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219D
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BU of 219d by Molmil
DNA/RNA HYBRID DUPLEX (5'-D(*GP*CP*TP*AP*TP*AP*APS*TP*GP*G)-3')(DOT) (5'-R(*CP*CP*AP*UP*UP*AP*UP*AP*GP*C)-3') WITH A PHOSPHOROTHIOATE MOIETY
Descriptor: DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*TP*GP*G)-3'), RNA (5'-R(*CP*CP*AP*UP*UP*AP*UP*AP*GP*C)-3')
Authors:Gonzalez, C, James, T.L.
Deposit date:1995-07-25
Release date:1995-10-15
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Structure and dynamics of a DNA.RNA hybrid duplex with a chiral phosphorothioate moiety: NMR and molecular dynamics with conventional and time-averaged restraints.
Biochemistry, 34, 1995
1H20
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BU of 1h20 by Molmil
Solution structure of the potato carboxypeptidase inhibitor
Descriptor: METALLOCARBOXYPEPTIDASE INHIBITOR
Authors:Gonzalez, C, Neira, J.L, Ventura, S, Bronsoms, S, Aviles, F.X, Rico, M.
Deposit date:2002-07-29
Release date:2003-05-09
Last modified:2011-12-28
Method:SOLUTION NMR
Cite:Structure and Dynamics of the Potato Carboxypeptidase Inhibitor by 1H and 15N NMR.
Proteins, 50, 2003
1E68
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BU of 1e68 by Molmil
Solution structure of bacteriocin AS-48
Descriptor: AS-48 PROTEIN
Authors:Gonzalez, C, Langdon, G, Bruix, M, Galvez, A, Valdivia, E, Maqueda, M, Rico, M.
Deposit date:2000-08-09
Release date:2000-10-25
Last modified:2011-08-03
Method:SOLUTION NMR
Cite:Bacteriocin as-48, a Microbial Cyclic Polypeptide Structurally and Functionally Related to Mammalian Nk-Lysin
Proc.Natl.Acad.Sci.USA, 97, 2000
2KP4
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BU of 2kp4 by Molmil
Structure of 2'F-ANA/RNA hybrid duplex
Descriptor: DNA (5'-D(*(GFL)P*(CFL)P*(TAF)P*(A5L)P*(TAF)P*(A5L)P*(A5L)P*(TAF)P*(GFL)P*(GFL))-3'), RNA (5'-R(*CP*CP*AP*UP*UP*AP*UP*AP*GP*C)-3')
Authors:Gonzalez, C, Martin-Pintado, N, Watts, J, Gomez-Pinto, I, Dhama, M, Orozco, M, Schwartzentruber, J, Portella, G.
Deposit date:2009-10-06
Release date:2010-02-09
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Differential stability of 2'F-ANA*RNA and ANA*RNA hybrid duplexes: roles of structure, pseudohydrogen bonding, hydration, ion uptake and flexibility.
Nucleic Acids Res., 38, 2010
2KP3
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BU of 2kp3 by Molmil
Structure of ANA-RNA hybrid duplex
Descriptor: RNA (5'-R(*(GAO)P*(CAR)P*(UAR)P*(A5O)P*(UAR)P*(A5O)P*(A5O)P*(UAR)P*(GAO)P*(GAO))-3'), RNA (5'-R(*CP*CP*AP*UP*UP*AP*UP*AP*GP*C)-3')
Authors:Gonzalez, C, Martn-Pintado, N, Watts, J, Gomez-Pinto, I, Dhama, M, Orozco, M, Schwartzentruber, J, Portella, G.
Deposit date:2009-10-06
Release date:2010-02-09
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Differential stability of 2'F-ANA*RNA and ANA*RNA hybrid duplexes: roles of structure, pseudohydrogen bonding, hydration, ion uptake and flexibility.
Nucleic Acids Res., 38, 2010
2AAS
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BU of 2aas by Molmil
HIGH-RESOLUTION THREE-DIMENSIONAL STRUCTURE OF RIBONUCLEASE A IN SOLUTION BY NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY
Descriptor: RIBONUCLEASE A
Authors:Santoro, J, Gonzalez, C, Bruix, M, Neira, J.L, Nieto, J.L, Herranz, J, Rico, M.
