Author results

1I2H
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CRYSTAL STRUCTURE ANALYSIS OF PSD-ZIP45(HOMER1C/VESL-1L)CONSERVED HOMER 1 DOMAIN
Descriptor:PSD-ZIP45(HOMER-1C/VESL-1L)
Authors:Irie, K., Nakatsu, T., Mitsuoka, K., Fujiyoshi, Y., Kato, H.
Deposit date:2001-02-09
Release date:2002-05-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of the Homer 1 Family Conserved Region Reveals the Interaction Between the EVH1 Domain and Own Proline-rich Motif
J.Mol.Biol., 318, 2002
2B6O
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ELECTRON CRYSTALLOGRAPHIC STRUCTURE OF LENS AQUAPORIN-0 (AQP0) (LENS MIP) AT 1.9A RESOLUTION, IN A CLOSED PORE STATE
Descriptor:Lens fiber major intrinsic protein, 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE
Authors:Gonen, T., Cheng, Y., Sliz, P., Hiroaki, Y., Fujiyoshi, Y., Harrison, S.C., Walz, T.
Deposit date:2005-10-03
Release date:2005-12-06
Last modified:2018-07-18
Method:ELECTRON CRYSTALLOGRAPHY (1.9 Å)
Cite:Lipid-protein interactions in double-layered two-dimensional AQP0 crystals.
Nature, 438, 2005
5X93
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HUMAN ENDOTHELIN RECEPTOR TYPE-B IN COMPLEX WITH ANTAGONIST K-8794
Descriptor:Endothelin B receptor,Endolysin,Endothelin B receptor, 3-[6-[(4-tert-butylphenyl)sulfonylamino]-5-(2-methoxyphenoxy)-2-pyrimidin-2-yl-pyrimidin-4-yl]oxy-N-(2,6-dimethylphenyl)propanamide, (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, ...
Authors:Shihoya, W., Nishizawa, T., Yamashita, K., Hirata, K., Okuta, A., Tani, K., Fujiyoshi, Y., Doi, T., Nureki, O.
Deposit date:2017-03-05
Release date:2017-08-16
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:X-ray structures of endothelin ETB receptor bound to clinical antagonist bosentan and its analog
Nat. Struct. Mol. Biol., 24, 2017
2B6P
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X-RAY STRUCTURE OF LENS AQUAPORIN-0 (AQP0) (LENS MIP) IN AN OPEN PORE STATE
Descriptor:Lens fiber major intrinsic protein
Authors:Gonen, T., Cheng, Y., Sliz, P., Hiroaki, Y., Fujiyoshi, Y., Harrison, S.C., Walz, T.
Deposit date:2005-10-03
Release date:2005-12-06
Last modified:2011-10-26
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Lipid-protein interactions in double-layered two-dimensional AQP0 crystals.
Nature, 438, 2005
4P79
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CRYSTAL STRUCTURE OF MOUSE CLAUDIN-15
Descriptor:Claudin-15, (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
Authors:Suzuki, H., Nishizawa, T., Tani, K., Yamazaki, Y., Tamura, A., Ishitani, R., Dohmae, N., Tsukita, S., Nureki, O., Fujiyoshi, Y.
Deposit date:2014-03-26
Release date:2014-04-30
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of a claudin provides insight into the architecture of tight junctions.
Science, 344, 2014
2BHW
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PEA LIGHT-HARVESTING COMPLEX II AT 2.5 ANGSTROM RESOLUTION
Descriptor:CHLOROPHYLL A-B BINDING PROTEIN AB80, (3R,3'R,6'S,9R,9'R,13R,13'S)-4',5'-DIDEHYDRO-5',6',7',8',9,9',10,10',11,11',12,12',13,13',14,14',15,15'-OCTADECAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL, ...
Authors:Standfuss, J., Terwisscha van Scheltinga, A.C., Lamborghini, M., Kuehlbrandt, W.
Deposit date:2005-01-19
Release date:2006-05-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mechanisms of Photoprotection and Nonphotochemical Quenching in Pea Light-Harvesting Complex at 2.5 A Resolution.
