Author results

1IQT
  • Download 1iqt
  • View 1iqt
Molmil generated image of 1iqt
SOLUTION STRUCTURE OF THE C-TERMINAL RNA-BINDING DOMAIN OF HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN D0 (AUF1)
Descriptor:heterogeneous nuclear ribonucleoprotein D0
Authors:Katahira, M., Miyanoiri, Y., Enokizono, Y., Matsuda, G., Nagata, T., Ishikawa, F., Uesugi, S.
Deposit date:2001-08-01
Release date:2002-08-07
Last modified:2018-06-27
Method:SOLUTION NMR
Cite:Structure of the C-terminal RNA-binding domain of hnRNP D0 (AUF1), its interactions with RNA and DNA, and change in backbone dynamics upon complex formation with DNA.
J.Mol.Biol., 311, 2001
2RQJ
  • Download 2rqj
  • View 2rqj
Molmil generated image of 2rqj
QUADRUPLEX STRUCTURE OF AN RNA APTAMER AGAINST BOVINE PRION PROTEIN
Descriptor:RNA (5'-R(*GP*GP*AP*GP*GP*AP*GP*GP*AP*GP*GP*A)-3')
Authors:Katahira, M., Mashima, T., Matsugami, A., Nishikawa, F., Nishikawa, S.
Deposit date:2009-07-18
Release date:2009-11-17
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Unique quadruplex structure and interaction of an RNA aptamer against bovine prion protein
Nucleic Acids Res., 37, 2009
1CP8
  • Download 1cp8
  • View 1cp8
Molmil generated image of 1cp8
NMR STRUCTURE OF DNA (5'-D(TTGGCCAA)2-3') COMPLEXED WITH NOVEL ANTITUMOR DRUG UCH9
Descriptor:DNA (5'-D(P*TP*TP*GP*GP*CP*CP*AP*A)-3'), 2,6-DIDEOXY-BETA-D-GLUCOSE, 2,6-DIDEOXY-BETA-D-GALACTOSE, ...
Authors:Katahira, R., Katahira, M., Yamashita, Y., Ogawa, H., Kyogoku, Y., Yoshida, M.
Deposit date:1999-06-11
Release date:1999-07-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the novel antitumor drug UCH9 complexed with d(TTGGCCAA)2 as determined by NMR.
Nucleic Acids Res., 26, 1998
1X0F
  • Download 1x0f
  • View 1x0f
Molmil generated image of 1x0f
COMPLEX STRUCTURE OF THE C-TERMINAL RNA-BINDING DOMAIN OF HNRNP D(AUF1) WITH TELOMERIC DNA
Descriptor:5'-D(P*TP*AP*GP*G)-3', Heterogeneous nuclear ribonucleoprotein D0
Authors:Enokizono, Y., Konishi, Y., Nagata, K., Ouhashi, K., Uesugi, S., Ishikawa, F., Katahira, M.
Deposit date:2005-03-22
Release date:2005-04-05
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of hnRNP D complexed with single-stranded telomere DNA and unfolding of the quadruplex by heterogeneous nuclear ribonucleoprotein D.
J.Biol.Chem., 280, 2005
1UAW
  • Download 1uaw
  • View 1uaw
Molmil generated image of 1uaw
SOLUTION STRUCTURE OF THE N-TERMINAL RNA-BINDING DOMAIN OF MOUSE MUSASHI1
Descriptor:mouse-musashi-1
Authors:Miyanoiri, Y., Kobayashi, H., Watanabe, M., Ikeda, T., Nagata, T., Okano, H., Uesugi, S., Katahira, M.
Deposit date:2003-03-24
Release date:2004-03-24
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Origin of higher affinity to RNA of the N-terminal RNA-binding domain than that of the C-terminal one of a mouse neural protein, musashi1, as revealed by comparison of their structures, modes of interaction, surface electrostatic potentials, and backbone dynamics
J.Biol.Chem., 278, 2003
1OZ8
  • Download 1oz8
  • View 1oz8
Molmil generated image of 1oz8
INTRAMOLECULAR HIGHER-ORDER PACKING OF PARALLEL QUADRUPLEXES COMPRISING A G:G:G:G TETRAD AND A G(:A):G(:A):G(:A):G HEPTAD OF GGA TRIPLET REPEAT DNA
Descriptor:5'-D(*GP*GP*AP*GP*GP*AP*GP*GP*AP*GP*GP*AP*GP*GP*AP*GP*GP*AP*GP*GP*AP*GP*GP*A)-3'
Authors:Matsugami, A., Okuizumi, T., Uesugi, S., Katahira, M.
