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4U2W
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BU of 4u2w by Molmil
Atomic resolution crystal structure of HV-BBI protease inhibitor from amphibian skin in complex with bovine trypsin
Descriptor: 1,2-ETHANEDIOL, Bowman-Birk trypsin inhibitor, CALCIUM ION, ...
Authors:Grudnik, P, Golik, P, Malicki, S, Debowski, D, Legowska, A, Rolka, K, Dubin, G.
Deposit date:2014-07-18
Release date:2015-01-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1 Å)
Cite:Atomic resolution crystal structure of HV-BBI protease inhibitor from amphibian skin in complex with bovine trypsin.
Proteins, 83, 2015
5O0I
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BU of 5o0i by Molmil
ADP-dependent glucokinase from Pyrococcus horikoshii
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, ADP-dependent glucokinase, ...
Authors:Grudnik, P, Dubin, G.
Deposit date:2017-05-16
Release date:2018-05-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for ADP-dependent glucokinase inhibition by 8-bromo-substituted adenosine nucleotide.
J. Biol. Chem., 293, 2018
5O0J
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BU of 5o0j by Molmil
ADP-dependent glucokinase from Pyrococcus horikoshii
Descriptor: 8-BROMO-ADENOSINE-5'-MONOPHOSPHATE, ADP-dependent glucokinase, alpha-D-glucopyranose
Authors:Grudnik, P, Dubin, G.
Deposit date:2017-05-16
Release date:2018-05-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Structural basis for ADP-dependent glucokinase inhibition by 8-bromo-substituted adenosine nucleotide.
J. Biol. Chem., 293, 2018
4GR6
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BU of 4gr6 by Molmil
Crystal structure of AtRbcX2 from Arabidopsis thaliana
Descriptor: 1,2-ETHANEDIOL, AtRbcX2
Authors:Grudnik, P, Golik, P, Kolesinski, P, Dubin, G, Szczepaniak, A.
Deposit date:2012-08-24
Release date:2013-01-30
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Insights into eukaryotic Rubisco assembly - Crystal structures of RbcX chaperones from Arabidopsis thaliana.
Biochim.Biophys.Acta, 1830, 2013
6EHA
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BU of 6eha by Molmil
Heme oxygenase 1 in complex with inhibitor
Descriptor: 1-(3-imidazol-1-ylpropyl)-5-(2-methylpropyl)-4-phenyl-imidazole, Heme oxygenase 1, PROTOPORPHYRIN IX CONTAINING FE
Authors:Grudnik, P, Mieczkowski, M.
Deposit date:2017-09-12
Release date:2018-10-10
Last modified:2019-10-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:Development and characterization of a new inhibitor of heme oxygenase activity for cancer treatment.
Arch.Biochem.Biophys., 671, 2019
4TUJ
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BU of 4tuj by Molmil
Crystal structure of monoclonal antibody against neuroblastoma associated antigen.
Descriptor: Heavy chain of monoclonal antibody against neuroblastoma associated antigen, Light chain of monoclonal antibody against neuroblastoma associated antigen, peptide1
Authors:Grudnik, P, Golik, P, Horwacik, I, Zdzalik, M, Rokita, H, Dubin, G.
Deposit date:2014-06-24
Release date:2015-07-15
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Structural Basis of GD2 Ganglioside and Mimetic Peptide Recognition by 14G2a Antibody.
Mol.Cell Proteomics, 14, 2015
6YUB
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BU of 6yub by Molmil
Crystal structure of Uba4 from Chaetomium thermophilum
Descriptor: Adenylyltransferase and sulfurtransferase uba4, ZINC ION
Authors:Grudnik, P, Pabis, M, Ethiraju Ravichandran, K, Glatt, S.
Deposit date:2020-04-26
Release date:2020-07-22
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.195 Å)
Cite:Molecular basis for the bifunctional Uba4-Urm1 sulfur-relay system in tRNA thiolation and ubiquitin-like conjugation.
Embo J., 39, 2020
6YUC
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BU of 6yuc by Molmil
Crystal structure of Uba4-Urm1 from Chaetomium thermophilum
Descriptor: Adenylyltransferase and sulfurtransferase uba4, Ubiquitin-related modifier 1, ZINC ION
Authors:Grudnik, P, Pabis, M, Ethiraju Ravichandran, K, Glatt, S.
Deposit date:2020-04-26
Release date:2020-07-22
Last modified:2020-10-14
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Molecular basis for the bifunctional Uba4-Urm1 sulfur-relay system in tRNA thiolation and ubiquitin-like conjugation.
Embo J., 39, 2020
6Z6S
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BU of 6z6s by Molmil
Crystal structure of Uba4-Urm1 from Chaetomium thermophilum
Descriptor: Adenylyltransferase and sulfurtransferase uba4, Ubiquitin-related modifier 1, ZINC ION
Authors:Grudnik, P, Pabis, M, Ethiraju Ravichandran, K, Glatt, S.