Embo J., 24, 2005
5GLI
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HUMAN ENDOTHELIN RECEPTOR TYPE-B IN THE LIGAND-FREE FORM
Descriptor:Endothelin Receptor Subtype-B, SULFATE ION, (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, ...
Authors:Shihoya, W., Nishizawa, T., Okuta, A., Tani, K., Fujiyoshi, Y., Dohmae, N., Nureki, O., Doi, T.
Deposit date:2016-07-11
Release date:2016-09-07
Last modified:2016-09-28
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Activation mechanism of endothelin ETB receptor by endothelin-1.
Nature, 537, 2016
1L9H
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CRYSTAL STRUCTURE OF BOVINE RHODOPSIN AT 2.6 ANGSTROMS RESOLUTION
Descriptor:rhodopsin, ALPHA-D-MANNOSE, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Okada, T., Fujiyoshi, Y., Silow, M., Navarro, J., Landau, E.M., Shichida, Y.
Deposit date:2002-03-23
Release date:2002-05-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Functional role of internal water molecules in rhodopsin revealed by X-ray crystallography.
Proc.Natl.Acad.Sci.USA, 99, 2002
5YLV
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CRYSTAL STRUCTURE OF THE GASTRIC PROTON PUMP COMPLEXED WITH SCH28080
Descriptor:Potassium-transporting ATPase alpha chain 1, Potassium-transporting ATPase subunit beta, 2-(2-methyl-8-phenylmethoxy-imidazo[1,2-a]pyridin-3-yl)ethanenitrile, ...
Authors:Abe, K., Irie, K., Nakanishi, H., Fujiyoshi, Y.
Deposit date:2017-10-19
Release date:2018-04-11
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (2.799778 Å)
Cite:Crystal structures of the gastric proton pump
Nature, 556, 2018
5YLU
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CRYSTAL STRUCTURE OF THE GASTRIC PROTON PUMP COMPLEXED WITH VONOPRAZAN
Descriptor:Potassium-transporting ATPase alpha chain 1, Potassium-transporting ATPase subunit beta, 1-[5-(2-fluorophenyl)-1-pyridin-3-ylsulfonyl-pyrrol-3-yl]-~{N}-methyl-methanamine, ...
Authors:Abe, K., Irie, K., Nakanishi, H., Fujiyoshi, Y.
Deposit date:2017-10-19
Release date:2018-04-11
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (2.79989 Å)
Cite:Crystal structures of the gastric proton pump
Nature, 556, 2018
2ZZ9
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STRUCTURE OF AQUAPORIN-4 S180D MUTANT AT 2.8 A RESOLUTION BY ELECTRON CRYSTALLOGRAPHY
Descriptor:Aquaporin-4, 1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine
Authors:Tani, K., Mitsuma, T., Hiroaki, Y., Kamegawa, A., Nishikawa, K., Tanimura, Y., Fujiyoshi, Y.
Deposit date:2009-02-06
Release date:2009-06-09
Last modified:2014-10-29
Method:ELECTRON CRYSTALLOGRAPHY (2.8 Å)
Cite:Mechanism of Aquaporin-4's Fast and Highly Selective Water Conduction and Proton Exclusion.
J.Mol.Biol., 389, 2009
5GLH
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HUMAN ENDOTHELIN RECEPTOR TYPE-B IN COMPLEX WITH ET-1
Descriptor:Endothelin Receptor Subtype-B, Peptide from Endothelin-1
Authors:Shihoya, W., Nishizawa, T., Okuta, A., Tani, K., Fujiyoshi, Y., Dohmae, N., Nureki, O., Doi, T.
Deposit date:2016-07-11
Release date:2016-09-07
Last modified:2016-09-28
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Activation mechanism of endothelin ETB receptor by endothelin-1.
Nature, 537, 2016
5YUA
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CRYSTAL STRUCTURE OF VOLTAGE-GATED SODIUM CHANNEL NAVAB IN HIGH-PH CONDITION
Descriptor:Ion transport protein, CALCIUM ION, DODECYL-BETA-D-MALTOSIDE, ...
