., 33, 2005
2CUW
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CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS PURS, ONE OF THE SUBUNITS OF FORMYLGLYCINAMIDE RIBONUCLEOTIDE AMIDOTRANSFERASE IN THE PURINE BIOSYNTHETIC PATHWAY
Descriptor:PurS
Authors:Yanai, H., Kanagawa, M., Sampei, G., Kawai, G., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-30
Release date:2005-11-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of Thermus thermophilus PurS, One of the Subunits of Formylglycinamide Ribonucleotide Amidotransferase in the Purine Biosynthetic Pathway
To be Published
2D17
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SOLUTION RNA STRUCTURE OF STEM-BULGE-STEM REGION OF THE HIV-1 DIMERIZATION INITIATION SITE
Descriptor:5'-R(*CP*GP*GP*CP*AP*AP*GP*AP*GP*GP*CP*GP*AP*CP*CP*C)-3', 5'-R(*GP*GP*GP*UP*CP*GP*GP*CP*UP*UP*GP*CP*UP*G)-3'
Authors:Baba, S., Takahashi, K., Noguchi, S., Takaku, H., Koyanagi, Y., Yamamoto, N., Kawai, G.
Deposit date:2005-08-15
Release date:2005-11-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.
J.Biochem.(Tokyo), 138, 2005
2D18
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SOLUTION RNA STRUCTURE OF LOOP REGION OF THE HIV-1 DIMERIZATION INITIATION SITE IN THE EXTENDED-DUPLEX DIMER
Descriptor:5'-R(*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*GP*GP*C)-3'
Authors:Baba, S., Takahashi, K., Noguchi, S., Takaku, H., Koyanagi, Y., Yamamoto, N., Kawai, G.
Deposit date:2005-08-15
Release date:2005-11-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.
J.Biochem.(Tokyo), 138, 2005
2D19
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SOLUTION RNA STRUCTURE OF LOOP REGION OF THE HIV-1 DIMERIZATION INITIATION SITE IN THE KISSING-LOOP DIMER
Descriptor:5'-R(*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*GP*GP*C)-3'
Authors:Baba, S., Takahashi, K., Noguchi, S., Takaku, H., Koyanagi, Y., Yamamoto, N., Kawai, G.
Deposit date:2005-08-15
Release date:2005-11-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.
J.Biochem.(Tokyo), 138, 2005
2D1A
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SOLUTION RNA STRUCTURE MODEL OF THE HIV-1 DIMERIZATION INITIATION SITE IN THE EXTENDED-DUPLEX DIMER
Descriptor:RNA
Authors:Baba, S., Takahashi, K., Noguchi, S., Takaku, H., Koyanagi, Y., Yamamoto, N., Kawai, G.
Deposit date:2005-08-15
Release date:2005-11-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.
J.Biochem.(Tokyo), 138, 2005
2D1B
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SOLUTION RNA STRUCTURE MODEL OF THE HIV-1 DIMERIZATION INITIATION SITE IN THE KISSING-LOOP DIMER
Descriptor:RNA
Authors:Baba, S., Takahashi, K., Noguchi, S., Takaku, H., Koyanagi, Y., Yamamoto, N., Kawai, G.
Deposit date:2005-08-15
Release date:2005-11-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.
J.Biochem.(Tokyo), 138, 2005
2DGB
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STRUCTURE OF THERMUS THERMOPHILUS PURS IN THE P21 FORM
Descriptor:hypothetical protein PurS
Authors:Yanai, H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-03-10
Release date:2006-09-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of Thermus thermophilus PurS, One of the Subunits of Formylglycinamide Ribonucleotide Amidotransferase in the Purine Biosynthetic Pathway
To be published
2F87
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SOLUTION STRUCTURE OF A GAAG TETRALOOP IN SRP RNA FROM PYROCOCCUS FURIOSUS
Descriptor:SRP RNA
Authors:Okada, K., Takahashi, M., Sakamoto, T., Nakamura, K., Kanai, A., Kawai, G
Deposit date:2005-12-02
Release date:2006-08-08
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of a GAAG tetraloop in helix 6 of SRP RNA from Pyrococcus furiosus
Nucleosides Nucleotides Nucleic Acids, 25, 2006
2FDT
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SOLUTION STRUCTURE OF A CONSERVED RNA HAIRPIN OF EEL LINE UNAL2
Descriptor:36-mer
Authors:Nomura, Y., Baba, S., Nakazato, S., Sakamoto, T., Kajikawa, M., Okada, N., Kawai, G.
