Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
8POE
DownloadVisualize
BU of 8poe by Molmil
Structure of tissue-specific lipid scramblase ATG9B homotrimer, refined with C3 symmetry applied
Descriptor: Autophagy-related protein 9B
Authors:Chiduza, G.N, Pye, V.E, Tooze, S.A, Cherepanov, P.
Deposit date:2023-07-04
Release date:2023-11-15
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:ATG9B is a tissue-specific homotrimeric lipid scramblase that can compensate for ATG9A.
Autophagy, 20, 2024
5HOQ
DownloadVisualize
BU of 5hoq by Molmil
Apo structure of CalS11, TDP-rhamnose 3'-o-methyltransferase, an enzyme in Calicheamicin biosynthesis
Descriptor: SULFATE ION, TDP-rhamnose 3'-O-methyltransferase (CalS11)
Authors:Han, L, Helmich, K.E, Singh, S, Thorson, J.S, Bingman, C.A, Phillips Jr, G.N, Enzyme Discovery for Natural Product Biosynthesis
Deposit date:2016-01-19
Release date:2016-03-30
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.793 Å)
Cite:Loop dynamics of thymidine diphosphate-rhamnose 3'-O-methyltransferase (CalS11), an enzyme in calicheamicin biosynthesis.
Struct Dyn., 3, 2016
5INJ
DownloadVisualize
BU of 5inj by Molmil
Crystal Structure of Prenyltransferase PriB Ternary Complex with L-Tryptophan and Dimethylallyl thiolodiphosphate (DMSPP)
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DIMETHYLALLYL S-THIOLODIPHOSPHATE, Prenyltransferase, ...
Authors:Cao, H, Elshahawi, S, Benach, J, Wasserman, S.R, Morisco, L.L, Koss, J.W, Thorson, J.S, Phillips Jr, G.N, Enzyme Discovery for Natural Product Biosynthesis (NatPro)
Deposit date:2016-03-07
Release date:2016-05-11
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structure and specificity of a permissive bacterial C-prenyltransferase.
Nat. Chem. Biol., 13, 2017
5K9M
DownloadVisualize
BU of 5k9m by Molmil
Crystal Structure of PriB Binary Complex with Product Diphosphate
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, PYROPHOSPHATE 2-, PriB Prenyltransferase
Authors:Cao, H, Elshahawi, S, Benach, J, Wasserman, S.R, Morisco, L.L, Koss, J.W, Thorson, J.S, Phillips Jr, G.N, Enzyme Discovery for Natural Product Biosynthesis (NatPro)
Deposit date:2016-06-01
Release date:2016-06-15
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure and specificity of a permissive bacterial C-prenyltransferase.
Nat. Chem. Biol., 13, 2017
5JXM
DownloadVisualize
BU of 5jxm by Molmil
Crystal Structure of Prenyltransferase PriB Apo Form
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, MAGNESIUM ION, PriB
Authors:Cao, H, Elshahawi, S, Benach, J, Wasserman, S.R, Morisco, L.L, Koss, J.W, Thorson, J.S, Phillips Jr, G.N, Enzyme Discovery for Natural Product Biosynthesis (NatPro)
Deposit date:2016-05-13
Release date:2016-06-08
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Structure and specificity of a permissive bacterial C-prenyltransferase.
Nat. Chem. Biol., 13, 2017
5MG0
DownloadVisualize
BU of 5mg0 by Molmil
Structure of PAS-GAF fragment of Deinococcus phytochrome by serial femtosecond crystallography
Descriptor: 1,2-ETHANEDIOL, 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, Bacteriophytochrome, ...
Authors:Burgie, E.S, Fuller, F.D, Gul, S, Miller, M.D, Young, I.D, Brewster, A.S, Clinger, J, Aller, P, Braeuer, P, Hutchison, C, Alonso-Mori, R, Kern, J, Yachandra, V.K, Yano, J, Sauter, N.K, Phillips Jr, G.N, Vierstra, R.D, Orville, A.M.
Deposit date:2016-11-20
Release date:2017-02-22
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Drop-on-demand sample delivery for studying biocatalysts in action at X-ray free-electron lasers.