Deposit date:1992-11-20
Release date:1994-01-31
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:High-resolution three-dimensional structure of ribonuclease A in solution by nuclear magnetic resonance spectroscopy.
J.Mol.Biol., 229, 1993
2CMN
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BU of 2cmn by Molmil
A Proximal Arginine Residue in the Switching Mechanism of the FixL Oxygen Sensor
Descriptor: PROTOPORPHYRIN IX CONTAINING FE, SENSOR PROTEIN FIXL
Authors:Gilles-Gonzalez, M.-A, Caceres, A.I, Silva Sousa, E.H, Tomchick, D.R, Brautigam, C.A, Gonzalez, C, Machius, M.
Deposit date:2006-05-11
Release date:2007-05-15
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A Proximal Arginine R206 Participates in Switching of the Bradyrhizobium Japonicum Fixl Oxygen Sensor
J.Mol.Biol., 360, 2006
8OFC
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BU of 8ofc by Molmil
Structure of an i-motif domain with the cytosine analog 1,3-diaza-2-oxophenoxacione (tC) at neutral pH
Descriptor: DNA (5'-D(*CP*(YCO)P*GP*TP*TP*CP*(DNR)P*GP*TP*TP*TP*TP*TP*CP*CP*GP*TP*TP*CP*(DNR)P*GP*T)-3')
Authors:Mir, B, Serrano-Chacon, I, Terrazas, M, Gandioso, A, Garavis, M, Orozco, M, Escaja, N, Gonzalez, C.
Deposit date:2023-03-15
Release date:2024-02-07
Last modified:2024-03-06
Method:SOLUTION NMR
Cite:Site-specific incorporation of a fluorescent nucleobase analog enhances i-motif stability and allows monitoring of i-motif folding inside cells.
Nucleic Acids Res., 2024
8PWR
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BU of 8pwr by Molmil
TINA-conjugated antiparallel DNA triplex
Descriptor: DNA (5'-D(*AP*GP*GP*AP*GP*GP*A)-3'), DNA (5'-D(*TP*CP*CP*TP*CP*CP*T)-3'), DNA (5'-D(*TP*GP*GP*TP*GP*(J32)P*GP*T)-3')
Authors:Garavis, M, Edwards, P.J.B, Serrano-Chacon, I, Doluca, O, Filichev, V.V, Gonzalez, C.
Deposit date:2023-07-21
Release date:2024-01-17
Last modified:2024-03-27
Method:SOLUTION NMR
Cite:Understanding intercalative modulation of G-rich sequence folding: solution structure of a TINA-conjugated antiparallel DNA triplex.
Nucleic Acids Res., 52, 2024
1TRL
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BU of 1trl by Molmil
NMR SOLUTION STRUCTURE OF THE C-TERMINAL FRAGMENT 255-316 OF THERMOLYSIN: A DIMER FORMED BY SUBUNITS HAVING THE NATIVE STRUCTURE
Descriptor: THERMOLYSIN FRAGMENT 255 - 316
Authors:Rico, M, Jimenez, M.A, Gonzalez, C, De Filippis, V, Fontana, A.
Deposit date:1994-09-02
Release date:1995-02-07
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:NMR solution structure of the C-terminal fragment 255-316 of thermolysin: a dimer formed by subunits having the native structure.
Biochemistry, 33, 1994
1N96
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BU of 1n96 by Molmil
DIMERIC SOLUTION STRUCTURE OF THE CYCLIC OCTAMER CD(CGCTCATT)
Descriptor: CYCLIC OLIGONUCLEOTIDE D(CGCTCATT)
Authors:Escaja, N, Gelpi, J.L, Orozco, M, Rico, M, Pedroso, E, Gonzalez, C.
Deposit date:2002-11-22
Release date:2003-05-13
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Four-stranded DNA structure stabilized by a novel G:C:A:T tetrad.
J.Am.Chem.Soc., 125, 2003
1EU2
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BU of 1eu2 by Molmil
DIMERIC SOLUTION STRUCTURE OF THE CYCLIC OCTAMER CD(TGCTCGCT)
Descriptor: CYCLIC OLIGONUCLEOTIDE D(TGCTCGCT)
Authors:Escaja, N, Pedroso, E, Rico, M, Gonzalez, C.