Authors:Irie, K., Shimomura, T., Fujiyoshi, Y.
Deposit date:2017-11-21
Release date:2017-12-27
Last modified:2018-01-17
Method:X-RAY DIFFRACTION (2.800856 Å)
Cite:Structural insight on the voltage dependence of prokaryotic voltage gated sodium channel NavAb.
FEBS Lett., 2017
1AT9
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STRUCTURE OF BACTERIORHODOPSIN AT 3.0 ANGSTROM DETERMINED BY ELECTRON CRYSTALLOGRAPHY
Descriptor:BACTERIORHODOPSIN, RETINAL
Authors:Kimura, Y., Vassylyev, D.G., Miyazawa, A., Kidera, A., Matsushima, M., Mitsuoka, K., Murata, K., Hirai, T., Fujiyoshi, Y.
Deposit date:1997-08-20
Release date:1998-09-16
Last modified:2011-07-13
Method:ELECTRON CRYSTALLOGRAPHY (3 Å)
Cite:Surface of bacteriorhodopsin revealed by high-resolution electron crystallography.
Nature, 389, 1997
2AT9
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STRUCTURE OF BACTERIORHODOPSIN AT 3.0 ANGSTROM BY ELECTRON CRYSTALLOGRAPHY
Descriptor:BACTERIORHODOPSIN, RETINAL, 3-[[3-METHYLPHOSPHONO-GLYCEROLYL]PHOSPHONYL]-[1,2-DI[2,6,10,14-TETRAMETHYL-HEXADECAN-16-YL]GLYCEROL
Authors:Mitsuoka, K., Hirai, T., Murata, K., Miyazawa, A., Kidera, A., Kimura, Y., Fujiyoshi, Y.
Deposit date:1998-12-17
Release date:1999-04-27
Last modified:2011-07-13
Method:ELECTRON CRYSTALLOGRAPHY (3 Å)
Cite:The structure of bacteriorhodopsin at 3.0 A resolution based on electron crystallography: implication of the charge distribution.
J.Mol.Biol., 286, 1999
6ACF
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STRUCTURE OF LEUCINE DEHYDROGENASE FROM GEOBACILLUS STEAROTHERMOPHILUS BY CRYO-EM
Descriptor:Leucine dehydrogenase
Authors:Yamaguchi, H., Kamegawa, A., Nakata, K., Kashiwagi, T., Mizukoshi, T., Fujiyoshi, Y., Tani, K.
Deposit date:2018-07-26
Release date:2018-12-26
Last modified:2019-02-06
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural insights into thermostabilization of leucine dehydrogenase from its atomic structure by cryo-electron microscopy
J. Struct. Biol., 205, 2019
2D57
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DOUBLE LAYERED 2D CRYSTAL STRUCTURE OF AQUAPORIN-4 (AQP4M23) AT 3.2 A RESOLUTION BY ELECTRON CRYSTALLOGRAPHY
Descriptor:Aquaporin-4
Authors:Hiroaki, Y., Tani, K., Kamegawa, A., Gyobu, N., Nishikawa, K., Suzuki, H., Walz, T., Sasaki, S., Mitsuoka, K., Kimura, K., Mizoguchi, A., Fujiyoshi, Y.
Deposit date:2005-10-29
Release date:2006-01-31
Last modified:2018-07-18
Method:ELECTRON CRYSTALLOGRAPHY (3.2 Å)
Cite:Implications of the Aquaporin-4 Structure on Array Formation and Cell Adhesion
J.Mol.Biol., 355, 2005
2H8A
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STRUCTURE OF MICROSOMAL GLUTATHIONE TRANSFERASE 1 IN COMPLEX WITH GLUTATHIONE
Descriptor:Microsomal glutathione S-transferase 1, GLUTATHIONE
Authors:Hebert, H.
