Author results

2BBM
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SOLUTION STRUCTURE OF A CALMODULIN-TARGET PEPTIDE COMPLEX BY MULTIDIMENSIONAL NMR
Descriptor:CALMODULIN, MYOSIN LIGHT CHAIN KINASE, CALCIUM ION
Authors:Clore, G.M., Bax, A., Ikura, M., Gronenborn, A.M.
Deposit date:1992-07-16
Release date:1994-01-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of a calmodulin-target peptide complex by multidimensional NMR.
Science, 256, 1992
2BBN
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SOLUTION STRUCTURE OF A CALMODULIN-TARGET PEPTIDE COMPLEX BY MULTIDIMENSIONAL NMR
Descriptor:CALMODULIN, MYOSIN LIGHT CHAIN KINASE, CALCIUM ION
Authors:Clore, G.M., Bax, A., Ikura, M., Gronenborn, A.M.
Deposit date:1992-07-16
Release date:1994-01-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of a calmodulin-target peptide complex by multidimensional NMR.
Science, 256, 1992
3UJ0
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CRYSTAL STRUCTURE OF THE INOSITOL 1,4,5-TRISPHOSPHATE RECEPTOR WITH LIGAND BOUND FORM.
Descriptor:Inositol 1,4,5-trisphosphate receptor type 1, D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE
Authors:Ikura, M., Seo, M.D., Ishiyama, N., Stathopulos, P.
Deposit date:2011-11-07
Release date:2012-02-15
Last modified:2013-01-09
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Structural and functional conservation of key domains in InsP3 and ryanodine receptors.
Nature, 483, 2012
3UJ4
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CRYSTAL STRUCTURE OF THE APO-INOSITOL 1,4,5-TRISPHOSPHATE RECEPTOR
Descriptor:Inositol 1,4,5-trisphosphate receptor type 1, SULFATE ION
Authors:Ikura, M., Seo, M.D., Ishiyama, N., Stathopulos, P.
Deposit date:2011-11-07
Release date:2012-02-15
Last modified:2013-01-09
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural and functional conservation of key domains in InsP3 and ryanodine receptors.
Nature, 483, 2012
1PRR
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NMR-DERIVED THREE-DIMENSIONAL SOLUTION STRUCTURE OF PROTEIN S COMPLEXED WITH CALCIUM
Descriptor:DEVELOPMENT-SPECIFIC PROTEIN S, CALCIUM ION
Authors:Bagby, S., Harvey, T.S., Eagle, S.G., Inouye, S., Ikura, M.
Deposit date:1994-03-25
Release date:1994-08-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR-derived three-dimensional solution structure of protein S complexed with calcium.
Structure, 2, 1994
1PRS
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NMR-DERIVED THREE-DIMENSIONAL SOLUTION STRUCTURE OF PROTEIN S COMPLEXED WITH CALCIUM
Descriptor:DEVELOPMENT-SPECIFIC PROTEIN S, CALCIUM ION
Authors:Bagby, S., Harvey, T.S., Eagle, S.G., Inouye, S., Ikura, M.
Deposit date:1994-03-25
Release date:1994-08-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR-derived three-dimensional solution structure of protein S complexed with calcium.
Structure, 2, 1994
1IQ5
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CALMODULIN/NEMATODE CA2+/CALMODULIN DEPENDENT KINASE KINASE FRAGMENT
Descriptor:CALMODULIN, CA2+/CALMODULIN DEPENDENT KINASE KINASE, CALCIUM ION
Authors:Kurokawa, H., Osawa, M., Kurihara, H., Katayama, N., Tokumitsu, H., Swindells, M.B., Kainosho, M., Ikura, M.
Deposit date:2001-06-14
Release date:2001-09-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Target-induced conformational adaptation of calmodulin revealed by the crystal structure of a complex with nematode Ca(2+)/calmodulin-dependent kinase kinase peptide
J.Mol.Biol., 312, 2001
1SUH
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AMINO-TERMINAL DOMAIN OF EPITHELIAL CADHERIN IN THE CALCIUM BOUND STATE, NMR, 20 STRUCTURES
Descriptor:EPITHELIAL CADHERIN
Authors:Overduin, M., Tong, K.I., Kay, C.M., Ikura, M.
Deposit date:1996-01-30
Release date:1996-07-11
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:1H, 15N and 13C resonance assignments and monomeric structure of the amino-terminal extracellular domain of epithelial cadherin.
J.Biomol.NMR, 7, 1996
1TFB
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NMR STUDIES OF HUMAN GENERAL TRANSCRIPTION FACTOR TFIIB: DYNAMICS AND INTERACTION WITH VP16 ACTIVATION DOMAIN, 20 STRUCTURES
Descriptor:TFIIB
Authors:Bagby, S., Ikura, M.