Nat. Methods, 14, 2017
5MG1
DownloadVisualize
BU of 5mg1 by Molmil
Structure of the photosensory module of Deinococcus phytochrome by serial femtosecond X-ray crystallography
Descriptor: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, Bacteriophytochrome
Authors:Burgie, E.S, Fuller, F.D, Gul, S, Young, I.D, Brewster, A.S, Clinger, J, Andi, B, Stan, C, Allaire, M, Nelsen, S, Alonso-Mori, R, Phillips Jr, G.N, Sauter, N.K, Kern, J, Yachandra, V.K, Yano, J, Vierstra, R.D, Orville, A.M.
Deposit date:2016-11-20
Release date:2017-02-22
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Drop-on-demand sample delivery for studying biocatalysts in action at X-ray free-electron lasers.
Nat. Methods, 14, 2017
7JXR
DownloadVisualize
BU of 7jxr by Molmil
Crystal Structure Human Immunodeficiency Virus-1 Matrix protein Mutant Q63R Crystal Form 1
Descriptor: HEXAETHYLENE GLYCOL, Matrix protein, SULFATE ION
Authors:Green, T.J, Eastep, G.N, Ghanam, R.H, Saad, J.S.
Deposit date:2020-08-27
Release date:2021-04-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Structural characterization of HIV-1 matrix mutants implicated in envelope incorporation.
J.Biol.Chem., 296, 2021
7JXS
DownloadVisualize
BU of 7jxs by Molmil
Crystal Structure Human Immunodeficiency Virus-1 Matrix protein Mutant Q63R Crystal Form 2
Descriptor: ACETATE ION, DODECAETHYLENE GLYCOL, HEXAETHYLENE GLYCOL, ...
Authors:Green, T.J, Eastep, G.N, Ghanam, R.H, Saad, J.S.
Deposit date:2020-08-27
Release date:2021-04-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural characterization of HIV-1 matrix mutants implicated in envelope incorporation.
J.Biol.Chem., 296, 2021
5JR3
DownloadVisualize
BU of 5jr3 by Molmil
Crystal structure of carminomycin-4-O-methyltransferase DnrK in complex with SAH and 4-methylumbelliferone
Descriptor: 7-hydroxy-4-methyl-2H-chromen-2-one, Carminomycin 4-O-methyltransferase DnrK, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Wang, F, Johnson, B.R, Huber, T.D, Singh, S, Thorson, J.S, Phillips Jr, G.N, Enzyme Discovery for Natural Product Biosynthesis (NatPro)
Deposit date:2016-05-05
Release date:2016-06-01
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Crystal structure of carminomycin-4-O-methyltransferase DnrK in complex with SAH and 4-methylumbelliferone (to be published)
To Be Published
8A6M
DownloadVisualize
BU of 8a6m by Molmil
Phosphatidylserine-dependent synaptic vesicle membrane sculpting by synaptogyrin
Descriptor: Isoform 1B of Synaptogyrin-1
Authors:Yu, T.K, Eastep, G.N, Flores, D, Zweckstetter, M.
Deposit date:2022-06-18
Release date:2023-05-24
Last modified:2023-07-26
Method:SOLUTION NMR
Cite:Phosphatidylserine-dependent structure of synaptogyrin remodels the synaptic vesicle membrane.
Nat.Struct.Mol.Biol., 30, 2023
4W79
DownloadVisualize
BU of 4w79 by Molmil
Crystal Structure of Human Protein N-terminal Glutamine Amidohydrolase
Descriptor: 1,2-ETHANEDIOL, CARBONATE ION, Protein N-terminal glutamine amidohydrolase, ...
Authors:Bitto, E, Bingman, C.A, McCoy, J.G, Wesenberg, G.E, Phillips Jr, G.N, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2014-08-21
Release date:2014-09-17
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of human protein N-terminal glutamine amidohydrolase, an initial component of the N-end rule pathway.
Plos One, 9, 2014
7UX8
DownloadVisualize
BU of 7ux8 by Molmil
Crystal structure of MfnG, an L- and D-tyrosine O-methyltransferase from the marformycin biosynthesis pathway of Streptomyces drozdowiczii, with SAH and L-Tyrosine bound at 1.4 A resolution (P212121 - form II)
Descriptor: MfnG, S-ADENOSYL-L-HOMOCYSTEINE, TYROSINE, ...