Deposit date:2003-04-08
Release date:2004-04-08
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Intramolecular Higher Order Packing of Parallel Quadruplexes Comprising a G:G:G:G Tetrad and a G(:A):G(:A):G(:A):G Heptad of GGA Triplet Repeat DNA
J.BIOL.CHEM., 278, 2003
1WTB
  • Download 1wtb
  • View 1wtb
Molmil generated image of 1wtb
COMPLEX STRUCTURE OF THE C-TERMINAL RNA-BINDING DOMAIN OF HNRNP D (AUF1) WITH TELOMERE DNA
Descriptor:5'-D(P*TP*AP*GP*G)-3', Heterogeneous nuclear ribonucleoprotein D0
Authors:Enokizono, Y., Konishi, Y., Nagata, K., Ouhashi, K., Uesugi, S., Ishikawa, F., Katahira, M.
Deposit date:2004-11-22
Release date:2005-04-05
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of hnRNP D complexed with single-stranded telomere DNA and unfolding of the quadruplex by heterogeneous nuclear ribonucleoprotein D
J.Biol.Chem., 280, 2005
1HRA
  • Download 1hra
  • View 1hra
Molmil generated image of 1hra
THE SOLUTION STRUCTURE OF THE HUMAN RETINOIC ACID RECEPTOR-BETA DNA-BINDING DOMAIN
Descriptor:RETINOIC ACID RECEPTOR, ZINC ION
Authors:Knegtel, R.M.A., Katahira, M., Schilthuis, J.G., Bonvin, A.M.J.J., Boelens, R., Eib, D., Van Der Saag, P.T., Kaptein, R.
Deposit date:1993-07-25
Release date:1994-01-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The solution structure of the human retinoic acid receptor-beta DNA-binding domain.
J.Biomol.NMR, 3, 1993
2MSS
  • Download 2mss
  • View 2mss
Molmil generated image of 2mss
MUSASHI1 RBD2, NMR
Descriptor:PROTEIN (MUSASHI1)
Authors:Nagata, T., Kanno, R., Kurihara, Y., Uesugi, S., Imai, T., Sakakibara, S., Okano, H., Katahira, M.
Deposit date:1999-05-19
Release date:2000-05-19
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure, backbone dynamics and interactions with RNA of the C-terminal RNA-binding domain of a mouse neural RNA-binding protein, Musashi1.
J.Mol.Biol., 287, 1999
2MST
  • Download 2mst
  • View 2mst
Molmil generated image of 2mst
MUSASHI1 RBD2, NMR
Descriptor:PROTEIN (MUSASHI1)
Authors:Nagata, T., Kanno, R., Kurihara, Y., Uesugi, S., Imai, T., Sakakibara, S., Okano, H., Katahira, M.
Deposit date:1999-05-19
Release date:2000-05-19
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure, backbone dynamics and interactions with RNA of the C-terminal RNA-binding domain of a mouse neural RNA-binding protein, Musashi1.
J.Mol.Biol., 287, 1999
1MYQ
  • Download 1myq
  • View 1myq
Molmil generated image of 1myq
AN INTRAMOLECULAR QUADRUPLEX OF (GGA)(4) TRIPLET REPEAT DNA WITH A G:G:G:G TETRAD AND A G(:A):G(:A):G(:A):G HEPTAD, AND ITS DIMERIC INTERACTION
Descriptor:5'-D(*GP*GP*AP*GP*GP*AP*GP*GP*AP*GP*GP*A)-3'
Authors:Matsugami, A., Ouhashi, K., Kanagawa, M., Liu, H., Kanagawa, S., Uesugi, S., Katahira, M.
Deposit date:2002-10-04
Release date:2002-10-23
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:An intramolecular quadruplex of (GGA)(4) triplet repeat DNA with a G:G:G:G tetrad and a G(:A):G(:A):G(:A):G heptad, and its dimeric interaction.
J.Mol.Biol., 313, 2001
2RMQ
  • Download 2rmq
  • View 2rmq
Molmil generated image of 2rmq
SOLUTION STRUCTURE OF FULLY MODIFIED 4'-THIODNA WITH THE SEQUENCE OF D(CGCGAATTCGCG)
Descriptor:DNA (5'-D(*(C4S)P*(S4G)P*(C4S)P*(S4G)P*(S4A)P*(S4A)P*(T49)P*(T49)P*(C4S)P*(S4G)P*(C4S)P*(S4G))-3')
Authors:Matsugami, A., Ohyama, T., Inada, M., Katahira, M.
Deposit date:2007-11-12
Release date:2008-04-15
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Unexpected A-form formation of 4'-thioDNA in solution, revealed by NMR, and the implications as to the mechanism of nuclease resistance
Nucleic Acids Res., 36, 2008
2RSK
  • Download 2rsk
  • View 2rsk
Molmil generated image of 2rsk
RNA APTAMER AGAINST PRION PROTEIN IN COMPLEX WITH THE PARTIAL BINDING PEPTIDE
Descriptor:RNA (5'-R(*GP*GP*AP*GP*GP*AP*GP*GP*AP*GP*GP*A)-3'), partial binding peptide of Major prion protein
Authors:Mashima, T., Nishikawa, F., Kamatari, Y.O., Fujiwara, H., Nishikawa, S., Kuwata, K., Katahira, M.