Deposit date:2005-12-14
Release date:2006-12-05
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure and functional importance of a conserved RNA hairpin of eel LINE UnaL2
Nucleic Acids Res., 34, 2006
2FYH
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SOLUTION STRUCTURE OF THE 2'-5' RNA LIGASE-LIKE PROTEIN FROM PYROCOCCUS FURIOSUS
Descriptor:putative integral membrane transport protein
Authors:Okada, K., Matsuda, T., Sakamoto, T., Muto, Y., Yokoyama, S., Kanai, A., Kawai, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-02-08
Release date:2007-02-20
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Characterization of a heat-stable enzyme possessing GTP-dependent RNA ligase activity from a hyperthermophilic archaeon, Pyrococcus furiosus
Rna, 15, 2009
2IP4
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CRYSTAL STRUCTURE OF GLYCINAMIDE RIBONUCLEOTIDE SYNTHETASE FROM THERMUS THERMOPHILUS HB8
Descriptor:Phosphoribosylamine--glycine ligase, SULFATE ION
Authors:Sampei, G., Baba, S., Kanagawa, M., Yanai, H., Ishii, T., Kawai, H., Fukai, Y., Ebihara, A., Nakagawa, N., Kawai, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-10-11
Release date:2007-10-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structures of glycinamide ribonucleotide synthetase, PurD, from thermophilic eubacteria
J.Biochem., 148, 2010
2RRC
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SOLUTION STRUCTURE OF RNA APTAMER AGAINST AML1 RUNT DOMAIN
Descriptor:5'-R(P*GP*GP*AP*CP*CP*CP*(AP7)P*CP*CP*AP*CP*GP*GP*CP*GP*AP*GP*GP*UP*CP*CP*A)-3'
Authors:Nomura, Y., Fujiwara, K., Chiba, M., Fukunaga, J., Tanaka, Y., Iibuchi, H., Tanaka, T., Nakamura, Y., Kawai, G., Kozu, T., Sakamoto, T.
Deposit date:2010-06-23
Release date:2011-06-29
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:A novel high affinity RNA motif that mimics DNA in AML1 Runt domain binding
To be Published
2RVO
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SOLUTION STRUCTURE OF A REVERSE TRANSCRIPTASE RECOGNITION SITE OF A LINE RNA FROM ZEBRAFISH
Descriptor:RNA (34-MER)
Authors:Otsu, M., Norose, N., Arai, N., Terao, R., Kajikawa, M., Okada, N., Kawai, G.
Deposit date:2016-02-03
Release date:2017-02-08
Last modified:2017-11-15
Method:SOLUTION NMR
Cite:Solution structure of a reverse transcriptase recognition site of a LINE RNA from zebrafish.
J. Biochem., 162, 2017
2YRW
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CRYSTAL STRUCTURE OF GAR SYNTHETASE FROM GEOBACILLUS KAUSTOPHILUS
Descriptor:Phosphoribosylglycinamide synthetase, PHOSPHATE ION
Authors:Baba, S., Kanagawa, M., Kuramitsu, S., Yokoyama, S., Kawai, G., Sampei, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-03
Release date:2007-10-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures of glycinamide ribonucleotide synthetase, PurD, from thermophilic eubacteria
J.Biochem., 148, 2010
2YRX
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CRYSTAL STRUCTURE OF GAR SYNTHETASE FROM GEOBACILLUS KAUSTOPHILUS
Descriptor:Phosphoribosylglycinamide synthetase, PHOSPHATE ION, ADENOSINE MONOPHOSPHATE
Authors:Baba, S., Kanagawa, M., Kuramitsu, S., Yokoyama, S., Kawai, G., Sampei, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-03
Release date:2007-10-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of glycinamide ribonucleotide synthetase, PurD, from thermophilic eubacteria
J.Biochem., 148, 2010
2YS6
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CRYSTAL STRUCTURE OF GAR SYNTHETASE FROM GEOBACILLUS KAUSTOPHILUS
Descriptor:Phosphoribosylglycinamide synthetase, GLYCINE, ADENOSINE MONOPHOSPHATE
Authors:Baba, S., Kanagawa, M., Kuramitsu, S., Yokoyama, S., Kawai, G., Sampei, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-03
Release date:2007-10-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Crystal structures of glycinamide ribonucleotide synthetase, PurD, from thermophilic eubacteria
J.Biochem., 148, 2010
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