Deposit date:1996-11-14
Release date:1997-03-12
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Human general transcription factor TFIIB: conformational variability and interaction with VP16 activation domain.
Biochemistry, 37, 1998
1BXD
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NMR STRUCTURE OF THE HISTIDINE KINASE DOMAIN OF THE E. COLI OSMOSENSOR ENVZ
Descriptor:PROTEIN (OSMOLARITY SENSOR PROTEIN (ENVZ)), PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Tanaka, T., Saha, S.K., Tomomori, C., Ishima, R., Liu, D., Tong, K.I., Park, H., Dutta, R., Qin, L., Swindells, M.B., Yamazaki, T., Ono, A.M., Kainosho, M., Inouye, M., Ikura, M.
Deposit date:1998-10-02
Release date:1999-10-02
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure of the histidine kinase domain of the E. coli osmosensor EnvZ.
Nature, 396, 1998
1CKK
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CALMODULIN/RAT CA2+/CALMODULIN DEPENDENT PROTEIN KINASE FRAGMENT
Descriptor:Calmodulin-1, Calcium/calmodulin-dependent protein kinase kinase 1, CALCIUM ION
Authors:Osawa, M., Tokumitsu, H., Swindells, M.B., Kurihara, H., Orita, M., Shibanuma, T., Furuya, T., Ikura, M.
Deposit date:1998-11-20
Release date:1999-09-10
Last modified:2018-06-27
Method:SOLUTION NMR
Cite:A novel target recognition revealed by calmodulin in complex with Ca2+-calmodulin-dependent kinase kinase.
Nat.Struct.Biol., 6, 1999
4B0A
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THE HIGH-RESOLUTION STRUCTURE OF YTBP-YTAF1 IDENTIFIES CONSERVED AND COMPETING INTERACTION SURFACES IN TRANSCRIPTIONAL ACTIVATION
Descriptor:TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 1, LINKER, TATA-BOX-BINDING PROTEIN, ...
Authors:Anandapadamanaban, M., Andresen, C., Siponen, M., Kokubo, T., Ikura, M., Moche, M., Sunnerhagen, M.
Deposit date:2012-06-29
Release date:2013-07-03
Last modified:2013-08-21
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:High-Resolution Structure of TBP with Taf1 Reveals Anchoring Patterns in Transcriptional Regulation
Nat.Struct.Mol.Biol., 20, 2013
5WI4
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CRYSTAL STRUCTURE OF DYNLT1/TCTEX-1 IN COMPLEX WITH ARHGEF2
Descriptor:Dynein light chain Tctex-type 1,Rho guanine nucleotide exchange factor 2, SULFATE ION
Authors:Balan, M., Ishiyama, N., Marshall, C.B., Ikura, M.
Deposit date:2017-07-18
Release date:2017-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:MARK3-mediated phosphorylation of ARHGEF2 couples microtubules to the actin cytoskeleton to establish cell polarity.
Sci Signal, 10, 2017
1DMO
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CALMODULIN, NMR, 30 STRUCTURES
Descriptor:CALMODULIN
Authors:Zhang, M., Tanaka, T., Ikura, M.
Deposit date:1996-04-24
Release date:1996-08-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Calcium-induced conformational transition revealed by the solution structure of apo calmodulin.
Nat.Struct.Biol., 2, 1995
1EDH
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E-CADHERIN DOMAINS 1 AND 2 IN COMPLEX WITH CALCIUM
Descriptor:E-CADHERIN, MERCURY (II) ION, CALCIUM ION
Authors:Nagar, B., Overduin, M., Ikura, M., Rini, J.M.
Deposit date:1996-05-15
Release date:1997-01-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of calcium-induced E-cadherin rigidification and dimerization.
Nature, 380, 1996
1JOY
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SOLUTION STRUCTURE OF THE HOMODIMERIC DOMAIN OF ENVZ FROM ESCHERICHIA COLI BY MULTI-DIMENSIONAL NMR.
Descriptor:PROTEIN (ENVZ_ECOLI)
Authors:Tomomori, C., Tanaka, T., Dutta, R., Park, H., Saha, S.K., Zhu, Y., Ishima, R., Liu, D., Tong, K.I., Kurokawa, H., Qian, H., Inouye, M., Ikura, M.
Deposit date:1998-12-28
Release date:2000-01-12
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the homodimeric core domain of Escherichia coli histidine kinase EnvZ.
Nat.Struct.Biol., 6, 1999
1MUX
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SOLUTION NMR STRUCTURE OF CALMODULIN/W-7 COMPLEX: THE BASIS OF DIVERSITY IN MOLECULAR RECOGNITION, 30 STRUCTURES
Descriptor:CALMODULIN, CALCIUM ION, N-(6-AMINOHEXYL)-5-CHLORO-1-NAPHTHALENESULFONAMIDE
Authors:Osawa, M., Swindells, M.B., Tanikawa, J., Tanaka, T., Mase, T., Furuya, T., Ikura, M.