Deposit date:2012-03-08
Release date:2013-02-13
Method:SOLUTION NMR
Cite:Anti-prion activity of an RNA aptamer and its structural basis
Nucleic Acids Res., 41, 2013
2RU7
  • Download 2ru7
  • View 2ru7
Molmil generated image of 2ru7
REFINED STRUCTURE OF RNA APTAMER IN COMPLEX WITH THE PARTIAL BINDING PEPTIDE OF PRION PROTEIN
Descriptor:RNA_(5'-R(*GP*GP*AP*GP*GP*AP*GP*GP*AP*GP*GP*A)-3'), P16 peptide from Major prion protein
Authors:Hayashi, T., Oshima, H., Mashima, T., Nagata, T., Katahira, M., Kinoshita, M.
Deposit date:2013-12-24
Release date:2014-05-21
Method:SOLUTION NMR
Cite:Binding of an RNA aptamer and a partial peptide of a prion protein: crucial importance of water entropy in molecular recognition
Nucleic Acids Res., 2014
1HD0
  • Download 1hd0
  • View 1hd0
Molmil generated image of 1hd0
HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN D0 (HNRNP D0 RBD1), NMR
Descriptor:PROTEIN (HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN D0)
Authors:Nagata, T., Kurihara, Y., Matsuda, G., Saeki, J., Kohno, T., Yanagida, Y., Ishikawa, F., Uesugi, S., Katahira, M.
Deposit date:1999-05-18
Release date:2000-05-18
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure and interactions with RNA of the N-terminal UUAG-specific RNA-binding domain of hnRNP D0.
J.Mol.Biol., 287, 1999
1HD1
  • Download 1hd1
  • View 1hd1
Molmil generated image of 1hd1
HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN D0 (HNRNP D0 RBD1), NMR
Descriptor:PROTEIN (HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN D0)
Authors:Nagata, T., Kurihara, Y., Matsuda, G., Saeki, J., Kohno, T., Yanagida, Y., Ishikawa, F., Uesugi, S., Katahira, M.
Deposit date:1999-05-18
Release date:2000-05-18
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure and interactions with RNA of the N-terminal UUAG-specific RNA-binding domain of hnRNP D0.
J.Mol.Biol., 287, 1999
1MY9
  • Download 1my9
  • View 1my9
Molmil generated image of 1my9
SOLUTION STRUCTURE OF A K+ CATION STABILIZED DIMERIC RNA QUADRUPLEX CONTAINING TWO G:G(:A):G:G(:A) HEXADS, G:G:G:G TETRADS AND UUUU LOOPS
Descriptor:5'-R(*GP*GP*AP*GP*GP*UP*UP*UP*UP*GP*GP*AP*GP*G)-3'
Authors:Liu, H., Matsugami, A., Katahira, M., Uesugi, S.
Deposit date:2002-10-04
Release date:2003-10-07
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:A Dimeric RNA Quadruplex Architecture Comprised of Two G:G(:A):G:G(:A) Hexads, G:G:G:G Tetrads and UUUU Loops
J.Mol.Biol., 322, 2002
1NBK
  • Download 1nbk
  • View 1nbk
Molmil generated image of 1nbk
THE STRUCTURE OF RNA APTAMER FOR HIV TAT COMPLEXED WITH TWO ARGININAMIDE MOLECULES
Descriptor:RNA aptamer, 2-AMINO-5-GUANIDINO-PENTANOIC ACID
Authors:Matsugami, A., Kobayashi, S., Ouhashi, K., Uesugi, S., Yamamoto, R., Taira, K., Nishikawa, S., Kumar, P.K.R., Katahira, M.
Deposit date:2002-12-03
Release date:2003-12-03
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural Basis of the Highly Efficient Trapping of the HIV Tat Protein by an RNA Aptamer
Structure, 11, 2003
2E4I
  • Download 2e4i
  • View 2e4i
Molmil generated image of 2e4i
HUMAN TELOMERIC DNA MIXED-PARALLEL/ANTIPARALLEL QUADRUPLEX UNDER PHYSIOLOGICAL IONIC CONDITIONS STABILIZED BY PROPER INCORPORATION OF 8-BROMOGUANOSINES
Descriptor:DNA (5'-D(*DAP*(BGM)P*DGP*DGP*DTP*DTP*DAP*(BGM)P*DGP*DGP*DTP*DTP*DAP*(BGM)P*(BGM)P*DGP*DTP*DTP*DAP*(BGM)P*DGP*DG)-3')
Authors:Matsugami, A., Xu, Y., Noguchi, Y., Sugiyama, H., Katahira, M.