Deposit date:2000-04-13
Release date:2001-01-24
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Dimeric Solution Structure of Two Cyclic Octamers: Four-Stranded DNA Structures Stabilized by A:T:A:T and G:C:G:C
J.Am.Chem.Soc., 122, 2000
1EU6
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BU of 1eu6 by Molmil
DIMERIC SOLUTION STRUCTURE OF THE CYCLIC OCTAMER CD(CATTCATT)
Descriptor: CYCLIC OLIGONUCLEOTIDE D(CATTCATT)
Authors:Escaja, N, Pedroso, E, Rico, M, Gonzalez, C.
Deposit date:2000-04-14
Release date:2001-01-24
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Dimeric Solution Structure of Two Cyclic Octamers: Four-Stranded DNA Structures Stabilized by A:T:A:T and G:C:G:C
J.Am.Chem.Soc., 122, 2000
1GL8
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BU of 1gl8 by Molmil
Solution structure of thioredoxin m from spinach, oxidized form
Descriptor: THIOREDOXIN
Authors:Neira, J.L, Gonzalez, C, Toiron, C, De-Prat-gay, G, Rico, M.
Deposit date:2001-08-30
Release date:2001-12-13
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Three-Dimensional Solution Structure and Stability of Thioredoxin M from Spinach.
Biochemistry, 40, 2001
7NEJ
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BU of 7nej by Molmil
Solution structure of DNA:RNA hybrid duplex
Descriptor: DNA (5'-D(*CP*TP*AP*CP*AP*CP*GP*G)-3'), RNA (5'-R(*CP*CP*GP*UP*GP*UP*AP*G)-3')
Authors:Cabrero, C, Martin-Pintado, N, Mazzini, S, Gargallo, R, Eritja, R, Avino, A, Gonzalez, C.
Deposit date:2021-02-04
Release date:2021-04-07
Method:SOLUTION NMR
Cite:Structural Effects of Incorporation of 2 -Deoxy-2 2 -difluorodeoxycytidine (Gemcitabine) in A- and B-form Duplexes.
Chemistry, 2021
7NBK
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BU of 7nbk by Molmil
Solution structure of DNA duplex containing a 2'-deoxy-2'2'-difluorodeoxycytidine (gemcitabine) modification
Descriptor: DNA (5'-D(*CP*GP*TP*AP*(FFC)P*G)-3')
Authors:Cabrero, C, Martin-Pintado, N, Mazzini, S, Gargallo, R, Eritja, R, Avino, A, Gonzalez, C.
Deposit date:2021-01-27
Release date:2021-04-07
Method:SOLUTION NMR
Cite:Structural Effects of Incorporation of 2 -Deoxy-2 2 -difluorodeoxycytidine (Gemcitabine) in A- and B-form Duplexes.
Chemistry, 2021
7NBL
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BU of 7nbl by Molmil
Solution structure of DNA:RNA hybrid containing a 2'-deoxy-2'2'-difluorodeoxycytidine (gemcitabine) modification
Descriptor: DNA (5'-D(*CP*TP*AP*(FFC)P*AP*CP*GP*G)-3'), RNA (5'-R(*CP*CP*GP*UP*GP*UP*AP*G)-3')
Authors:Cabrero, C, Martin-Pintado, N, Mazzini, S, Gargallo, R, Eritja, R, Avino, A, Gonzalez, C.
Deposit date:2021-01-27
Release date:2021-04-07
Method:SOLUTION NMR
Cite:Structural Effects of Incorporation of 2 -Deoxy-2 2 -difluorodeoxycytidine (Gemcitabine) in A- and B-form Duplexes.
Chemistry, 2021
2KSS
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BU of 2kss by Molmil
NMR structure of Myxococcus xanthus antirepressor CarS1
Descriptor: Carotenogenesis protein carS
Authors:Jimenez, M, Gonzalez, C, Padmanabhan, S, Leon, E, Navarro-Aviles, G, Elias-Arnanz, M.
Deposit date:2010-01-13
Release date:2010-05-12
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:A bacterial antirepressor with SH3 domain topology mimics operator DNA in sequestering the repressor DNA recognition helix.