Deposit date:2006-06-07
Release date:2007-05-22
Last modified:2012-03-21
Method:ELECTRON CRYSTALLOGRAPHY (3.2 Å)
Cite:Structural basis for detoxification and oxidative stress protection in membranes.
J.Mol.Biol., 360, 2006
3VOU
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THE CRYSTAL STRUCTURE OF NAK-NAVSULP CHIMERA CHANNEL
Descriptor:Ion transport 2 domain protein, Voltage-gated sodium channel, SODIUM ION, ...
Authors:Irie, K., Shimomura, T., Fujiyoshi, Y.
Deposit date:2012-02-10
Release date:2012-05-02
Last modified:2017-08-16
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:The C-terminal helical bundle of the tetrameric prokaryotic sodium channel accelerates the inactivation rate
Nat Commun, 3, 2012
6ACH
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STRUCTURE OF NAD+-BOUND LEUCINE DEHYDROGENASE FROM GEOBACILLUS STEAROTHERMOPHILUS BY CRYO-EM
Descriptor:Leucine dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Yamaguchi, H., Kamegawa, A., Nakata, K., Kashiwagi, T., Mizukoshi, T., Fujiyoshi, Y., Tani, K.
Deposit date:2018-07-26
Release date:2018-12-26
Last modified:2019-02-06
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural insights into thermostabilization of leucine dehydrogenase from its atomic structure by cryo-electron microscopy
J. Struct. Biol., 205, 2019
5H1Q
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C. ELEGANS INX-6 GAP JUNCTION HEMICHANNEL
Descriptor:Innexin-6
Authors:Oshima, A., Tani, K., Fujiyoshi, Y.
Deposit date:2016-10-11
Release date:2016-12-07
Last modified:2017-02-15
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Atomic structure of the innexin-6 gap junction channel determined by cryo-EM
Nat Commun, 7, 2016
5YUB
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CRYSTAL STRUCTURE OF VOLTAGE-GATED SODIUM CHANNEL NAVAB E32Q MUTANT
Descriptor:Ion transport protein, CALCIUM ION, DODECYL-BETA-D-MALTOSIDE, ...
Authors:Irie, K., Shimomura, T., Fujiyoshi, Y.
Deposit date:2017-11-21
Release date:2017-12-27
Last modified:2018-01-17
Method:X-RAY DIFFRACTION (3.40004 Å)
Cite:Structural insight on the voltage dependence of prokaryotic voltage gated sodium channel NavAb.
FEBS Lett., 2017
5YUC
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CRYSTAL STRUCTURE OF VOLTAGE-GATED SODIUM CHANNEL NAVAB N49K MUTANT
Descriptor:Ion transport protein, CALCIUM ION, DODECYL-BETA-D-MALTOSIDE, ...
Authors:Irie, K., Shimomura, T., Fujiyoshi, Y.
Deposit date:2017-11-21
Release date:2017-12-27
Last modified:2018-01-17
Method:X-RAY DIFFRACTION (3.400992 Å)
Cite:Structural insight on the voltage dependence of prokaryotic voltage gated sodium channel NavAb.
FEBS Lett., 2017
2ZW3
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STRUCTURE OF THE CONNEXIN-26 GAP JUNCTION CHANNEL AT 3.5 ANGSTROM RESOLUTION
Descriptor:Gap junction beta-2 protein
Authors:Maeda, S., Nakagawa, S., Suga, M., Yamashita, E., Oshima, A., Fujiyoshi, Y., Tsukihara, T.
Deposit date:2008-12-01
Release date:2009-04-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structure of the connexin 26 gap junction channel at 3.5 A resolution
Nature, 458, 2009
1H6I
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A REFINED STRUCTURE OF HUMAN AQUAPORIN 1
Descriptor:AQUAPORIN-1
Authors:De Groot, B.L., Engel, A., Grubmuller, H.
Deposit date:2001-06-15
Release date:2001-12-13
Last modified:2011-07-13
Method:ELECTRON CRYSTALLOGRAPHY (3.54 Å)
Cite:A Refined Structure of Human Aquaporin 1
FEBS Lett., 504, 2001
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