Deposit date:2006-12-11
Release date:2007-12-11
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of a human telomeric DNA sequence stabilized by 8-bromoguanosine substitutions, as determined by NMR in a K+ solution
Febs J., 274, 2007
2EBI
  • Download 2ebi
  • View 2ebi
Molmil generated image of 2ebi
ARABIDOPSIS GT-1 DNA-BINDING DOMAIN WITH T133D PHOSPHOMIMETIC MUTATION
Descriptor:DNA binding protein GT-1
Authors:Nagata, T., Noto, K., Niyada, E., Ikeda, Y., Yamamoto, Y., Uesugi, S., Murata, J., Hiratsuka, K., Katahira, M.
Deposit date:2007-02-08
Release date:2008-02-19
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structures of the trihelix DNA-binding domains of the wild-type and a phosphomimetic mutant of Arabidopsis GT-1: mechanism for an increase in DNA-binding affinity through phosphorylation.
Proteins, 78, 2010
2JMW
  • Download 2jmw
  • View 2jmw
Molmil generated image of 2jmw
STRUCTURE OF DNA-BINDING DOMAIN OF ARABIDOPSIS GT-1
Descriptor:DNA binding protein GT-1
Authors:Nagata, T., Niyada, E., Noto, K., Ikeda, Y., Yamamoto, Y., Uesugi, S., Murata, J., Hiratsuka, K., Katahira, M.
Deposit date:2006-12-11
Release date:2007-12-11
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structures of the trihelix DNA-binding domains of the wild-type and a phosphomimetic mutant of Arabidopsis GT-1: mechanism for an increase in DNA-binding affinity through phosphorylation.
Proteins, 78, 2010
2KBO
  • Download 2kbo
  • View 2kbo
Molmil generated image of 2kbo
STRUCTURE, INTERACTION, AND REAL-TIME MONITORING OF THE ENZYMATIC REACTION OF WILD TYPE APOBEC3G
Descriptor:DNA dC->dU-editing enzyme APOBEC-3G, ZINC ION
Authors:Furukawa, A., Nagata, T., Matsugami, A., Habu, Y., Sugiyama, R., Hayashi, F., Kobayashi, N., Yokoyama, S., Takaku, H., Katahira, M.
Deposit date:2008-12-04
Release date:2009-02-03
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure, interaction and real-time monitoring of the enzymatic reaction of wild-type APOBEC3G
Embo J., 28, 2009
2RS2
  • Download 2rs2
  • View 2rs2
Molmil generated image of 2rs2
1H, 13C, AND 15N CHEMICAL SHIFT ASSIGNMENTS FOR MUSASHI1 RBD1:R(GUAGU) COMPLEX
Descriptor:RNA-binding protein Musashi homolog 1, RNA (5'-R(*GP*UP*AP*GP*U)-3')
Authors:Ohyama, T., Nagata, T., Tsuda, K., Imai, T., Okano, H., Yamazaki, T., Katahira, M.
Deposit date:2011-06-27
Release date:2011-12-28
Method:SOLUTION NMR
Cite:Structure of Musashi1 in a complex with target RNA: the role of aromatic stacking interactions
Nucleic Acids Res., 2011
2RUH
  • Download 2ruh
  • View 2ruh
Molmil generated image of 2ruh
CHEMICAL SHIFT ASSIGNMENTS FOR MIP AND MDM2 IN BOUND STATE
Descriptor:E3 ubiquitin-protein ligase Mdm2
Authors:Nagata, T., Shirakawa, K., Kobayashi, N., Shiheido, H., Horisawa, K., Katahira, M., Doi, N., Yanagawa, H.
Deposit date:2014-06-03
Release date:2014-10-15
Method:SOLUTION NMR
Cite:Structural Basis for Inhibition of the MDM2:p53 Interaction by an Optimized MDM2-Binding Peptide Selected with mRNA Display
Plos One, 9, 2014
5X3Y
  • Download 5x3y
  • View 5x3y
Molmil generated image of 5x3y
REFINED SOLUTION STRUCTURE OF MUSASHI1 RBD2
Descriptor:RNA-binding protein Musashi homolog 1
Authors:Iwaoka, R., Nagata, T., Tsuda, K., Imai, T., Okano, H., Kobayashi, N., Katahira, M.
Deposit date:2017-02-09
Release date:2017-12-13
Method:SOLUTION NMR
Cite:Structural Insight into the Recognition of r(UAG) by Musashi-1 RBD2, and Construction of a Model of Musashi-1 RBD1-2 Bound to the Minimum Target RNA
Molecules, 22, 2017
<12>