Nucleic Acids Res., 38, 2010
3GWH
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BU of 3gwh by Molmil
Crystallographic Ab Initio protein solution far below atomic resolution
Descriptor: PHOSPHATE ION, Transcriptional antiterminator (BglG family)
Authors:Rodriguez, D.D, Grosse, C, Himmel, S, Gonzalez, C, Becker, S, Sheldrick, G.M, Uson, I.
Deposit date:2009-04-01
Release date:2010-04-07
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystallographic ab initio protein structure solution below atomic resolution
Nat.Methods, 6, 2009
1RSB
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BU of 1rsb by Molmil
X-ray study of the DNA oligomer d(ATATAT) in P65 space group
Descriptor: 5'-D(*AP*TP*AP*TP*AP*T)-3'
Authors:Abrescia, N.G, Gonzalez, C, Gouyette, C, Subirana, J.A.
Deposit date:2003-12-09
Release date:2004-05-25
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:X-ray and NMR studies of the DNA oligomer d(ATATAT): Hoogsteen base pairing in duplex DNA.
Biochemistry, 43, 2004
6FC9
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BU of 6fc9 by Molmil
The 1,8-bis(aminomethyl)anthracene and Quadruplex-duplex junction complex
Descriptor: DNA (27-MER), [8-(azaniumylmethyl)anthracen-1-yl]methylazanium
Authors:Santana, A, Serrano, I, Montalvillo-Jimenez, L, Corzana, F, Bastida, A, Jimenez-Barbero, J, Gonzalez, C, Asensio, J.L.
Deposit date:2017-12-20
Release date:2019-04-10
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:De Novo Design of Selective Quadruplex-Duplex Junction Ligands and Structural Characterisation of Their Binding Mode: Targeting the G4 Hot-Spot.
Chemistry, 2020
1SSJ
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BU of 1ssj by Molmil
A DNA DUPLEX CONTAINING A CHOLESTEROL ADDUCT (BETA-ANOMER)
Descriptor: 5'-D(*CP*CP*AP*CP*(HOB)P*GP*GP*AP*AP*C)-3', 5'-D(GP*TP*TP*CP*CP*GP*GP*TP*GP*G)-3'
Authors:Gomez-Pinto, I, Cubero, E, Kalko, S.G, Monaco, V, van der Marel, G, van Boom, J.H, Orozco, M, Gonzalez, C.
Deposit date:2004-03-24
Release date:2004-06-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Effect of bulky lesions on DNA: Solution structure of a DNA duplex containing a cholesterol adduct.
J.Biol.Chem., 279, 2004
7ZYX
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BU of 7zyx by Molmil
Dimeric i-motif from 2'Farabinocytidine-modified TC5
Descriptor: DNA (5'-D(*TP*(CFL)P*(CFL)P*(CFL)P*(CFL)P*(CFL))-3')
Authors:Garavis, M, El Khoury, R, Damha, M.J, Gonzalez, C.
Deposit date:2022-05-25
Release date:2023-03-01
Method:SOLUTION NMR
Cite:i-Motif folding intermediates with zero-nucleotide loops are trapped by 2'-fluoroarabinocytidine via F···H and O···H hydrogen bonds.
Commun Chem, 6, 2023
2M1G
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BU of 2m1g by Molmil
Parallel human telomeric quadruplex containing 2'F-ANA substitutions
Descriptor: 5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*(GFL)P*GP*GP*T)-3'
Authors:Martin-Pintado, N, Yahyaee-Anzahaee, M, Deleavey, G.F, Portella, G, Orozco, M, Damha, M.J, Gonzalez, C.
Deposit date:2012-11-27
Release date:2013-05-08
Method:SOLUTION NMR
Cite:Dramatic effect of furanose c2' substitution on structure and stability: directing the folding of the human telomeric quadruplex with a single fluorine atom.
J.Am.Chem.Soc., 135, 2013
2M8A
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BU of 2m8a by Molmil
2'F-ANA/2'F-RNA alternated sequences
Descriptor: 2'F-RNA/2'F-ANA chimeric duplex
Authors:Martin-Pintado, N, Deleavey, G, Portella, G, Campos, R, Orozco, M, Damha, M, Gonzalez, C.
Deposit date:2013-05-14
Release date:2013-11-27
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Backbone FCHO Hydrogen Bonds in 2'F-Substituted Nucleic Acids.
Angew.Chem.Int.Ed.Engl., 52, 2013

 

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