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7QB3
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BU of 7qb3 by Molmil
Solution structure of a lanthanide-binding DNA aptamer
Descriptor: LUTETIUM (III) ION, Lanthanide-binding aptamer
Authors:Andralojc, W, Gdaniec, Z.
Deposit date:2021-11-18
Release date:2021-12-01
Last modified:2022-12-21
Method:SOLUTION NMR
Cite:Solution Structure of a Lanthanide-binding DNA Aptamer Determined Using High Quality pseudocontact shift restraints.
Chemistry, 28, 2022
1FEQ
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BU of 1feq by Molmil
NMR SOLUTION STRUCTURE OF THE ANTICODON OF TRNA(LYS3) WITH T6A MODIFICATION AT POSITION 37
Descriptor: 5'-R(*GP*CP*AP*GP*AP*CP*UP*UP*UP*UP*(T6A)P*AP*UP*CP*UP*GP*C)-3'
Authors:Stuart, J.W, Gdaniec, Z, Guenther, R.H, Marszalek, M, Sochacka, E, Malkiewicz, A, Agris, P.F.
Deposit date:2000-07-21
Release date:2000-11-22
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Functional anticodon architecture of human tRNALys3 includes disruption of intraloop hydrogen bonding by the naturally occurring amino acid modification, t6A.
Biochemistry, 39, 2000
1XV6
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BU of 1xv6 by Molmil
The solution structure of 2',5'-linked 3'-O-(2-methoxyethyl)-RNA hairpin
Descriptor: 5'-R(*(C2L)P*(G2L)P*(C2L)P*(G2L)P*(A2L)P*(A2L)P*(U2L)P*(U2L)P*(C2L)P*(G2L)P*(C2L)P*(G2L))-2'
Authors:Plevnik, M, Gdaniec, Z, Plavec, J.
Deposit date:2004-10-27
Release date:2005-04-05
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution structure of a modified 2',5'-linked RNA hairpin involved in an equilibrium with duplex
Nucleic Acids Res., 33, 2005
8OR8
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BU of 8or8 by Molmil
Solution structure of the 8-17 DNAzyme in presence of Zn2+
Descriptor: 8-17 DNAzyme
Authors:Andralojc, W, Gdaniec, Z.
Deposit date:2023-04-13
Release date:2023-04-26
Method:SOLUTION NMR
Cite:The solution structure of 8-17 DNAzyme in the presence of Zn2+
To Be Published
6GE1
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BU of 6ge1 by Molmil
Solution structure of the r(UGGUGGU)4 RNA quadruplex
Descriptor: RNA (5'-R(*UP*GP*GP*UP*GP*GP*U)-3')
Authors:Andralojc, W, Gdaniec, Z.
Deposit date:2018-04-25
Release date:2018-10-31
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Unraveling the structural basis for the exceptional stability of RNA G-quadruplexes capped by a uridine tetrad at the 3' terminus.
RNA, 25, 2019
6I1W
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BU of 6i1w by Molmil
Structure of the RNA duplex containing pseudouridine residue (5'-Gp(PSU)pC-3' sequence context)
Descriptor: RNA (5'-R(*AP*CP*UP*GP*AP*CP*UP*GP*A)-3'), RNA (5'-R(*UP*CP*AP*GP*(PSU)P*CP*AP*GP*U)-3')
Authors:Deb, I, Popenda, L, Sarzynska, J, Gdaniec, Z.
Deposit date:2018-10-30
Release date:2019-11-20
Method:SOLUTION NMR
Cite:Computational and NMR studies of RNA duplexes with an internal pseudouridine-adenosine base pair.
Sci Rep, 9, 2019
6I1V
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BU of 6i1v by Molmil
Structure of the RNA duplex containing pseudouridine residue (5'-Cp(PSU)pG-3' sequence context)
Descriptor: RNA (5'-R(*AP*CP*UP*CP*AP*GP*UP*GP*A)-3'), RNA (5'-R(*UP*CP*AP*CP*(PSU)P*GP*AP*GP*U)-3')
Authors:Deb, I, Popenda, L, Sarzynska, J, Gdaniec, Z.
Deposit date:2018-10-30
Release date:2019-11-20
Method:SOLUTION NMR
Cite:Computational and NMR studies of RNA duplexes with an internal pseudouridine-adenosine base pair.
Sci Rep, 9, 2019
2JXS
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BU of 2jxs by Molmil
NMR structure of RNA duplex containing single adenosine bulge
Descriptor: 5'-R(*CP*GP*CP*UP*CP*UP*CP*UP*GP*C)-3', 5'-R(*GP*CP*AP*GP*AP*AP*GP*AP*GP*CP*G)-3'
Authors:Popenda, L, Adamiak, R.W, Gdaniec, Z.
Deposit date:2007-11-29
Release date:2008-05-20
Last modified:2020-02-26
Method:SOLUTION NMR
Cite:Bulged adenosine influence on the RNA duplex conformation in solution.
Biochemistry, 47, 2008
2K41
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BU of 2k41 by Molmil
NMR structure of uridine bulged RNA duplex
Descriptor: RNA_(5'-R(*CP*AP*GP*CP*CP*GP*AP*C)-3')_, RNA_(5'-R(*GP*UP*CP*GP*UP*GP*CP*UP*G)-3')_
Authors:Popenda, L, Bielecki, L, Gdaniec, Z, Adamiak, R.W.
Deposit date:2008-05-26
Release date:2008-11-04
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Structure and dynamics of adenosine bulged RNA duplex reveals formation of the dinucleotide platform in the C:G-A triple
ARKIVOC, 2009, 2008
2K3Z
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BU of 2k3z by Molmil
NMR structure of adenosine bulged RNA duplex with C:G-A triple
Descriptor: RNA_(5'-R(*CP*AP*GP*CP*CP*GP*AP*C)-3')_, RNA_(5'-R(*GP*UP*CP*GP*AP*GP*CP*UP*G)-3')_
Authors:Popenda, L, Bielecki, L, Gdaniec, Z, Adamiak, R.W.
