Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
8CMS
DownloadVisualize
BU of 8cms by Molmil
OTUB2 in covalent complex with LN5P45
Descriptor: (1~{S},2~{S})-~{N}'-ethanoyl-2-(3-methylphenyl)cyclopropane-1-carbohydrazide, Ubiquitin thioesterase OTUB2
Authors:Gan, J, de Vries, J.
Deposit date:2023-02-21
Release date:2023-11-15
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Cellular Validation of a Chemically Improved Inhibitor Identifies Monoubiquitination on OTUB2.
Acs Chem.Biol., 18, 2023
1YYK
DownloadVisualize
BU of 1yyk by Molmil
Crystal structure of RNase III from Aquifex Aeolicus complexed with double-stranded RNA at 2.5-angstrom resolution
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5'-R(*CP*GP*CP*GP*AP*AP*UP*UP*CP*GP*CP*G)-3', Ribonuclease III
Authors:Gan, J, Tropea, J.E, Austin, B.P, Court, D.L, Waugh, D.S, Ji, X.
Deposit date:2005-02-25
Release date:2005-11-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Intermediate states of ribonuclease III in complex with double-stranded RNA
Structure, 13, 2005
1YYO
DownloadVisualize
BU of 1yyo by Molmil
Crystal structure of RNase III mutant E110K from Aquifex aeolicus complexed with double-stranded RNA at 2.9-Angstrom Resolution
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5'-R(*CP*GP*CP*GP*AP*AP*UP*UP*CP*GP*CP*G)-3', Ribonuclease III
Authors:Gan, J, Tropea, J.E, Austin, B.P, Court, D.L, Waugh, D.S, Ji, X.
Deposit date:2005-02-25
Release date:2005-11-22
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Intermediate states of ribonuclease III in complex with double-stranded RNA
Structure, 13, 2005
1YZ9
DownloadVisualize
BU of 1yz9 by Molmil
Crystal structure of RNase III mutant E110Q from Aquifex aeolicus complexed with double stranded RNA at 2.1-Angstrom Resolution
Descriptor: 5'-R(*CP*GP*AP*AP*CP*UP*UP*CP*GP*CP*G)-3', Ribonuclease III, SULFATE ION
Authors:Gan, J, Tropea, J.E, Austin, B.P, Court, D.L, Waugh, D.S, Ji, X.
Deposit date:2005-02-28
Release date:2005-11-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Intermediate states of ribonuclease III in complex with double-stranded RNA
Structure, 13, 2005
1YYW
DownloadVisualize
BU of 1yyw by Molmil
Crystal structure of RNase III from Aquifex aeolicus complexed with double stranded RNA at 2.8-Angstrom Resolution
Descriptor: 5'-R(*AP*AP*AP*UP*AP*UP*AP*UP*AP*UP*UP*U)-3', Ribonuclease III
Authors:Gan, J, Tropea, J.E, Austin, B.P, Court, D.L, Waugh, D.S, Ji, X.
Deposit date:2005-02-25
Release date:2005-11-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Intermediate states of ribonuclease III in complex with double-stranded RNA
Structure, 13, 2005
2EZ6
DownloadVisualize
BU of 2ez6 by Molmil
Crystal structure of Aquifex aeolicus RNase III (D44N) complexed with product of double-stranded RNA processing
Descriptor: 28-MER, MAGNESIUM ION, Ribonuclease III
Authors:Gan, J, Tropea, J.E, Austin, B.P, Court, D.L, Waugh, D.S, Ji, X.
Deposit date:2005-11-10
Release date:2006-02-07
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural Insight into the Mechanism of Double-Stranded RNA Processing by Ribonuclease III.
Cell(Cambridge,Mass.), 124, 2006
2G1K
DownloadVisualize
BU of 2g1k by Molmil
Crystal structure of Mycobacterium tuberculosis shikimate kinase in complex with shikimate at 1.75 angstrom resolution
Descriptor: (3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC ACID, CHLORIDE ION, SULFATE ION, ...
Authors:Gan, J, Gu, Y, Li, Y, Yan, H, Ji, X.
Deposit date:2006-02-14
Release date:2006-07-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal Structure of Mycobacterium tuberculosis Shikimate Kinase in Complex with Shikimic Acid and an ATP Analogue.
Biochemistry, 45, 2006
2G1J
DownloadVisualize
BU of 2g1j by Molmil
Crystal structure of Mycobacterium tuberculosis Shikimate Kinase at 2.0 angstrom resolution
Descriptor: SULFATE ION, Shikimate kinase
Authors:Gan, J, Gu, Y, Li, Y, Yan, H, Ji, X.