Deposit date:2020-05-29
Release date:2020-07-22
Last modified:2020-10-14
Method:X-RAY DIFFRACTION (3.153 Å)
Cite:Molecular basis for the bifunctional Uba4-Urm1 sulfur-relay system in tRNA thiolation and ubiquitin-like conjugation.
Embo J., 39, 2020
8A0E
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BU of 8a0e by Molmil
CryoEM structure of DHS-eIF5A1 complex
Descriptor: Deoxyhypusine synthase, Eukaryotic translation initiation factor 5A, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Wator, E, Wilk, P, Biela, A.P, Rawski, M, Grudnik, P.
Deposit date:2022-05-27
Release date:2023-04-05
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Cryo-EM structure of human eIF5A-DHS complex reveals the molecular basis of hypusination-associated neurodegenerative disorders.
Nat Commun, 14, 2023
8A0G
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BU of 8a0g by Molmil
Human deoxyhypusine synthase with trapped transition state
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, 1,3-DIAMINOPROPANE, Deoxyhypusine synthase, ...
Authors:Wator, E, Wilk, P, Grudnik, P.
Deposit date:2022-05-27
Release date:2023-04-05
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Cryo-EM structure of human eIF5A-DHS complex reveals the molecular basis of hypusination-associated neurodegenerative disorders.
Nat Commun, 14, 2023
8A0F
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BU of 8a0f by Molmil
Crystal structure of human deoxyhypusine synthase variant K329A in complex with NAD and SPD
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, 1,2-ETHANEDIOL, Deoxyhypusine synthase, ...
Authors:Wator, E, Wilk, P, Grudnik, P.
Deposit date:2022-05-27
Release date:2023-04-05
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Cryo-EM structure of human eIF5A-DHS complex reveals the molecular basis of hypusination-associated neurodegenerative disorders.
Nat Commun, 14, 2023
6FMG
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BU of 6fmg by Molmil
Structure of the Mannose Transporter IIA Domain from Streptococcus pneumoniae
Descriptor: PTS system mannose-specific transporter subunit IIAB
Authors:Magoch, M, Grudnik, P.
Deposit date:2018-01-31
Release date:2019-03-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of the Mannose Transporter IIA Domain from Streptococcus pneumoniae
To Be Published
4GR2
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BU of 4gr2 by Molmil
Structure of AtRbcX1 from Arabidopsis thaliana.
Descriptor: AtRbcX1
Authors:Golik, P, Grudnik, P, Kolesinski, P, Dubin, G, Szczepaniak, A.
Deposit date:2012-08-24
Release date:2013-01-30
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Insights into eukaryotic Rubisco assembly - Crystal structures of RbcX chaperones from Arabidopsis thaliana.
Biochim.Biophys.Acta, 1830, 2013
5J8O
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BU of 5j8o by Molmil
Structure of human Programmed cell death 1 ligand 1 (PD-L1) with low molecular mass inhibitor
Descriptor: (2R)-1-({3-bromo-4-[(2-methyl[1,1'-biphenyl]-3-yl)methoxy]phenyl}methyl)piperidine-2-carboxylic acid, Programmed cell death 1 ligand 1
Authors:Zak, K.M, Grudnik, P, Guzik, K, Zieba, B.J, Musielak, B, Doemling, P, Dubin, G, Holak, T.A.
Deposit date:2016-04-08
Release date:2016-04-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for small molecule targeting of the programmed death ligand 1 (PD-L1).
Oncotarget, 7, 2016
5J89
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BU of 5j89 by Molmil
Structure of human Programmed cell death 1 ligand 1 (PD-L1) with low molecular mass inhibitor
Descriptor: 1,2-ETHANEDIOL, N-{2-[({2-methoxy-6-[(2-methyl[1,1'-biphenyl]-3-yl)methoxy]pyridin-3-yl}methyl)amino]ethyl}acetamide, Programmed cell death 1 ligand 1
Authors:Zak, K.M, Grudnik, P, Guzik, K, Zieba, B.J, Musielak, B, Doemling, P, Dubin, G, Holak, T.A.
Deposit date:2016-04-07
Release date:2016-04-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for small molecule targeting of the programmed death ligand 1 (PD-L1).
Oncotarget, 7, 2016
4XOJ
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BU of 4xoj by Molmil
Structure of bovine trypsin in complex with analogues of sunflower inhibitor 1 (SFTI-1)
Descriptor: 1,2-ETHANEDIOL, AMMONIUM ION, CALCIUM ION, ...
Authors:Golik, P, Malicki, S, Grudnik, P, Karna, N, Debowski, D, Legowska, A, Wladyka, B, Gitlin, A, Brzozowski, K, Dubin, G, Rolka, K.
Deposit date:2015-01-16
Release date:2015-08-12
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (0.91 Å)
Cite:Investigation of Serine-Proteinase-Catalyzed Peptide Splicing in Analogues of Sunflower Trypsin Inhibitor 1 (SFTI-1).