Deposit date:2008-05-26
Release date:2008-11-04
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Structure and dynamics of adenosine bulged RNA duplex reveals formation of the dinucleotide platform in the C:G-A triple
ARKIVOC, 2009, 2008
2JXQ
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BU of 2jxq by Molmil
NMR structure of RNA duplex
Descriptor: RNA (5'-R(*CP*GP*CP*UP*CP*UP*CP*UP*GP*C)-3'), RNA (5'-R(*GP*CP*AP*GP*AP*GP*AP*GP*CP*G)-3')
Authors:Popenda, L, Adamiak, R.W, Gdaniec, Z.
Deposit date:2007-11-28
Release date:2008-05-20
Last modified:2020-02-26
Method:SOLUTION NMR
Cite:Bulged adenosine influence on the RNA duplex conformation in solution.
Biochemistry, 47, 2008
2MCJ
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BU of 2mcj by Molmil
NMR structure of spermine modified DNA duplex
Descriptor: DNA_(5'-D(*CP*AP*GP*(N4S)P*CP*GP*AP*C)-3'), DNA_(5'-D(*GP*TP*CP*GP*GP*CP*TP*G)-3')
Authors:Brzezinska, J, Gdaniec, Z, Popenda, L, Markiewicz, W.T.
Deposit date:2013-08-20
Release date:2014-01-22
Method:SOLUTION NMR
Cite:Polyaminooligonucleotide: NMR structure of duplex DNA containing a nucleoside with spermine residue, N-[4,9,13-triazatridecan-1-yl]-2'-deoxycytidine.
Biochim.Biophys.Acta, 1840, 2014
2MCI
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BU of 2mci by Molmil
NMR structure of DNA duplex
Descriptor: DNA_(5'-D(*CP*AP*GP*CP*CP*GP*AP*C)-3'), DNA_(5'-D(*GP*TP*CP*GP*GP*CP*TP*G)-3')
Authors:Brzezinska, J, Gdaniec, Z, Popenda, L, Markiewicz, W.T.
Deposit date:2013-08-20
Release date:2014-01-22
Method:SOLUTION NMR
Cite:Polyaminooligonucleotide: NMR structure of duplex DNA containing a nucleoside with spermine residue, N-[4,9,13-triazatridecan-1-yl]-2'-deoxycytidine.
Biochim.Biophys.Acta, 1840, 2014
6F3P
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BU of 6f3p by Molmil
Crystal structure of S-adenosyl-L-homocysteine hydrolase from Pseudomonas aeruginosa in complex with 3'-deoxyadenosine and K+ cation
Descriptor: 3'-DEOXYADENOSINE, Adenosylhomocysteinase, CHLORIDE ION, ...
Authors:Czyrko, J, Brzezinski, K.
Deposit date:2017-11-28
Release date:2018-08-08
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Metal-cation regulation of enzyme dynamics is a key factor influencing the activity of S-adenosyl-L-homocysteine hydrolase from Pseudomonas aeruginosa.
Sci Rep, 8, 2018
6F3Q
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BU of 6f3q by Molmil
Crystal structure of S-adenosyl-L-homocysteine hydrolase from Pseudomonas aeruginosa in complex with adenine and Rb+ cation
Descriptor: ADENINE, Adenosylhomocysteinase, DI(HYDROXYETHYL)ETHER, ...
Authors:Czyrko, J, Brzezinski, K.
Deposit date:2017-11-28
Release date:2018-08-08
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Metal-cation regulation of enzyme dynamics is a key factor influencing the activity of S-adenosyl-L-homocysteine hydrolase from Pseudomonas aeruginosa.
Sci Rep, 8, 2018
6F3O
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BU of 6f3o by Molmil
Crystal structure of S-adenosyl-L-homocysteine hydrolase from Pseudomonas aeruginosa complexed with adenine, K+ and Zn2+ cations
Descriptor: ADENINE, Adenosylhomocysteinase, GLYCEROL, ...
Authors:Czyrko, J, Brzezinski, K.
Deposit date:2017-11-28
Release date:2018-08-08
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Metal-cation regulation of enzyme dynamics is a key factor influencing the activity of S-adenosyl-L-homocysteine hydrolase from Pseudomonas aeruginosa.
Sci Rep, 8, 2018
6F3N
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BU of 6f3n by Molmil
Crystal structure of S-adenosyl-L-homocysteine hydrolase from Pseudomonas aeruginosa cocrystallized with SAH in the presence of K+ and Zn2+ cations
Descriptor: ADENOSINE, Adenosylhomocysteinase, GLYCEROL, ...
Authors:Czyrko, J, Brzezinski, K.
Deposit date:2017-11-28
Release date:2018-08-08
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Metal-cation regulation of enzyme dynamics is a key factor influencing the activity of S-adenosyl-L-homocysteine hydrolase from Pseudomonas aeruginosa.
Sci Rep, 8, 2018
6F3M
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BU of 6f3m by Molmil
Crystal structure of S-adenosyl-L-homocysteine hydrolase from Pseudomonas aeruginosa complexed with adenosine, K+ and Zn2+ cations
Descriptor: ADENOSINE, Adenosylhomocysteinase, GLYCEROL, ...
Authors:Czyrko, J, Brzezinski, K.
Deposit date:2017-11-28
Release date:2018-08-08
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Metal-cation regulation of enzyme dynamics is a key factor influencing the activity of S-adenosyl-L-homocysteine hydrolase from Pseudomonas aeruginosa.
Sci Rep, 8, 2018

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