Authors:Miller, M.D, Wu, K.-L, Xu, W, Xiao, H, Philips Jr, G.N.
Deposit date:2022-05-05
Release date:2022-09-28
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Expanding the eukaryotic genetic code with a biosynthesized 21st amino acid.
Protein Sci., 31, 2022
7UX7
DownloadVisualize
BU of 7ux7 by Molmil
Crystal structure of MfnG, an L- and D-tyrosine O-methyltransferase from the marformycin biosynthesis pathway of Streptomyces drozdowiczii, with SAH bound at 1.2 A resolution (P212121 - form II)
Descriptor: MfnG, S-ADENOSYL-L-HOMOCYSTEINE, UNKNOWN LIGAND
Authors:Miller, M.D, Wu, K.-L, Xu, W, Xiao, H, Philips Jr, G.N.
Deposit date:2022-05-05
Release date:2022-10-12
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.14 Å)
Cite:Expanding the eukaryotic genetic code with a biosynthesized 21st amino acid.
Protein Sci., 31, 2022
7UX6
DownloadVisualize
BU of 7ux6 by Molmil
Crystal structure of MfnG, an L- and D-tyrosine O-methyltransferase from the marformycin biosynthesis pathway of Streptomyces drozdowiczii, with SAH bound at 1.35 A resolution (P212121 - form I)
Descriptor: MfnG, S-ADENOSYL-L-HOMOCYSTEINE, UNKNOWN LIGAND
Authors:Miller, M.D, Wu, K.-L, Xu, W, Xiao, H, Philips Jr, G.N.
Deposit date:2022-05-05
Release date:2022-10-12
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Expanding the eukaryotic genetic code with a biosynthesized 21st amino acid.
Protein Sci., 31, 2022
8YA6
DownloadVisualize
BU of 8ya6 by Molmil
endo-1,3-fucanase Fun168A
Descriptor: endo-1,3-fucanase
Authors:Chen, G.N, Chang, Y.G.
Deposit date:2024-02-07
Release date:2024-02-28
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Strucutre of endo-1,3-fucanase Fun168A at 1.92 Angstroms resolution.
To Be Published
8TIB
DownloadVisualize
BU of 8tib by Molmil
Cryo-EM of tri-pilus from S. islandicus REY15A
Descriptor: DUF973 family protein
Authors:Eastep, G.N, Liu, J, Rich-New, S.T, Egelman, E.H, Krupovic, M, Wang, F.
Deposit date:2023-07-19
Release date:2024-01-10
Method:ELECTRON MICROSCOPY (3.47 Å)
Cite:Cryo-EM of tri-pilus from S. islandicus REY15A
To Be Published
8TIF
DownloadVisualize
BU of 8tif by Molmil
Cryo-EM of mono-pilus from S. islandicus REY15A
Descriptor: DUF973 family protein
Authors:Eastep, G.N, Liu, J, Rich-New, S.T, Egelman, E.H, Krupovic, M, Wang, F.
Deposit date:2023-07-19
Release date:2024-01-10
Method:ELECTRON MICROSCOPY (3.89 Å)
Cite:Cryo-EM of mono-pilus from S. islandicus REY15A
To Be Published
8YA7
DownloadVisualize
BU of 8ya7 by Molmil
endo-1,3-fucanase Fun168A,complex with fucotetraose
Descriptor: alpha-L-fucopyranose-(1-3)-2,4-di-O-sulfo-alpha-L-fucopyranose-(1-3)-2-O-sulfo-alpha-L-fucopyranose-(1-3)-2-O-sulfo-alpha-L-fucopyranose, endo-1,3-fucanase
Authors:Chen, G.N, Chang, Y.G.
Deposit date:2024-02-07
Release date:2024-02-28
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Strucutre of endo-1,3-fucanase Fun168A complex with fucotetrose at 1.99 Angstroms resolution.
To Be Published
6VJV
DownloadVisualize
BU of 6vjv by Molmil
Crystal structure of the Prochlorococcus phage (myovirus P-SSM2) ferredoxin at 1.6 Angstroms
Descriptor: ACETATE ION, FE2/S2 (INORGANIC) CLUSTER, Ferredoxin, ...