Deposit date:1997-09-06
Release date:1998-10-14
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of calmodulin-W-7 complex: the basis of diversity in molecular recognition.
J.Mol.Biol., 276, 1998
1N4K
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CRYSTAL STRUCTURE OF THE INOSITOL 1,4,5-TRISPHOSPHATE RECEPTOR BINDING CORE IN COMPLEX WITH IP3
Descriptor:Inositol 1,4,5-trisphosphate receptor type 1, D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE
Authors:Bosanac, I., Alattia, J.R., Mal, T.K., Chan, J., Talarico, S., Tong, F.K., Tong, K.I., Yoshikawa, F., Furuichi, T., Iwai, M., Michikawa, T., Mikoshiba, K., Ikura, M.
Deposit date:2002-10-31
Release date:2002-12-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of the inositol 1,4,5-trisphosphate receptor binding core in complex with its ligand.
Nature, 420, 2002
1RLY
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RDC-DERIVED MODELS OF THE ZINC RIBBON DOMAIN OF HUMAN GENERAL TRANSCRIPTION TFIIB (ZINC BOUND STRUCTURES)
Descriptor:Transcription initiation factor IIB, ZINC ION
Authors:Ghosh, M., Ikura, M.
Deposit date:2003-11-26
Release date:2004-05-25
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Probing Zn2+-binding effects on the zinc-ribbon domain of human general transcription factor TFIIB.
Biochem.J., 378, 2004
1RO4
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RDC-DERIVED MODELS OF THE ZINC RIBBON DOMAIN OF HUMAN GENERAL TRANSCRIPTION FACTOR TFIIB (ZINC FREE STRUCTURES)
Descriptor:Transcription initiation factor IIB
Authors:Ghosh, M., Ikura, M.
Deposit date:2003-12-01
Release date:2004-05-25
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Probing Zn2+-binding effects on the zinc-ribbon domain of human general transcription factor TFIIB.
Biochem.J., 378, 2004
2GW3
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CRYSTAL STRUCTURE OF STONY CORAL FLUORESCENT PROTEIN KAEDE, GREEN FORM
Descriptor:Kaede, NICKEL (II) ION
Authors:Hayashi, I., Mizuno, H., Miyawaki, A., Ikura, M.
Deposit date:2006-05-03
Release date:2007-05-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystallographic evidence for water-assisted photo-induced peptide cleavage in the stony coral fluorescent protein Kaede.
J.Mol.Biol., 372, 2007
2GW4
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CRYSTAL STRUCTURE OF STONY CORAL FLUORESCENT PROTEIN KAEDE, RED FORM
Descriptor:Kaede, NICKEL (II) ION
Authors:Hayashi, I., Mizuno, H., Miyawako, A., Ikura, M.
Deposit date:2006-05-03
Release date:2007-05-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystallographic evidence for water-assisted photo-induced peptide cleavage in the stony coral fluorescent protein Kaede.
J.Mol.Biol., 372, 2007
2K29
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STRUCTURE OF THE DBD DOMAIN OF E. COLI ANTITOXIN RELB
Descriptor:Antitoxin RelB
Authors:Li, G., Zhang, Y., Inouye, M., Ikura, M.
Deposit date:2008-03-28
Release date:2008-04-22
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural mechanism of transcriptional autorepression of the Escherichia coli RelB/RelE antitoxin/toxin module.
J.Mol.Biol., 380, 2008
2KC8
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STRUCTURE OF E. COLI TOXIN RELE (R81A/R83A) MUTANT IN COMPLEX WITH ANTITOXIN RELBC (K47-L79) PEPTIDE
Descriptor:Toxin relE, Antitoxin RelB
Authors:Li, G., Zhang, Y., Inouye, M., Ikura, M.
Deposit date:2008-12-17
Release date:2009-03-17
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Inhibitory mechanism of Escherichia coli RelE-RelB toxin-antitoxin module involves a helix displacement near an mRNA interferase active site.
J.Biol.Chem., 284, 2009
2KC9
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STRUCTURE OF E. COLI TOXIN RELE (R81A/R83A) MUTANT IN THE FREE STATE
Descriptor:Toxin relE
Authors:Li, G., Zhang, Y., Inouye, M., Ikura, M.
Deposit date:2008-12-17
Release date:2009-03-17
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Inhibitory mechanism of Escherichia coli RelE-RelB toxin-antitoxin module involves a helix displacement near an mRNA interferase active site.
J.Biol.Chem., 284, 2009