Deposit date:2006-02-14
Release date:2006-07-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Mycobacterium tuberculosis Shikimate Kinase in Complex with Shikimic Acid and an ATP Analogue.
Biochemistry, 45, 2006
5JRE
DownloadVisualize
BU of 5jre by Molmil
Crystal structure of NeC3PO in complex with ssDNA.
Descriptor: 9-METHYL-9H-PURIN-6-AMINE, ADENINE, NEQ131, ...
Authors:Gan, J, Zhang, J.
Deposit date:2016-05-06
Release date:2016-09-28
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for single-stranded RNA recognition and cleavage by C3PO
Nucleic Acids Res., 44, 2016
4M2Z
DownloadVisualize
BU of 4m2z by Molmil
Crystal structure of RNASE III complexed with double-stranded RNA and CMP (TYPE II CLEAVAGE)
Descriptor: CYTIDINE-5'-MONOPHOSPHATE, MAGNESIUM ION, RNA10, ...
Authors:Gan, J, Liang, Y.-H, Shaw, G.X, Tropea, J.E, Waugh, D.S, Ji, X.
Deposit date:2013-08-05
Release date:2013-12-11
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:RNase III: Genetics and Function; Structure and Mechanism.
Annu. Rev. Genet., 47, 2013
4M30
DownloadVisualize
BU of 4m30 by Molmil
Crystal structure of RNASE III complexed with double-stranded RNA AND AMP (TYPE II CLEAVAGE)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ADENOSINE-5'-MONOPHOSPHATE, MAGNESIUM ION, ...
Authors:Gan, J, Liang, Y.-H, Shaw, G.X, Tropea, J.E, Waugh, D.S, Ji, X.
Deposit date:2013-08-05
Release date:2013-12-11
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.501 Å)
Cite:RNase III: Genetics and Function; Structure and Mechanism.
Annu. Rev. Genet., 47, 2013
8GKV
DownloadVisualize
BU of 8gkv by Molmil
Crystal structure of anti-adaptor IraP that regulates RpoS proteolysis
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
Authors:Shaw, G.X, Gan, J, Suburaman, P, Battesti, A, Zhou, Y.N, Wickner, S, Gottesman, S, Ji, X.
Deposit date:2023-03-20
Release date:2024-03-27
Method:X-RAY DIFFRACTION (2.351 Å)
Cite:Structural and functional study of anti-adaptor IraP-mediated regulation of RpoS proteolysis
to be published
4QKN
DownloadVisualize
BU of 4qkn by Molmil
Crystal structure of FTO bound to a selective inhibitor
Descriptor: 2-[(2,6-dichloro-3-methyl-phenyl)amino]benzoic acid, Alpha-ketoglutarate-dependent dioxygenase FTO, GLYCEROL, ...
Authors:Yang, C.-G, Huang, Y, Gan, J.
Deposit date:2014-06-07
Release date:2014-12-03
Last modified:2022-08-24
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Meclofenamic acid selectively inhibits FTO demethylation of m6A over ALKBH5.
Nucleic Acids Res., 43, 2015
4R4Z
DownloadVisualize
BU of 4r4z by Molmil
Structure of PNGF-II in P21 space group
Descriptor: PNGF-II
Authors:Sun, G, Yu, X, Celimuge, Wang, L, Li, M, Gan, J, Qu, D, Ma, J, Chen, L.
Deposit date:2014-08-20
Release date:2015-01-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Identification and Characterization of a Novel Prokaryotic Peptide: N-glycosidase from Elizabethkingia meningoseptica
J.Biol.Chem., 2015
4R4X
DownloadVisualize
BU of 4r4x by Molmil
Structure of PNGF-II in C2 space group
Descriptor: PNGF-II, ZINC ION
Authors:Sun, G, Yu, X, Celimuge, Wang, L, Li, M, Gan, J, Qu, D, Ma, J, Chen, L.
Deposit date:2014-08-20
Release date:2015-01-28
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Identification and Characterization of a Novel Prokaryotic Peptide: N-glycosidase from Elizabethkingia meningoseptica
J.Biol.Chem., 2015
3LTR
DownloadVisualize
BU of 3ltr by Molmil
5-OMe-dU containing DNA 8mer
Descriptor: 5'-D(*GP*(UMS)P*GP*(T5O)P*AP*CP*AP*C)-3', MAGNESIUM ION
Authors:Sheng, J, Hassan, A.E.A, Zhang, W, Gan, J, Huang, Z.
Deposit date:2010-02-16
Release date:2010-03-09
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Hydrogen bond formation between the naturally modified nucleobase and phosphate backbone.