Chembiochem, 16, 2015
6R2N
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BU of 6r2n by Molmil
Crystal structure of KlGlk1 glucokinase from Kluyveromyces lactis
Descriptor: 1,2-ETHANEDIOL, BROMIDE ION, Glucokinase-1
Authors:Zak, K, Wator, E, Grudnik, P.
Deposit date:2019-03-18
Release date:2019-10-16
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.596 Å)
Cite:Crystal Structure of Kluyveromyces lactis Glucokinase ( Kl Glk1).
Int J Mol Sci, 20, 2019
4TRP
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BU of 4trp by Molmil
Crystal structure of monoclonal antibody against neuroblastoma associated antigen.
Descriptor: Heavy chain of monoclonal antibody against neuroblastoma associated antigen, Light chain of monoclonal antibody against neuroblastoma associated antigen
Authors:Horwacik, I, Golik, P, Grudnik, P, Zdzalik, M, Rokita, H, Dubin, G.
Deposit date:2014-06-17
Release date:2015-07-15
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Structural Basis of GD2 Ganglioside and Mimetic Peptide Recognition by 14G2a Antibody.
Mol.Cell Proteomics, 14, 2015
4TUL
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BU of 4tul by Molmil
Crystal structure of monoclonal antibody against neuroblastoma associated antigen.
Descriptor: ACETATE ION, Heavy chain of monoclonal antibody against neuroblastoma associated antigen, Light chain of monoclonal antibody against neuroblastoma associated antigen, ...
Authors:Golik, P, Grudnik, P, Dubin, G, Zdzalik, M, Rokita, H, Horwacik, I.
Deposit date:2014-06-24
Release date:2015-07-15
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural Basis of GD2 Ganglioside and Mimetic Peptide Recognition by 14G2a Antibody.
Mol.Cell Proteomics, 14, 2015
4TUK
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BU of 4tuk by Molmil
Crystal structure of monoclonal antibody against neuroblastoma associated antigen.
Descriptor: CHLORIDE ION, Heavy chain of monoclonal antibody against neuroblastoma associated antigen, Light chain of monoclonal antibody against neuroblastoma associated antigen, ...
Authors:Golik, P, Grudnik, P, Dubin, G, Horwacik, I, Zdzalik, M, Rokita, H.
Deposit date:2014-06-24
Release date:2015-07-15
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural Basis of GD2 Ganglioside and Mimetic Peptide Recognition by 14G2a Antibody.
Mol.Cell Proteomics, 14, 2015
4TUO
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BU of 4tuo by Molmil
Crystal structure of monoclonal antibody against neuroblastoma associated antigen.
Descriptor: Heavy chain of monoclonal antibody against neuroblastoma associated antigen, Light chain of monoclonal antibody against neuroblastoma associated antigen, N-acetyl-alpha-neuraminic acid-(2-8)-N-acetyl-alpha-neuraminic acid-(2-3)-[2-acetamido-2-deoxy-beta-D-galactopyranose-(1-4)]beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose, ...
Authors:Golik, P, Grudnik, P, Horwacik, I, Zdzalik, M, Rokita, H, Dubin, G.
Deposit date:2014-06-24
Release date:2015-07-15
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural Basis of GD2 Ganglioside and Mimetic Peptide Recognition by 14G2a Antibody.
Mol.Cell Proteomics, 14, 2015
7Q5N
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BU of 7q5n by Molmil
Crystal structure of Chaetomium thermophilum Ahp1-Urm1 complex
Descriptor: Thioredoxin domain-containing protein, Ubiquitin-related modifier 1, ZINC ION
Authors:Ravichandran, K.E, Wilk, P, Grudnik, P, Glatt, S.
Deposit date:2021-11-04
Release date:2022-08-24
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:E2/E3-independent ubiquitin-like protein conjugation by Urm1 is directly coupled to cysteine persulfidation.
Embo J., 41, 2022
7Q69
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BU of 7q69 by Molmil
Crystal structure of Chaetomium thermophilum C30S Ahp1 in the pre-reaction state
Descriptor: GLYCEROL, SULFATE ION, Thioredoxin domain-containing protein
Authors:Ravichandran, K.E, Wilk, P, Grudnik, P, Glatt, S.
Deposit date:2021-11-05
Release date:2022-08-24
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:E2/E3-independent ubiquitin-like protein conjugation by Urm1 is directly coupled to cysteine persulfidation.
Embo J., 41, 2022
7Q6A
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BU of 7q6a by Molmil
Crystal structure of Chaetomium thermophilum C30S Ahp1 in post-reaction state
Descriptor: GLYCEROL, SULFATE ION, Thioredoxin domain-containing protein
Authors:Ravichandran, K.E, Wilk, P, Grudnik, P, Glatt, S.
Deposit date:2021-11-05
Release date:2022-08-24
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:E2/E3-independent ubiquitin-like protein conjugation by Urm1 is directly coupled to cysteine persulfidation.
Embo J., 41, 2022

 

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