Authors:Olmos Jr, J.L, Campbell, I.J, Miller, M.D, Xu, W, Kahanda, D, Atkinson, J.T, Sparks, N, Bennett, G.N, Silberg, J.J, Phillips Jr, G.N.
Deposit date:2020-01-17
Release date:2020-02-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Prochlorococcusphage ferredoxin: structural characterization and electron transfer to cyanobacterial sulfite reductases.
J.Biol.Chem., 295, 2020
6XOD
DownloadVisualize
BU of 6xod by Molmil
Crystal structure of the PEX4-PEX22 protein complex from Arabidopsis thaliana
Descriptor: Peroxisome biogenesis protein 22, Protein PEROXIN-4
Authors:Olmos Jr, J.L, Bradford, S.E, Miller, M.D, Xu, W, Wright, Z.J, Bartel, B, Phillips Jr, G.N.
Deposit date:2020-07-06
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:The Structure of the Arabidopsis PEX4-PEX22 Peroxin Complex-Insights Into Ubiquitination at the Peroxisomal Membrane
Front Cell Dev Biol, 10, 2022
7MSY
DownloadVisualize
BU of 7msy by Molmil
Structure of CalU17 from the Calicheamicin Biosynthesis Pathway of Micromonospora echinospora
Descriptor: CALCIUM ION, CHLORIDE ION, CalU17, ...
Authors:Kosgei, A.J, Miller, M.D, Xu, W, Van Lanen, S.G, Thorson, J.S, Phillips Jr, G.N.
Deposit date:2021-05-12
Release date:2021-07-28
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:The crystal structure of DynF from the dynemicin-biosynthesis pathway of Micromonospora chersina.
Acta Crystallogr.,Sect.F, 78, 2022
7ML6
DownloadVisualize
BU of 7ml6 by Molmil
Structure of CalU17 from the Calicheamicin Biosynthesis Pathway of Micromonospora echinospora
Descriptor: CalU17, GLYCEROL
Authors:Kosgei, A.J, Miller, M.D, Xu, W, Van Lanen, S.G, Thorson, J.S, Phillips Jr, G.N.
Deposit date:2021-04-27
Release date:2021-07-28
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The crystal structure of DynF from the dynemicin-biosynthesis pathway of Micromonospora chersina.
Acta Crystallogr.,Sect.F, 78, 2022
4WO2
DownloadVisualize
BU of 4wo2 by Molmil
CRYSTAL STRUCTURE OF HUMAN NATIVE CKIT PROTO-ONCOGENE PROMOTER QUADRUPLEX DNA
Descriptor: DNA (5'-D(*AP*GP*GP*GP*AP*GP*GP*GP*CP*GP*CP*TP*GP*GP*GP*AP*GP*GP*AP*GP*GP*G)-3'), POTASSIUM ION
Authors:wei, D, parkinson, g.n, neidle, s.
Deposit date:2014-10-15
Release date:2014-10-22
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:CRYSTAL STRUCTURE OF HUMAN NATIVE CKIT-1 PROTO-ONCOGENE PROMOTER QUADRUPLEX DNA
TO BE PUBLISHED
7N7V
DownloadVisualize
BU of 7n7v by Molmil
Crystal structure of TtnM, a Fe(II)-alpha-ketoglutarate-dependent hydroxylase from the tautomycetin biosynthesis pathway in Streptomyces griseochromogenes at 2 A.
Descriptor: CHLORIDE ION, FE (II) ION, Predicted hydroxylase
Authors:Han, L, Xu, W, Ma, M, Miller, M.D, Shen, B, Phillips Jr, G.N, Enzyme Discovery for Natural Product Biosynthesis (NatPro)
Deposit date:2021-06-11
Release date:2022-07-06
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Structure of TtnM, a Fe(II)-alpha-ketoglutarate-dependent hydroxylase from the tautomycetin biosynthesis pathway in Streptomyces griseochromogenes.
To Be Published

218196

PDB entries from 2024-04-10

PDB statisticsPDBj update infoContact PDBjnumon