Nucleic Acids Res., 40, 2012
3DJ9
DownloadVisualize
BU of 3dj9 by Molmil
Crystal Structure of an isolated, unglycosylated antibody CH2 domain
Descriptor: Ig gamma-1 chain C region
Authors:Prabakaran, P, Vu, B.K, Gan, J, Dimitrov, D.S, Ji, X.
Deposit date:2008-06-22
Release date:2008-09-16
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structure of an isolated unglycosylated antibody C(H)2 domain.
Acta Crystallogr.,Sect.D, 64, 2008
4MSR
DownloadVisualize
BU of 4msr by Molmil
RNA 10mer duplex with six 2'-5'-linkages
Descriptor: RNA 10mer duplex with six 2'-5'-linkages, STRONTIUM ION
Authors:Sheng, J, Li, L, Engelhart, A.E, Gan, J, Wang, J, Szostak, J.W.
Deposit date:2013-09-18
Release date:2014-02-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structural insights into the effects of 2'-5' linkages on the RNA duplex.
Proc.Natl.Acad.Sci.USA, 111, 2014
4MS9
DownloadVisualize
BU of 4ms9 by Molmil
Native RNA-10mer Structure: ccggcgccgg
Descriptor: Native RNA duplex 10mer, STRONTIUM ION
Authors:Sheng, J, Li, L, Engelhart, A.E, Gan, J, Wang, J, Szostak, J.W.
Deposit date:2013-09-18
Release date:2014-02-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:Structural insights into the effects of 2'-5' linkages on the RNA duplex.
Proc.Natl.Acad.Sci.USA, 111, 2014
4MSB
DownloadVisualize
BU of 4msb by Molmil
RNA 10mer duplex with two 2'-5'-linkages
Descriptor: RNA 10mer duplex with two 2'-5'-linkages, STRONTIUM ION
Authors:Sheng, J, Li, L, Engelhart, A.E, Gan, J, Wang, J, Szostak, J.W.
Deposit date:2013-09-18
Release date:2014-02-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural insights into the effects of 2'-5' linkages on the RNA duplex.
Proc.Natl.Acad.Sci.USA, 111, 2014
7CC9
DownloadVisualize
BU of 7cc9 by Molmil
Sulfur binding domain of SprMcrA complexed with phosphorothioated DNA
Descriptor: ACETATE ION, DNA (5'-D(*GP*GP*CP*GP*GS*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*CP*CP*GP*CP*C)-3'), ...
Authors:Yu, H, Zhao, G, Gan, J, Liu, G, Wu, G, He, X.
Deposit date:2020-06-16
Release date:2020-07-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.063 Å)
Cite:DNA backbone interactions impact the sequence specificity of DNA sulfur-binding domains: revelations from structural analyses.
Nucleic Acids Res., 48, 2020
5C90
DownloadVisualize
BU of 5c90 by Molmil
Staphylococcus aureus ClpP mutant - Y63A
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ATP-dependent Clp protease proteolytic subunit
Authors:Ye, F, Liu, H, Zhang, J, Gan, J, Yang, C.-G.
Deposit date:2015-06-26
Release date:2016-05-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Characterization of Gain-of-Function Mutant Provides New Insights into ClpP Structure
Acs Chem.Biol., 11, 2016
3S49
DownloadVisualize
BU of 3s49 by Molmil
RNA crystal structure with 2-Se-uridine modification
Descriptor: POTASSIUM ION, RNA (5'-R(*GP*UP*AP*UP*AP*(RUS)P*AP*C)-3')
Authors:Sheng, J, Gan, J, Sun, H, Hassan, A.E.H, Jiang, S, Huang, Z.
Deposit date:2011-05-19
Release date:2011-06-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Higher Specificity of RNA Base Pairing with 2-Selenouridine
To be Published
3IFF
DownloadVisualize
BU of 3iff by Molmil
2'-SeMe-A modified DNA decamer
Descriptor: DNA (5'-D(*GP*TP*AP*CP*GP*CP*GP*TP*(XUA)P*C)-3'), MAGNESIUM ION
Authors:Sheng, J, Gan, J, Salon, J, Huang, Z.
Deposit date:2009-07-24
Release date:2009-08-11
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Selenium modification at 2'-position of adenosine for nucleic acid structure studies
To be Published
3IFI
DownloadVisualize
BU of 3ifi by Molmil
2'-SeMe-dG modified octamer DNA
Descriptor: DNA (5'-D(*GP*TP*(XUG)P*TP*AP*CP*AP*C)-3')
Authors:Sheng, J, Gan, J, Salon, J, Huang, Z.
Deposit date:2009-07-24
Release date:2009-08-11
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Synthesis and crystal structure of 2'-se-modified guanosine containing DNA.
J.Org.Chem., 75, 2010

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon